Wall clock time and date at job start Mon Mar 30 2020 04:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46889 * 1 3 3 C 1.48536 * 111.00507 * 2 1 4 4 C 1.54930 * 103.22934 * 200.28225 * 3 2 1 5 5 H 1.09000 * 110.72666 * 279.05137 * 4 3 2 6 6 C 1.50703 * 110.72457 * 155.76954 * 4 3 2 7 7 H 1.07996 * 120.00141 * 246.49936 * 6 4 3 8 8 C 1.37885 * 119.99623 * 66.49565 * 6 4 3 9 9 N 1.31509 * 119.99985 * 0.02562 * 8 6 4 10 10 Si 1.86805 * 119.99708 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46811 * 90.00437 * 10 8 6 12 12 H 1.48504 * 109.46738 * 210.00131 * 10 8 6 13 13 H 1.48501 * 109.47112 * 330.00299 * 10 8 6 14 14 C 1.54594 * 102.92371 * 37.41463 * 4 3 2 15 15 H 1.09001 * 110.31302 * 96.95870 * 14 4 3 16 16 N 1.46898 * 110.31022 * 219.12654 * 14 4 3 17 17 C 1.47904 * 111.00045 * 242.60605 * 2 1 3 18 18 H 1.09000 * 109.91571 * 265.19868 * 17 2 1 19 19 C 1.53002 * 109.91374 * 26.48905 * 17 2 1 20 20 C 1.53002 * 109.46917 * 184.74811 * 19 17 2 21 21 C 1.53002 * 109.46917 * 179.97438 * 20 19 17 22 22 C 1.53004 * 109.47101 * 60.00442 * 21 20 19 23 23 C 1.53002 * 109.46874 * 299.99584 * 22 21 20 24 24 C 1.52998 * 109.47063 * 59.99975 * 23 22 21 25 25 H 1.08998 * 109.47975 * 171.06883 * 1 2 3 26 26 H 1.09003 * 109.47432 * 291.06900 * 1 2 3 27 27 H 1.08998 * 109.47394 * 51.06219 * 1 2 3 28 28 H 1.09006 * 110.66122 * 318.71686 * 3 2 1 29 29 H 1.08997 * 110.66216 * 81.84406 * 3 2 1 30 30 H 0.97004 * 120.00028 * 179.97438 * 9 8 6 31 31 H 1.00900 * 110.99919 * 295.71591 * 16 14 4 32 32 H 1.00900 * 110.99911 * 59.66710 * 16 14 4 33 33 H 1.09001 * 109.47510 * 304.74474 * 19 17 2 34 34 H 1.09003 * 109.47273 * 300.00052 * 20 19 17 35 35 H 1.09000 * 109.47242 * 60.00069 * 20 19 17 36 36 H 1.08991 * 109.47467 * 299.99705 * 21 20 19 37 37 H 1.09008 * 109.46896 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47190 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47375 * 59.99773 * 22 21 20 40 40 H 1.09003 * 109.47273 * 300.00251 * 23 22 21 41 41 H 1.09000 * 109.47242 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.47193 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.46850 * 60.00017 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 1 4.1115 0.8835 0.2786 6 6 3.9511 2.4888 -1.1434 7 1 4.1513 2.5320 -2.2038 8 6 4.1549 3.6032 -0.3573 9 7 3.9116 3.5503 0.9340 10 14 4.7780 5.1874 -1.1264 11 1 3.6235 6.0129 -1.5632 12 1 5.5763 5.9421 -0.1273 13 1 5.6293 4.8665 -2.3001 14 6 3.2981 0.1053 -1.5931 15 1 3.2135 0.5485 -2.5854 16 7 4.4419 -0.8149 -1.5406 17 6 1.9989 -0.6353 -1.2260 18 1 2.2121 -1.6874 -1.0366 19 6 0.9837 -0.5018 -2.3628 20 6 1.4891 -1.2632 -3.5899 21 6 0.4736 -1.1302 -4.7266 22 6 0.2954 0.3475 -5.0810 23 6 -0.2100 1.1089 -3.8539 24 6 0.8055 0.9759 -2.7172 25 1 -0.3635 -1.0151 -0.1595 26 1 -0.3634 0.3694 0.9590 27 1 -0.3634 0.6458 -0.7993 28 1 1.4237 2.0205 -0.6729 29 1 2.0041 1.7976 1.0095 30 1 4.0554 4.3342 1.4871 31 1 5.2994 -0.3400 -1.7796 32 1 4.5119 -1.2534 -0.6346 33 1 0.0269 -0.9171 -2.0463 34 1 2.4459 -0.8479 -3.9066 35 1 1.6157 -2.3160 -3.3376 36 1 -0.4829 -1.5458 -4.4097 37 1 0.8339 -1.6723 -5.6010 38 1 -0.4284 0.4423 -5.8904 39 1 1.2520 0.7631 -5.3979 40 1 -1.1666 0.6934 -3.5370 41 1 -0.3374 2.1616 -4.1065 42 1 0.4456 1.5187 -1.8432 43 1 1.7620 1.3914 -3.0342 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259788198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:45 Heat of formation + Delta-G solvation = -26.473518 kcal Electronic energy + Delta-G solvation = -20692.346909 eV Core-core repulsion = 17963.584627 eV Total energy + Delta-G solvation = -2728.762282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.51963 -38.07426 -35.39399 -34.49067 -32.25391 -31.45107 -30.71505 -28.10676 -26.96167 -24.86632 -23.40704 -23.18070 -21.78376 -21.00299 -19.51781 -18.58008 -17.01441 -16.79410 -16.19896 -16.08191 -15.73944 -15.16620 -15.06319 -14.92831 -14.40283 -14.09321 -13.99624 -13.26042 -13.15611 -13.05652 -12.91366 -12.84204 -12.68692 -12.38980 -12.27972 -12.04826 -12.00228 -11.86002 -11.73010 -11.47144 -11.14669 -11.09950 -10.86568 -10.70443 -10.54673 -9.31194 -8.96257 -8.15190 -6.25840 1.37064 1.39023 1.48081 2.39236 3.13928 3.37610 3.75027 3.80249 3.91485 3.97456 4.22267 4.32111 4.37130 4.48838 4.52904 4.60756 4.63206 4.67168 4.70702 4.72504 4.78635 4.85227 4.98362 5.01079 5.05735 5.20521 5.22409 5.28876 5.35863 5.37895 5.39939 5.49548 5.53636 5.55958 5.66094 5.72056 5.83788 6.10141 6.33252 6.39377 6.47583 6.71457 6.87990 7.42203 8.92802 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.008042 C = 0.007342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.221493 B = 3480.945704 C = 3812.548292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.536 5.536 3 C 0.065 3.935 4 C 0.024 3.976 5 H -0.002 1.002 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.017 3.983 9 N -0.917 5.917 10 Si 0.947 3.053 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.097 3.903 15 H 0.073 0.927 16 N -0.833 5.833 17 C 0.079 3.921 18 H 0.081 0.919 19 C -0.094 4.094 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.125 4.125 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.260 0.740 31 H 0.338 0.662 32 H 0.335 0.665 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.042 -7.959 -8.989 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.259 5.259 3 C -0.063 4.063 4 C 0.004 3.996 5 H 0.017 0.983 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.183 4.183 9 N -0.556 5.556 10 Si 0.773 3.227 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.015 4.015 15 H 0.091 0.909 16 N -0.359 5.359 17 C -0.030 4.030 18 H 0.099 0.901 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.151 4.151 24 C -0.162 4.162 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.256 -8.556 -8.935 14.873 hybrid contribution 0.690 2.415 0.391 2.542 sum -7.566 -6.141 -8.544 12.960 Atomic orbital electron populations 1.22685 0.88329 1.02030 1.00947 1.64932 1.08464 1.16234 1.36296 1.23072 0.97096 0.87484 0.98601 1.20164 0.92108 0.93995 0.93379 0.98348 1.21358 1.44065 0.96577 0.94079 0.93013 1.25721 0.95563 1.01804 0.95162 1.70091 1.49552 1.30373 1.05557 0.85716 0.78472 0.80098 0.78371 1.20288 1.21152 1.19170 1.22397 0.90209 0.90673 0.98240 0.90874 1.59135 1.06605 1.34827 1.35340 1.22475 0.93808 0.98286 0.88402 0.90081 1.21638 0.98791 0.95626 0.95308 1.21454 0.98586 0.99682 0.94452 1.21502 0.99298 0.96100 0.97999 1.21525 1.00916 0.95710 0.97285 1.21509 0.98379 1.00016 0.95242 1.21952 0.99419 0.96336 0.98496 0.90231 0.92593 0.93985 0.95036 0.94336 0.93121 0.85018 0.85367 0.90068 0.93189 0.91662 0.91285 0.91115 0.90705 0.93252 0.91282 0.92629 0.92753 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 8.23 127.69 1.05 1.32 16 2 N -0.54 -21.01 5.54 -884.10 -4.89 -25.91 16 3 C 0.07 3.10 4.94 86.65 0.43 3.53 16 4 C 0.02 1.20 2.60 -10.34 -0.03 1.17 16 5 H 0.00 -0.09 8.02 -2.39 -0.02 -0.11 16 6 C -0.52 -28.01 8.48 25.60 0.22 -27.79 16 7 H 0.05 2.75 7.55 -2.91 -0.02 2.73 16 8 C 0.02 0.93 5.36 84.66 0.45 1.38 16 9 N -0.92 -53.23 12.43 21.45 0.27 -52.96 16 10 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.10 3.87 2.33 45.79 0.11 3.98 16 15 H 0.07 3.09 4.53 -2.39 -0.01 3.08 16 16 N -0.83 -29.94 9.16 -165.05 -1.51 -31.46 16 17 C 0.08 2.79 2.88 45.06 0.13 2.92 16 18 H 0.08 2.83 7.92 -2.39 -0.02 2.81 16 19 C -0.09 -2.77 1.41 -10.79 -0.02 -2.78 16 20 C -0.10 -2.72 5.03 30.60 0.15 -2.56 16 21 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 22 C -0.12 -2.63 5.92 30.60 0.18 -2.45 16 23 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 24 C -0.12 -4.04 3.48 30.59 0.11 -3.93 16 25 H 0.08 2.15 7.37 -2.39 -0.02 2.13 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.32 4.62 -2.39 -0.01 1.31 16 28 H 0.03 1.53 5.19 -2.38 -0.01 1.52 16 29 H 0.04 2.09 7.66 -2.39 -0.02 2.07 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.34 12.20 9.08 -89.69 -0.81 11.38 16 32 H 0.33 11.81 8.94 -89.69 -0.80 11.01 16 33 H 0.08 2.19 6.10 -2.39 -0.01 2.18 16 34 H 0.05 1.50 6.93 -2.39 -0.02 1.49 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.97 3.48 -2.39 -0.01 1.97 16 43 H 0.05 1.80 6.08 -2.39 -0.01 1.79 16 Total: -1.00 -58.09 307.38 -1.57 -59.66 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.61 Total: 35.37 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 3.15 Total: -30.13 kcal Atomic # 7 Polarization: -104.18 SS G_CDS: -6.14 Total: -110.32 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -58.09 -1.57 -59.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259788198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.188 kcal (2) G-P(sol) polarization free energy of solvation -58.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds