Wall clock time and date at job start Mon Mar 30 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46947 * 111.00157 * 2 1 4 4 C 1.53051 * 109.38496 * 183.17922 * 3 2 1 5 5 N 1.46955 * 109.36033 * 301.63035 * 4 3 2 6 6 C 1.46899 * 110.99727 * 183.16710 * 5 4 3 7 7 H 1.08999 * 110.01805 * 321.97658 * 6 5 4 8 8 C 1.54266 * 110.03367 * 200.58373 * 6 5 4 9 9 C 1.54884 * 104.19728 * 217.10248 * 8 6 5 10 10 C 1.54887 * 102.74926 * 37.94360 * 9 8 6 11 11 C 1.53875 * 110.03665 * 83.41777 * 6 5 4 12 12 H 1.08994 * 110.03473 * 238.57283 * 11 6 5 13 13 C 1.53001 * 110.02867 * 359.97438 * 11 6 5 14 14 C 1.50698 * 109.47343 * 182.94496 * 13 11 6 15 15 H 1.08001 * 119.99458 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00412 * 179.97438 * 14 13 11 17 17 N 1.31511 * 119.99580 * 0.02562 * 16 14 13 18 18 Si 1.86790 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47527 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47499 * 120.00560 * 18 16 14 21 21 H 1.48505 * 109.47186 * 240.00188 * 18 16 14 22 22 C 1.46954 * 110.90016 * 59.28797 * 5 4 3 23 23 C 1.46960 * 110.99860 * 123.80156 * 2 1 3 24 24 H 1.09000 * 109.47356 * 60.00090 * 1 2 3 25 25 H 1.09008 * 109.47072 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47122 * 299.99655 * 1 2 3 27 27 H 1.09005 * 109.49138 * 303.16126 * 3 2 1 28 28 H 1.09009 * 109.49280 * 63.19715 * 3 2 1 29 29 H 1.08996 * 109.48804 * 61.57651 * 4 3 2 30 30 H 1.08999 * 109.48912 * 181.64022 * 4 3 2 31 31 H 1.09000 * 110.48497 * 335.78710 * 8 6 5 32 32 H 1.09009 * 110.48807 * 98.42381 * 8 6 5 33 33 H 1.09006 * 110.75746 * 156.25818 * 9 8 6 34 34 H 1.08997 * 110.76339 * 279.62687 * 9 8 6 35 35 H 1.09005 * 110.48705 * 80.73488 * 10 9 8 36 36 H 1.08998 * 110.49033 * 203.24777 * 10 9 8 37 37 H 1.09006 * 109.47335 * 302.95000 * 13 11 6 38 38 H 1.09008 * 109.46982 * 62.94955 * 13 11 6 39 39 H 0.97004 * 119.99937 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49053 * 180.72317 * 22 5 4 41 41 H 1.09002 * 109.49331 * 60.65531 * 22 5 4 42 42 H 1.08998 * 109.49031 * 296.77419 * 23 2 1 43 43 H 1.09003 * 109.49276 * 56.82160 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3295 -0.0801 5 7 4.0500 0.5658 1.0597 6 6 5.5190 0.5658 1.0597 7 1 5.8921 0.4908 0.0383 8 6 6.0475 -0.6127 1.9033 9 6 7.3027 -0.0421 2.6088 10 6 6.8766 1.4088 2.9439 11 6 6.0462 1.8511 1.7214 12 1 6.6758 2.4003 1.0213 13 6 4.8753 2.7270 2.1716 14 6 5.4041 4.0134 2.7517 15 1 6.4689 4.1888 2.7946 16 6 4.5287 4.9668 3.2267 17 7 3.2321 4.7533 3.1740 18 14 5.1842 6.5615 3.9451 19 1 6.6681 6.5568 3.8888 20 1 4.6633 7.7093 3.1599 21 1 4.7424 6.6868 5.3573 22 6 3.5234 -0.8061 1.0598 23 6 1.9956 -0.7633 1.1401 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6012 1.9128 -0.8602 28 1 1.6934 1.8775 0.9172 29 1 3.8256 0.8486 -1.0104 30 1 3.9175 2.3453 -0.0508 31 1 5.3033 -0.9198 2.6381 32 1 6.3187 -1.4504 1.2608 33 1 7.5216 -0.6004 3.5191 34 1 8.1601 -0.0471 1.9358 35 1 6.2663 1.4283 3.8469 36 1 7.7529 2.0460 3.0631 37 1 4.2378 2.9494 1.3158 38 1 4.2960 2.1982 2.9286 39 1 2.6161 5.4242 3.5078 40 1 3.9177 -1.3470 1.9200 41 1 3.8253 -1.3116 0.1424 42 1 1.6938 -0.2821 2.0704 43 1 1.6010 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:56 Heat of formation + Delta-G solvation = -6.525929 kcal Electronic energy + Delta-G solvation = -20166.784360 eV Core-core repulsion = 17438.887070 eV Total energy + Delta-G solvation = -2727.897290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88658 -38.66905 -35.39924 -34.91942 -32.54580 -31.24731 -29.89581 -27.68253 -27.02249 -24.67576 -24.60361 -23.65785 -21.27150 -20.74917 -19.67765 -18.53001 -17.26792 -16.52456 -16.40322 -16.02962 -15.87550 -15.71567 -15.52544 -14.95536 -14.53445 -14.31149 -13.89513 -13.53333 -13.25543 -13.04442 -12.93400 -12.79993 -12.61885 -12.45160 -12.24327 -12.13283 -11.97551 -11.77453 -11.60407 -11.52424 -11.22579 -11.21082 -10.80850 -10.70469 -10.32312 -9.38982 -8.93551 -8.07653 -6.14866 1.37858 1.38934 1.50814 2.45268 2.99077 3.05545 3.24280 3.78788 3.88671 3.99406 4.15481 4.18340 4.24011 4.38771 4.44502 4.52905 4.60727 4.63440 4.66945 4.74062 4.77472 4.82521 4.90757 4.93984 4.94942 4.97603 5.06895 5.10606 5.17203 5.20066 5.30616 5.40014 5.55085 5.63078 5.72299 5.98077 6.04951 6.10980 6.15815 6.34839 6.42020 6.51181 7.06859 7.51100 9.02533 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.007997 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.631016 B = 3500.654806 C = 4783.961867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.066 3.934 4 C 0.064 3.936 5 N -0.539 5.539 6 C 0.087 3.913 7 H 0.041 0.959 8 C -0.115 4.115 9 C -0.114 4.114 10 C -0.102 4.102 11 C -0.081 4.081 12 H 0.042 0.958 13 C 0.062 3.938 14 C -0.531 4.531 15 H 0.048 0.952 16 C 0.001 3.999 17 N -0.928 5.928 18 Si 0.949 3.051 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.054 3.946 23 C 0.057 3.943 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.014 0.986 27 H 0.083 0.917 28 H 0.012 0.988 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.007 0.993 38 H -0.012 1.012 39 H 0.256 0.744 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.018 0.982 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 -13.350 -5.701 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.063 4.063 4 C -0.064 4.064 5 N -0.264 5.264 6 C -0.021 4.021 7 H 0.059 0.941 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.140 4.140 11 C -0.100 4.100 12 H 0.061 0.939 13 C 0.025 3.975 14 C -0.569 4.569 15 H 0.067 0.933 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.073 4.073 23 C -0.071 4.071 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.032 0.968 27 H 0.102 0.898 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.007 0.993 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.271 -13.278 -5.669 14.440 hybrid contribution -0.111 1.579 0.576 1.684 sum 0.161 -11.700 -5.093 12.761 Atomic orbital electron populations 1.22409 0.86266 1.02969 1.00630 1.62301 1.08826 1.13164 1.42732 1.22000 0.94760 0.89595 0.99910 1.22163 0.94325 0.98560 0.91306 1.62141 1.07718 1.13680 1.42856 1.22351 0.86297 0.96037 0.97455 0.94112 1.22604 0.97453 0.96323 0.98868 1.22457 0.97360 0.94767 1.00586 1.22179 0.98071 0.96414 0.97321 1.21798 0.97042 0.94941 0.96230 0.93915 1.18832 0.92500 0.91354 0.94816 1.21890 0.92622 1.03419 1.39005 0.93332 1.25804 0.95128 1.01682 0.96940 1.70134 1.02463 1.35695 1.48594 0.85641 0.78790 0.80068 0.77985 1.18985 1.20719 1.20856 1.22325 0.94024 0.89539 1.01430 1.22229 0.95095 0.98789 0.90992 0.90596 0.89432 0.96751 0.89821 0.96935 0.94259 0.91580 0.90864 0.89761 0.90402 0.90559 0.94044 0.93097 0.97451 0.99339 0.93484 0.88723 0.93948 0.96383 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.60 127.69 1.23 1.83 16 2 N -0.55 -16.06 4.97 -921.92 -4.58 -20.64 16 3 C 0.07 2.32 5.62 86.31 0.49 2.80 16 4 C 0.06 2.38 4.76 86.31 0.41 2.79 16 5 N -0.54 -19.58 3.25 -866.26 -2.82 -22.40 16 6 C 0.09 2.98 2.85 45.64 0.13 3.11 16 7 H 0.04 1.34 7.92 -2.39 -0.02 1.32 16 8 C -0.12 -3.15 5.21 31.67 0.16 -2.98 16 9 C -0.11 -3.13 6.91 31.88 0.22 -2.91 16 10 C -0.10 -3.85 5.80 31.67 0.18 -3.67 16 11 C -0.08 -3.40 2.83 -10.07 -0.03 -3.43 16 12 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 13 C 0.06 3.30 3.28 29.85 0.10 3.39 16 14 C -0.53 -30.80 8.64 25.60 0.22 -30.58 16 15 H 0.05 2.76 7.66 -2.91 -0.02 2.73 16 16 C 0.00 0.09 5.46 84.66 0.46 0.55 16 17 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 18 Si 0.95 45.81 29.54 68.60 2.03 47.83 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.05 1.57 4.96 86.31 0.43 2.00 16 23 C 0.06 1.62 5.62 86.31 0.49 2.11 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.09 1.68 8.13 -2.38 -0.02 1.66 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.08 2.66 8.14 -2.38 -0.02 2.65 16 28 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.07 2.85 5.61 -2.39 -0.01 2.84 16 31 H 0.07 2.07 6.08 -2.39 -0.01 2.06 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.76 7.80 -2.38 -0.02 1.74 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.01 0.42 4.65 -2.38 -0.01 0.41 16 38 H -0.01 -0.71 7.84 -2.38 -0.02 -0.73 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 40 H 0.09 2.48 5.58 -2.39 -0.01 2.47 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 Total: -1.00 -66.35 319.29 0.35 -66.01 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.95 Total: 11.55 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.49 Total: -24.99 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -7.11 Total: -100.40 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.35 0.35 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.480 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds