Wall clock time and date at job start Mon Mar 30 2020 04:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48555 * 111.00167 * 2 1 4 4 C 1.54387 * 104.59333 * 200.95860 * 3 2 1 5 5 H 1.08997 * 110.32301 * 264.95561 * 4 3 2 6 6 C 1.50700 * 110.40698 * 142.79673 * 4 3 2 7 7 H 1.08004 * 119.99510 * 244.31253 * 6 4 3 8 8 C 1.37870 * 120.00596 * 64.31234 * 6 4 3 9 9 N 1.31522 * 119.99544 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 120.00342 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47327 * 59.99701 * 10 8 6 12 12 H 1.48500 * 109.47302 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46584 * 299.99724 * 10 8 6 14 14 C 1.54262 * 105.05800 * 23.85578 * 4 3 2 15 15 H 1.08996 * 110.32260 * 118.90023 * 14 4 3 16 16 N 1.46905 * 110.40438 * 241.05958 * 14 4 3 17 17 C 1.48564 * 110.99992 * 244.57906 * 2 1 3 18 18 H 1.09002 * 110.50974 * 40.21237 * 17 2 1 19 19 C 1.53000 * 110.41085 * 277.82370 * 17 2 1 20 20 C 1.53000 * 109.47246 * 53.15345 * 19 17 2 21 21 C 1.53000 * 109.47246 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.46824 * 299.99765 * 21 20 19 23 23 C 1.53000 * 109.47017 * 60.00095 * 22 21 20 24 24 C 1.53000 * 109.47246 * 299.99647 * 23 22 21 25 25 H 1.09001 * 109.47439 * 165.94566 * 1 2 3 26 26 H 1.08999 * 109.47205 * 285.94941 * 1 2 3 27 27 H 1.08998 * 109.46735 * 45.94626 * 1 2 3 28 28 H 1.09001 * 110.41170 * 82.18541 * 3 2 1 29 29 H 1.08994 * 110.41161 * 319.73645 * 3 2 1 30 30 H 0.97000 * 119.99366 * 180.02562 * 9 8 6 31 31 H 1.00900 * 111.00199 * 295.68905 * 16 14 4 32 32 H 1.00900 * 110.99992 * 59.64451 * 16 14 4 33 33 H 1.09001 * 109.47213 * 293.15177 * 19 17 2 34 34 H 1.09001 * 109.47152 * 59.99794 * 20 19 17 35 35 H 1.08999 * 109.47291 * 299.99663 * 20 19 17 36 36 H 1.08993 * 109.47071 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47213 * 59.99831 * 21 20 19 38 38 H 1.08999 * 109.46759 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47504 * 299.99709 * 22 21 20 40 40 H 1.09001 * 109.47152 * 59.99853 * 23 22 21 41 41 H 1.09001 * 109.47244 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.46842 * 300.00121 * 24 23 22 43 43 H 1.09001 * 109.47148 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2500 -0.5344 5 1 4.1484 1.1747 0.2934 6 6 3.7921 2.4241 -1.4124 7 1 3.9971 2.2715 -2.4618 8 6 3.8493 3.6930 -0.8763 9 7 3.5991 3.8788 0.4015 10 14 4.2808 5.1484 -1.9648 11 1 3.2799 5.2647 -3.0555 12 1 4.2761 6.3921 -1.1534 13 1 5.6302 4.9453 -2.5507 14 6 3.4433 -0.0541 -1.3585 15 1 3.6937 0.1553 -2.3985 16 7 4.3937 -1.0193 -0.7901 17 6 2.0014 -0.5954 -1.2527 18 1 1.4104 -0.2730 -2.1100 19 6 2.0104 -2.1223 -1.1560 20 6 0.6169 -2.6167 -0.7627 21 6 0.6261 -4.1435 -0.6654 22 6 1.0147 -4.7386 -2.0203 23 6 2.4083 -4.2442 -2.4136 24 6 2.3991 -2.7173 -2.5109 25 1 -0.3634 -0.9969 -0.2496 26 1 -0.3633 0.2824 0.9881 27 1 -0.3633 0.7146 -0.7386 28 1 2.0080 1.7915 1.0121 29 1 1.4100 2.0211 -0.6602 30 1 3.6390 4.7716 0.7786 31 1 5.3401 -0.6754 -0.8540 32 1 4.1541 -1.2436 0.1641 33 1 2.7329 -2.4344 -0.4018 34 1 -0.1055 -2.3046 -1.5169 35 1 0.3402 -2.1931 0.2027 36 1 -0.3668 -4.4957 -0.3857 37 1 1.3484 -4.4552 0.0890 38 1 1.0217 -5.8263 -1.9509 39 1 0.2924 -4.4270 -2.7747 40 1 3.1306 -4.5559 -1.6591 41 1 2.6854 -4.6684 -3.3786 42 1 1.6768 -2.4057 -3.2653 43 1 3.3920 -2.3651 -2.7906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259788201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:49 Heat of formation + Delta-G solvation = -7.057699 kcal Electronic energy + Delta-G solvation = -20222.825877 eV Core-core repulsion = 17494.905529 eV Total energy + Delta-G solvation = -2727.920349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49393 -37.06559 -33.60816 -32.80958 -30.97042 -30.41302 -28.77661 -26.55966 -25.17434 -23.29232 -22.29047 -21.74777 -19.62221 -19.41266 -18.64332 -16.71842 -15.60664 -15.28521 -14.61655 -14.25226 -13.89597 -13.79344 -13.65493 -13.52908 -13.25593 -12.70473 -12.33063 -12.07133 -11.80545 -11.55676 -11.32148 -11.01456 -10.95506 -10.91773 -10.82263 -10.74269 -10.57101 -10.36583 -10.15684 -9.96832 -9.78546 -9.32730 -9.26416 -8.98143 -8.48794 -7.72828 -7.55466 -6.08179 -4.12433 3.27317 3.32548 3.34870 4.37709 4.81120 4.99216 5.05691 5.10775 5.24510 5.43891 5.46487 5.61461 5.73982 5.77376 5.79475 5.84838 5.86610 5.91293 5.99369 6.10931 6.16692 6.23462 6.31504 6.36604 6.40121 6.43604 6.52833 6.55323 6.60960 6.73528 6.85457 6.94846 6.98609 7.14147 7.44196 7.59658 7.75919 7.83018 7.99752 8.03395 8.23460 8.43322 8.91436 9.52509 11.00845 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.005948 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.222815 B = 4705.965959 C = 5094.639196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.520 5.520 3 C 0.059 3.941 4 C 0.022 3.978 5 H 0.034 0.966 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.064 3.936 9 N -0.888 5.888 10 Si 0.890 3.110 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.094 3.906 15 H 0.073 0.927 16 N -0.838 5.838 17 C 0.073 3.927 18 H 0.039 0.961 19 C -0.054 4.054 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.107 4.107 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.332 0.668 32 H 0.335 0.665 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 -13.047 -2.385 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.244 5.244 3 C -0.069 4.069 4 C 0.001 3.999 5 H 0.052 0.948 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.718 3.282 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.018 4.018 15 H 0.091 0.909 16 N -0.366 5.366 17 C -0.036 4.036 18 H 0.057 0.943 19 C -0.073 4.073 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.152 4.152 24 C -0.145 4.145 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.813 -13.685 -2.337 14.694 hybrid contribution -0.035 2.399 -0.569 2.466 sum -4.848 -11.286 -2.906 12.622 Atomic orbital electron populations 1.23058 0.90457 1.01896 1.00512 1.65368 1.06363 1.18585 1.34063 1.23192 0.97507 0.85492 1.00675 1.20127 0.92652 0.92276 0.94813 0.94825 1.21160 1.47712 0.91640 0.95177 0.92649 1.25002 0.94975 0.98912 0.94938 1.69958 1.48771 1.22268 1.11540 0.86687 0.79051 0.81933 0.80527 1.20320 1.21287 1.20209 1.22289 0.90014 0.90834 0.98664 0.90905 1.59198 1.05628 1.46556 1.25169 1.22640 0.95726 0.94028 0.91210 0.94307 1.20839 0.95771 0.93188 0.97513 1.22047 0.98120 0.94443 1.01763 1.21548 1.00427 0.96443 0.97106 1.21541 0.97509 0.99105 0.97453 1.21484 0.96530 0.96628 1.00562 1.21482 1.01933 0.94065 0.96983 0.89875 0.92483 0.96404 0.91255 0.95035 0.92907 0.85577 0.85265 0.89639 0.93093 0.90173 0.92970 0.92171 0.92951 0.92612 0.92054 0.92956 0.93618 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.18 8.90 60.07 0.53 0.36 16 2 N -0.52 -10.11 5.13 -230.35 -1.18 -11.30 16 3 C 0.06 1.38 5.21 -2.18 -0.01 1.37 16 4 C 0.02 0.53 2.70 -90.38 -0.24 0.29 16 5 H 0.03 0.89 7.95 -51.93 -0.41 0.48 16 6 C -0.52 -13.90 8.38 -34.44 -0.29 -14.19 16 7 H 0.06 1.48 7.36 -52.48 -0.39 1.09 16 8 C 0.06 1.75 5.34 -17.82 -0.10 1.66 16 9 N -0.89 -25.21 12.57 55.43 0.70 -24.51 16 10 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.09 1.88 3.14 -66.33 -0.21 1.67 16 15 H 0.07 1.56 7.42 -51.93 -0.39 1.17 16 16 N -0.84 -14.46 7.30 -3.50 -0.03 -14.48 16 17 C 0.07 1.34 1.98 -66.07 -0.13 1.21 16 18 H 0.04 0.76 7.99 -51.93 -0.42 0.34 16 19 C -0.05 -0.82 1.58 -90.62 -0.14 -0.96 16 20 C -0.13 -1.72 3.53 -26.73 -0.09 -1.82 16 21 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 22 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 23 C -0.11 -1.38 5.92 -26.73 -0.16 -1.54 16 24 C -0.11 -1.51 5.04 -26.73 -0.13 -1.64 16 25 H 0.08 1.22 3.66 -51.93 -0.19 1.03 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.02 0.31 7.78 -51.93 -0.40 -0.09 16 28 H 0.07 1.78 8.04 -51.93 -0.42 1.36 16 29 H 0.03 0.80 7.47 -51.93 -0.39 0.42 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.33 5.66 9.08 -39.29 -0.36 5.30 16 32 H 0.34 5.79 8.03 -39.29 -0.32 5.47 16 33 H 0.09 1.39 6.25 -51.93 -0.32 1.06 16 34 H 0.05 0.70 7.61 -51.93 -0.40 0.30 16 35 H 0.08 1.15 5.55 -51.93 -0.29 0.86 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.15 7.28 -51.93 -0.38 0.77 16 LS Contribution 314.34 15.07 4.74 4.74 Total: -1.00 -26.70 314.34 -9.66 -36.37 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -7.57 Total: 9.72 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.29 Total: -16.62 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.51 Total: -50.29 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.70 -9.66 -36.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259788201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.308 kcal (2) G-P(sol) polarization free energy of solvation -26.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds