Wall clock time and date at job start Mon Mar 30 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48555 * 111.00167 * 2 1 4 4 C 1.54387 * 104.59333 * 200.95860 * 3 2 1 5 5 H 1.08997 * 110.32301 * 264.95561 * 4 3 2 6 6 C 1.50700 * 110.40698 * 142.79673 * 4 3 2 7 7 H 1.08004 * 119.99510 * 244.31253 * 6 4 3 8 8 C 1.37870 * 120.00596 * 64.31234 * 6 4 3 9 9 N 1.31522 * 119.99544 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 120.00342 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47327 * 59.99701 * 10 8 6 12 12 H 1.48500 * 109.47302 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46584 * 299.99724 * 10 8 6 14 14 C 1.54262 * 105.05800 * 23.85578 * 4 3 2 15 15 H 1.08996 * 110.32260 * 118.90023 * 14 4 3 16 16 N 1.46905 * 110.40438 * 241.05958 * 14 4 3 17 17 C 1.48564 * 110.99992 * 244.57906 * 2 1 3 18 18 H 1.09002 * 110.50974 * 40.21237 * 17 2 1 19 19 C 1.53000 * 110.41085 * 277.82370 * 17 2 1 20 20 C 1.53000 * 109.47246 * 53.15345 * 19 17 2 21 21 C 1.53000 * 109.47246 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.46824 * 299.99765 * 21 20 19 23 23 C 1.53000 * 109.47017 * 60.00095 * 22 21 20 24 24 C 1.53000 * 109.47246 * 299.99647 * 23 22 21 25 25 H 1.09001 * 109.47439 * 165.94566 * 1 2 3 26 26 H 1.08999 * 109.47205 * 285.94941 * 1 2 3 27 27 H 1.08998 * 109.46735 * 45.94626 * 1 2 3 28 28 H 1.09001 * 110.41170 * 82.18541 * 3 2 1 29 29 H 1.08994 * 110.41161 * 319.73645 * 3 2 1 30 30 H 0.97000 * 119.99366 * 180.02562 * 9 8 6 31 31 H 1.00900 * 111.00199 * 295.68905 * 16 14 4 32 32 H 1.00900 * 110.99992 * 59.64451 * 16 14 4 33 33 H 1.09001 * 109.47213 * 293.15177 * 19 17 2 34 34 H 1.09001 * 109.47152 * 59.99794 * 20 19 17 35 35 H 1.08999 * 109.47291 * 299.99663 * 20 19 17 36 36 H 1.08993 * 109.47071 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47213 * 59.99831 * 21 20 19 38 38 H 1.08999 * 109.46759 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.47504 * 299.99709 * 22 21 20 40 40 H 1.09001 * 109.47152 * 59.99853 * 23 22 21 41 41 H 1.09001 * 109.47244 * 179.97438 * 23 22 21 42 42 H 1.08994 * 109.46842 * 300.00121 * 24 23 22 43 43 H 1.09001 * 109.47148 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4434 1.2500 -0.5344 5 1 4.1484 1.1747 0.2934 6 6 3.7921 2.4241 -1.4124 7 1 3.9971 2.2715 -2.4618 8 6 3.8493 3.6930 -0.8763 9 7 3.5991 3.8788 0.4015 10 14 4.2808 5.1484 -1.9648 11 1 3.2799 5.2647 -3.0555 12 1 4.2761 6.3921 -1.1534 13 1 5.6302 4.9453 -2.5507 14 6 3.4433 -0.0541 -1.3585 15 1 3.6937 0.1553 -2.3985 16 7 4.3937 -1.0193 -0.7901 17 6 2.0014 -0.5954 -1.2527 18 1 1.4104 -0.2730 -2.1100 19 6 2.0104 -2.1223 -1.1560 20 6 0.6169 -2.6167 -0.7627 21 6 0.6261 -4.1435 -0.6654 22 6 1.0147 -4.7386 -2.0203 23 6 2.4083 -4.2442 -2.4136 24 6 2.3991 -2.7173 -2.5109 25 1 -0.3634 -0.9969 -0.2496 26 1 -0.3633 0.2824 0.9881 27 1 -0.3633 0.7146 -0.7386 28 1 2.0080 1.7915 1.0121 29 1 1.4100 2.0211 -0.6602 30 1 3.6390 4.7716 0.7786 31 1 5.3401 -0.6754 -0.8540 32 1 4.1541 -1.2436 0.1641 33 1 2.7329 -2.4344 -0.4018 34 1 -0.1055 -2.3046 -1.5169 35 1 0.3402 -2.1931 0.2027 36 1 -0.3668 -4.4957 -0.3857 37 1 1.3484 -4.4552 0.0890 38 1 1.0217 -5.8263 -1.9509 39 1 0.2924 -4.4270 -2.7747 40 1 3.1306 -4.5559 -1.6591 41 1 2.6854 -4.6684 -3.3786 42 1 1.6768 -2.4057 -3.2653 43 1 3.3920 -2.3651 -2.7906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259788201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:48 Heat of formation + Delta-G solvation = -24.175601 kcal Electronic energy + Delta-G solvation = -20223.568165 eV Core-core repulsion = 17494.905529 eV Total energy + Delta-G solvation = -2728.662637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95289 -38.36543 -35.32105 -34.61426 -32.39052 -31.48645 -30.41129 -28.12351 -26.91764 -25.06997 -23.37316 -22.99734 -21.38263 -20.51702 -20.18017 -18.68356 -17.09352 -16.87964 -16.39553 -15.73437 -15.22335 -15.13497 -14.89723 -14.83064 -14.67674 -14.16951 -14.07538 -13.42955 -13.21520 -12.97454 -12.93400 -12.80042 -12.63294 -12.36867 -12.29765 -12.02197 -11.93101 -11.83973 -11.68035 -11.40119 -11.11653 -11.03127 -10.66389 -10.55018 -10.42941 -9.35573 -9.22040 -8.18307 -6.29947 1.37618 1.38040 1.45998 2.37727 3.09637 3.29264 3.85066 3.89501 4.04643 4.06704 4.21512 4.25771 4.45550 4.53242 4.56480 4.59245 4.71133 4.72672 4.79177 4.81493 4.87132 4.91011 4.93985 5.06094 5.08241 5.17039 5.28686 5.31983 5.39883 5.43427 5.51041 5.54161 5.56685 5.60749 5.73305 5.79639 5.83430 6.00923 6.26738 6.32972 6.49301 6.74526 6.85573 7.38399 8.89286 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034808 B = 0.005948 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.222815 B = 4705.965959 C = 5094.639196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.515 5.515 3 C 0.074 3.926 4 C 0.019 3.981 5 H 0.005 0.995 6 C -0.535 4.535 7 H 0.052 0.948 8 C 0.016 3.984 9 N -0.917 5.917 10 Si 0.952 3.048 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.104 3.896 15 H 0.060 0.940 16 N -0.819 5.819 17 C 0.077 3.923 18 H 0.028 0.972 19 C -0.045 4.045 20 C -0.125 4.125 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.111 4.111 24 C -0.104 4.104 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.009 0.991 28 H 0.041 0.959 29 H 0.004 0.996 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.338 0.662 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -14.856 -3.198 16.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.239 5.239 3 C -0.054 4.054 4 C -0.002 4.002 5 H 0.023 0.977 6 C -0.573 4.573 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.556 5.556 10 Si 0.778 3.222 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.194 1.194 14 C -0.008 4.008 15 H 0.078 0.922 16 N -0.346 5.346 17 C -0.031 4.031 18 H 0.046 0.954 19 C -0.064 4.064 20 C -0.162 4.162 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.142 4.142 25 H 0.131 0.869 26 H 0.082 0.918 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.431 -15.517 -3.156 16.740 hybrid contribution 0.164 2.951 -0.304 2.971 sum -5.267 -12.566 -3.460 14.058 Atomic orbital electron populations 1.23184 0.88531 1.03482 1.00781 1.65335 1.08191 1.15601 1.34779 1.22794 0.97178 0.87341 0.98081 1.20098 0.92124 0.93850 0.94158 0.97708 1.21506 1.47562 0.92864 0.95391 0.92950 1.25761 0.94930 1.01556 0.96134 1.70084 1.49720 1.22716 1.13052 0.85700 0.79028 0.78666 0.78832 1.19851 1.20970 1.19405 1.22062 0.91975 0.89583 0.97228 0.92195 1.59167 1.05249 1.44979 1.25205 1.22672 0.94004 0.96298 0.90167 0.95380 1.20754 0.97044 0.90389 0.98182 1.21982 0.96653 0.96227 1.01303 1.21518 1.01487 0.94547 0.97583 1.21535 0.96646 1.00172 0.97013 1.21452 0.97409 0.94666 1.01288 1.21434 1.00912 0.95833 0.95997 0.86949 0.91828 0.97257 0.94044 0.97724 0.93000 0.85263 0.84924 0.90302 0.92821 0.90806 0.91330 0.92177 0.91152 0.92368 0.92158 0.91806 0.93714 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.39 8.90 127.69 1.14 0.75 16 2 N -0.52 -20.13 5.13 -882.68 -4.53 -24.66 16 3 C 0.07 3.64 5.21 86.45 0.45 4.09 16 4 C 0.02 0.93 2.70 -10.64 -0.03 0.90 16 5 H 0.00 0.26 7.95 -2.39 -0.02 0.25 16 6 C -0.53 -29.43 8.38 25.60 0.21 -29.22 16 7 H 0.05 2.84 7.36 -2.91 -0.02 2.82 16 8 C 0.02 0.87 5.34 84.65 0.45 1.33 16 9 N -0.92 -53.54 12.57 21.45 0.27 -53.27 16 10 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.10 4.23 3.14 45.81 0.14 4.38 16 15 H 0.06 2.60 7.42 -2.39 -0.02 2.58 16 16 N -0.82 -28.09 7.30 -164.97 -1.20 -29.29 16 17 C 0.08 2.82 1.98 45.06 0.09 2.91 16 18 H 0.03 1.09 7.99 -2.39 -0.02 1.07 16 19 C -0.04 -1.29 1.58 -10.79 -0.02 -1.31 16 20 C -0.12 -3.07 3.53 30.59 0.11 -2.96 16 21 C -0.11 -2.28 5.92 30.60 0.18 -2.10 16 22 C -0.12 -2.17 5.92 30.60 0.18 -1.99 16 23 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 24 C -0.10 -2.75 5.04 30.60 0.15 -2.60 16 25 H 0.11 3.08 3.66 -2.39 -0.01 3.07 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.01 0.31 7.78 -2.39 -0.02 0.29 16 28 H 0.04 2.22 8.04 -2.39 -0.02 2.20 16 29 H 0.00 0.24 7.47 -2.39 -0.02 0.22 16 30 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.34 11.38 9.08 -89.69 -0.81 10.57 16 32 H 0.34 11.55 8.03 -89.69 -0.72 10.83 16 33 H 0.08 2.43 6.25 -2.39 -0.01 2.41 16 34 H 0.05 1.31 7.61 -2.39 -0.02 1.29 16 35 H 0.07 1.93 5.55 -2.39 -0.01 1.91 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.75 7.28 -2.39 -0.02 1.73 16 Total: -1.00 -58.39 314.34 -0.74 -59.13 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.54 Total: 30.29 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.25 Total: -28.00 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -5.47 Total: -107.22 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.39 -0.74 -59.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259788201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.951 kcal (2) G-P(sol) polarization free energy of solvation -58.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds