Wall clock time and date at job start Mon Mar 30 2020 04:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.48536 * 111.00507 * 2 1 4 4 C 1.54930 * 103.22934 * 200.28225 * 3 2 1 5 5 H 1.09000 * 110.72666 * 279.05137 * 4 3 2 6 6 C 1.50703 * 110.72457 * 155.76954 * 4 3 2 7 7 H 1.07996 * 120.00141 * 246.49936 * 6 4 3 8 8 C 1.37885 * 119.99623 * 66.49565 * 6 4 3 9 9 N 1.31509 * 119.99985 * 0.02562 * 8 6 4 10 10 Si 1.86805 * 119.99708 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46811 * 90.00437 * 10 8 6 12 12 H 1.48504 * 109.46738 * 210.00131 * 10 8 6 13 13 H 1.48501 * 109.47112 * 330.00299 * 10 8 6 14 14 C 1.54594 * 102.92371 * 37.41463 * 4 3 2 15 15 H 1.09001 * 110.31302 * 96.95870 * 14 4 3 16 16 N 1.46898 * 110.31022 * 219.12654 * 14 4 3 17 17 C 1.47904 * 111.00045 * 242.60605 * 2 1 3 18 18 H 1.09000 * 109.91571 * 265.19868 * 17 2 1 19 19 C 1.53002 * 109.91374 * 26.48905 * 17 2 1 20 20 C 1.53002 * 109.46917 * 184.74811 * 19 17 2 21 21 C 1.53002 * 109.46917 * 179.97438 * 20 19 17 22 22 C 1.53004 * 109.47101 * 60.00442 * 21 20 19 23 23 C 1.53002 * 109.46874 * 299.99584 * 22 21 20 24 24 C 1.52998 * 109.47063 * 59.99975 * 23 22 21 25 25 H 1.08998 * 109.47975 * 171.06883 * 1 2 3 26 26 H 1.09003 * 109.47432 * 291.06900 * 1 2 3 27 27 H 1.08998 * 109.47394 * 51.06219 * 1 2 3 28 28 H 1.09006 * 110.66122 * 318.71686 * 3 2 1 29 29 H 1.08997 * 110.66216 * 81.84406 * 3 2 1 30 30 H 0.97004 * 120.00028 * 179.97438 * 9 8 6 31 31 H 1.00900 * 110.99919 * 295.71591 * 16 14 4 32 32 H 1.00900 * 110.99911 * 59.66710 * 16 14 4 33 33 H 1.09001 * 109.47510 * 304.74474 * 19 17 2 34 34 H 1.09003 * 109.47273 * 300.00052 * 20 19 17 35 35 H 1.09000 * 109.47242 * 60.00069 * 20 19 17 36 36 H 1.08991 * 109.47467 * 299.99705 * 21 20 19 37 37 H 1.09008 * 109.46896 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47190 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47375 * 59.99773 * 22 21 20 40 40 H 1.09003 * 109.47273 * 300.00251 * 23 22 21 41 41 H 1.09000 * 109.47242 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47193 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.46850 * 60.00017 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 1 4.1115 0.8835 0.2786 6 6 3.9511 2.4888 -1.1434 7 1 4.1513 2.5320 -2.2038 8 6 4.1549 3.6032 -0.3573 9 7 3.9116 3.5503 0.9340 10 14 4.7780 5.1874 -1.1264 11 1 3.6235 6.0129 -1.5632 12 1 5.5763 5.9421 -0.1273 13 1 5.6293 4.8665 -2.3001 14 6 3.2981 0.1053 -1.5931 15 1 3.2135 0.5485 -2.5854 16 7 4.4419 -0.8149 -1.5406 17 6 1.9989 -0.6353 -1.2260 18 1 2.2121 -1.6874 -1.0366 19 6 0.9837 -0.5018 -2.3628 20 6 1.4891 -1.2632 -3.5899 21 6 0.4736 -1.1302 -4.7266 22 6 0.2954 0.3475 -5.0810 23 6 -0.2100 1.1089 -3.8539 24 6 0.8055 0.9759 -2.7172 25 1 -0.3635 -1.0151 -0.1595 26 1 -0.3634 0.3694 0.9590 27 1 -0.3634 0.6458 -0.7993 28 1 1.4237 2.0205 -0.6729 29 1 2.0041 1.7976 1.0095 30 1 4.0554 4.3342 1.4871 31 1 5.2994 -0.3400 -1.7796 32 1 4.5119 -1.2534 -0.6346 33 1 0.0269 -0.9171 -2.0463 34 1 2.4459 -0.8479 -3.9066 35 1 1.6157 -2.3160 -3.3376 36 1 -0.4829 -1.5458 -4.4097 37 1 0.8339 -1.6723 -5.6010 38 1 -0.4284 0.4423 -5.8904 39 1 1.2520 0.7631 -5.3979 40 1 -1.1666 0.6934 -3.5370 41 1 -0.3374 2.1616 -4.1065 42 1 0.4456 1.5187 -1.8432 43 1 1.7620 1.3914 -3.0342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259788198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:46 Heat of formation + Delta-G solvation = -8.559740 kcal Electronic energy + Delta-G solvation = -20691.570110 eV Core-core repulsion = 17963.584627 eV Total energy + Delta-G solvation = -2727.985482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05056 -36.74878 -33.69037 -32.65332 -30.88238 -30.26495 -29.02456 -26.56665 -25.19957 -23.16368 -22.23287 -21.84244 -20.23807 -19.50465 -18.11380 -16.64863 -15.50460 -14.98458 -14.71181 -14.43523 -14.37406 -13.89038 -13.76702 -13.53878 -13.04070 -12.51019 -12.20760 -11.98879 -11.79759 -11.49805 -11.38631 -11.10202 -11.03135 -10.88042 -10.73705 -10.65273 -10.55343 -10.45013 -10.13908 -9.97884 -9.80827 -9.57027 -9.47573 -8.94140 -8.47691 -7.66462 -7.38748 -6.07813 -4.12153 3.25483 3.33204 3.35682 4.37340 4.88699 4.97280 5.02485 5.07776 5.23828 5.35390 5.53174 5.55724 5.68751 5.78599 5.80134 5.84017 5.84085 5.89286 6.01314 6.06033 6.15712 6.24653 6.28501 6.36289 6.39192 6.43052 6.52720 6.56228 6.59260 6.67929 6.82750 6.93459 7.05452 7.07691 7.49960 7.58910 7.78970 7.87956 8.01915 8.06523 8.20934 8.42836 8.91673 9.52909 11.01104 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.008042 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.221493 B = 3480.945704 C = 3812.548292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.526 5.526 3 C 0.048 3.952 4 C 0.027 3.973 5 H 0.035 0.965 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.065 3.935 9 N -0.885 5.885 10 Si 0.887 3.113 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.084 3.916 15 H 0.082 0.918 16 N -0.844 5.844 17 C 0.075 3.925 18 H 0.076 0.924 19 C -0.102 4.102 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.261 0.739 31 H 0.338 0.662 32 H 0.331 0.669 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -6.891 -7.177 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.249 5.249 3 C -0.079 4.079 4 C 0.006 3.994 5 H 0.053 0.947 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.715 3.285 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.028 4.028 15 H 0.099 0.901 16 N -0.371 5.371 17 C -0.034 4.034 18 H 0.094 0.906 19 C -0.122 4.122 20 C -0.145 4.145 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.167 4.167 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.990 -7.471 -7.109 12.458 hybrid contribution 0.280 2.113 -0.203 2.141 sum -6.710 -5.358 -7.311 11.278 Atomic orbital electron populations 1.22616 0.90464 1.00327 1.00608 1.65029 1.06323 1.18608 1.34987 1.23495 0.97403 0.85740 1.01294 1.20247 0.92439 0.93367 0.93325 0.94674 1.21078 1.44533 0.95514 0.94222 0.92686 1.24993 0.95177 0.98749 0.94783 1.69959 1.48333 1.29664 1.04359 0.86669 0.78948 0.83757 0.79105 1.20718 1.21249 1.19898 1.22606 0.88558 0.91436 1.00197 0.90062 1.59136 1.07007 1.35705 1.35260 1.22470 0.94109 0.98785 0.88012 0.90627 1.21701 0.98994 0.95905 0.95581 1.21499 0.98813 0.99782 0.94448 1.21526 0.99351 0.96212 0.98341 1.21525 1.00956 0.95710 0.97369 1.21533 0.98675 0.99540 0.95760 1.22076 1.00152 0.96211 0.98242 0.92802 0.92611 0.94517 0.94262 0.90612 0.92963 0.85065 0.85762 0.91633 0.91307 0.92487 0.92685 0.92651 0.92888 0.92033 0.92829 0.92495 0.90691 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.23 60.06 0.49 0.64 16 2 N -0.53 -10.36 5.54 -230.79 -1.28 -11.63 16 3 C 0.05 1.09 4.94 -1.90 -0.01 1.09 16 4 C 0.03 0.64 2.60 -89.91 -0.23 0.40 16 5 H 0.04 0.94 8.02 -51.93 -0.42 0.53 16 6 C -0.51 -13.44 8.48 -34.44 -0.29 -13.73 16 7 H 0.05 1.43 7.55 -52.49 -0.40 1.04 16 8 C 0.07 1.76 5.36 -17.82 -0.10 1.66 16 9 N -0.89 -24.88 12.43 55.43 0.69 -24.19 16 10 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.08 1.66 2.33 -66.36 -0.15 1.50 16 15 H 0.08 1.70 4.53 -51.93 -0.24 1.46 16 16 N -0.84 -15.25 9.16 -3.52 -0.03 -15.28 16 17 C 0.08 1.37 2.88 -66.64 -0.19 1.17 16 18 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 19 C -0.10 -1.60 1.41 -90.62 -0.13 -1.73 16 20 C -0.11 -1.54 5.03 -26.73 -0.13 -1.68 16 21 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 22 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 23 C -0.12 -1.63 5.92 -26.73 -0.16 -1.79 16 24 C -0.13 -2.15 3.48 -26.73 -0.09 -2.25 16 25 H 0.05 0.81 7.37 -51.93 -0.38 0.43 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.04 0.60 4.62 -51.93 -0.24 0.36 16 28 H 0.04 0.92 5.19 -51.93 -0.27 0.65 16 29 H 0.08 1.96 7.66 -51.93 -0.40 1.56 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.34 6.07 9.08 -39.29 -0.36 5.71 16 32 H 0.33 5.87 8.94 -39.29 -0.35 5.52 16 33 H 0.07 1.00 6.10 -51.93 -0.32 0.68 16 34 H 0.07 1.09 6.93 -51.93 -0.36 0.73 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.37 3.48 -51.93 -0.18 1.19 16 43 H 0.08 1.46 6.08 -51.93 -0.32 1.14 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -26.47 307.38 -9.47 -35.93 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -7.15 Total: 12.67 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.31 Total: -17.96 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.62 Total: -51.10 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.47 -9.47 -35.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259788198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.374 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds