Wall clock time and date at job start Mon Mar 30 2020 04:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46947 * 111.00157 * 2 1 4 4 C 1.53051 * 109.38496 * 183.17922 * 3 2 1 5 5 N 1.46955 * 109.36033 * 301.63035 * 4 3 2 6 6 C 1.46899 * 110.99727 * 183.16710 * 5 4 3 7 7 H 1.08999 * 110.01805 * 321.97658 * 6 5 4 8 8 C 1.54266 * 110.03367 * 200.58373 * 6 5 4 9 9 C 1.54884 * 104.19728 * 217.10248 * 8 6 5 10 10 C 1.54887 * 102.74926 * 37.94360 * 9 8 6 11 11 C 1.53875 * 110.03665 * 83.41777 * 6 5 4 12 12 H 1.08994 * 110.03473 * 238.57283 * 11 6 5 13 13 C 1.53001 * 110.02867 * 359.97438 * 11 6 5 14 14 C 1.50698 * 109.47343 * 182.94496 * 13 11 6 15 15 H 1.08001 * 119.99458 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00412 * 179.97438 * 14 13 11 17 17 N 1.31511 * 119.99580 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47527 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47499 * 120.00560 * 18 16 14 21 21 H 1.48505 * 109.47186 * 240.00188 * 18 16 14 22 22 C 1.46954 * 110.90016 * 59.28797 * 5 4 3 23 23 C 1.46960 * 110.99860 * 123.80156 * 2 1 3 24 24 H 1.09000 * 109.47356 * 60.00090 * 1 2 3 25 25 H 1.09008 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47122 * 299.99655 * 1 2 3 27 27 H 1.09005 * 109.49138 * 303.16126 * 3 2 1 28 28 H 1.09009 * 109.49280 * 63.19715 * 3 2 1 29 29 H 1.08996 * 109.48804 * 61.57651 * 4 3 2 30 30 H 1.08999 * 109.48912 * 181.64022 * 4 3 2 31 31 H 1.09000 * 110.48497 * 335.78710 * 8 6 5 32 32 H 1.09009 * 110.48807 * 98.42381 * 8 6 5 33 33 H 1.09006 * 110.75746 * 156.25818 * 9 8 6 34 34 H 1.08997 * 110.76339 * 279.62687 * 9 8 6 35 35 H 1.09005 * 110.48705 * 80.73488 * 10 9 8 36 36 H 1.08998 * 110.49033 * 203.24777 * 10 9 8 37 37 H 1.09006 * 109.47335 * 302.95000 * 13 11 6 38 38 H 1.09008 * 109.46982 * 62.94955 * 13 11 6 39 39 H 0.97004 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49053 * 180.72317 * 22 5 4 41 41 H 1.09002 * 109.49331 * 60.65531 * 22 5 4 42 42 H 1.08998 * 109.49031 * 296.77419 * 23 2 1 43 43 H 1.09003 * 109.49276 * 56.82160 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3295 -0.0801 5 7 4.0500 0.5658 1.0597 6 6 5.5190 0.5658 1.0597 7 1 5.8921 0.4908 0.0383 8 6 6.0475 -0.6127 1.9033 9 6 7.3027 -0.0421 2.6088 10 6 6.8766 1.4088 2.9439 11 6 6.0462 1.8511 1.7214 12 1 6.6758 2.4003 1.0213 13 6 4.8753 2.7270 2.1716 14 6 5.4041 4.0134 2.7517 15 1 6.4689 4.1888 2.7946 16 6 4.5287 4.9668 3.2267 17 7 3.2321 4.7533 3.1740 18 14 5.1842 6.5615 3.9451 19 1 6.6681 6.5568 3.8888 20 1 4.6633 7.7093 3.1599 21 1 4.7424 6.6868 5.3573 22 6 3.5234 -0.8061 1.0598 23 6 1.9956 -0.7633 1.1401 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6012 1.9128 -0.8602 28 1 1.6934 1.8775 0.9172 29 1 3.8256 0.8486 -1.0104 30 1 3.9175 2.3453 -0.0508 31 1 5.3033 -0.9198 2.6381 32 1 6.3187 -1.4504 1.2608 33 1 7.5216 -0.6004 3.5191 34 1 8.1601 -0.0471 1.9358 35 1 6.2663 1.4283 3.8469 36 1 7.7529 2.0460 3.0631 37 1 4.2378 2.9494 1.3158 38 1 4.2960 2.1982 2.9286 39 1 2.6161 5.4242 3.5078 40 1 3.9177 -1.3470 1.9200 41 1 3.8253 -1.3116 0.1424 42 1 1.6938 -0.2821 2.0704 43 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:57 Heat of formation + Delta-G solvation = 12.101051 kcal Electronic energy + Delta-G solvation = -20165.976633 eV Core-core repulsion = 17438.887070 eV Total energy + Delta-G solvation = -2727.089563 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.50607 -37.31623 -33.97503 -32.93387 -30.98322 -29.63508 -28.61827 -26.02185 -25.49794 -23.30666 -23.19965 -21.88490 -19.94136 -19.38369 -18.14839 -16.53695 -15.74252 -15.03270 -14.78605 -14.56009 -14.50923 -14.29100 -14.12111 -13.59804 -13.21977 -12.58692 -12.34402 -11.92044 -11.81953 -11.70254 -11.34590 -11.17568 -11.02593 -10.87674 -10.77256 -10.50618 -10.45410 -10.37794 -10.18685 -9.96138 -9.85854 -9.45114 -8.93582 -8.68145 -8.15865 -8.10867 -7.55681 -5.85116 -3.84651 3.36669 3.44645 3.48412 4.20808 4.38223 4.56871 5.11239 5.21456 5.24590 5.30745 5.46653 5.50044 5.55634 5.61914 5.69707 5.78545 5.85537 5.89245 5.95579 5.96313 6.02282 6.13116 6.21450 6.23547 6.27528 6.32220 6.38927 6.46609 6.54313 6.62397 6.75033 6.93906 7.15984 7.23577 7.27604 7.36921 7.70142 7.80642 7.93889 8.17009 8.32089 8.64887 9.25297 9.77094 11.25215 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.007997 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.631016 B = 3500.654806 C = 4783.961867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.057 3.943 4 C 0.057 3.943 5 N -0.513 5.513 6 C 0.084 3.916 7 H 0.033 0.967 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.101 4.101 11 C -0.079 4.079 12 H 0.051 0.949 13 C 0.045 3.955 14 C -0.514 4.514 15 H 0.049 0.951 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.881 3.119 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.052 3.948 23 C 0.057 3.943 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.255 0.745 40 H 0.082 0.918 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -11.571 -5.131 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.070 4.070 4 C -0.070 4.070 5 N -0.238 5.238 6 C -0.024 4.024 7 H 0.051 0.949 8 C -0.161 4.161 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.098 4.098 12 H 0.069 0.931 13 C 0.008 3.992 14 C -0.553 4.553 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.710 3.290 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.213 1.213 22 C -0.077 4.077 23 C -0.071 4.071 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.687 -11.487 -5.096 12.585 hybrid contribution 0.231 1.004 0.402 1.106 sum -0.456 -10.483 -4.695 11.495 Atomic orbital electron populations 1.22308 0.87937 1.01332 1.00662 1.62235 1.07295 1.14923 1.42814 1.22153 0.95013 0.88331 1.01542 1.22357 0.93954 1.00157 0.90576 1.62240 1.07262 1.11705 1.42559 1.22412 0.86378 0.96705 0.96883 0.94933 1.22630 0.97827 0.96664 0.98981 1.22511 0.96790 0.97965 0.99233 1.22260 0.99003 0.93216 0.99411 1.21873 0.98663 0.93941 0.95316 0.93078 1.19117 0.91486 0.91766 0.96872 1.21484 0.92610 1.02148 1.39070 0.93232 1.24959 0.94897 0.98062 0.96432 1.69990 1.01216 1.34483 1.47634 0.86714 0.79043 0.84432 0.78833 1.19965 1.21314 1.21298 1.22264 0.93894 0.91161 1.00340 1.22150 0.95068 0.97549 0.92335 0.91704 0.91951 0.95533 0.91019 0.92699 0.95620 0.88245 0.90521 0.92919 0.92431 0.92479 0.91307 0.92787 0.95621 0.95606 0.93524 0.90025 0.95172 0.93777 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 60.06 0.58 0.91 16 2 N -0.55 -8.31 4.97 -242.75 -1.21 -9.52 16 3 C 0.06 0.98 5.62 -3.77 -0.02 0.96 16 4 C 0.06 1.03 4.76 -3.77 -0.02 1.01 16 5 N -0.51 -9.26 3.25 -225.16 -0.73 -9.99 16 6 C 0.08 1.49 2.85 -66.60 -0.19 1.30 16 7 H 0.03 0.56 7.92 -51.93 -0.41 0.15 16 8 C -0.12 -1.86 5.21 -25.07 -0.13 -1.99 16 9 C -0.13 -1.92 6.91 -24.74 -0.17 -2.09 16 10 C -0.10 -1.91 5.80 -25.07 -0.15 -2.06 16 11 C -0.08 -1.63 2.83 -89.50 -0.25 -1.88 16 12 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.04 1.12 3.28 -27.88 -0.09 1.03 16 14 C -0.51 -14.41 8.64 -34.44 -0.30 -14.71 16 15 H 0.05 1.37 7.66 -52.49 -0.40 0.97 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.88 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C 0.05 0.79 4.96 -3.77 -0.02 0.77 16 23 C 0.06 0.85 5.62 -3.76 -0.02 0.83 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.68 8.13 -51.92 -0.42 0.26 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 29 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 30 H 0.10 2.01 5.61 -51.93 -0.29 1.72 16 31 H 0.08 1.18 6.08 -51.93 -0.32 0.86 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.43 7.80 -51.93 -0.40 1.02 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.68 4.65 -51.93 -0.24 0.44 16 38 H 0.03 0.72 7.84 -51.92 -0.41 0.31 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.08 1.16 5.58 -51.93 -0.29 0.87 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -29.56 319.29 -10.10 -39.66 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.81 Total: -1.45 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.88 Total: -14.40 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -1.20 Total: -45.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.56 -10.10 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.766 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds