Wall clock time and date at job start Mon Mar 30 2020 04:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46952 * 110.99993 * 2 1 4 4 C 1.53056 * 109.36419 * 183.18626 * 3 2 1 5 5 N 1.46956 * 109.36232 * 301.59950 * 4 3 2 6 6 C 1.46903 * 110.99899 * 183.18554 * 5 4 3 7 7 H 1.09002 * 110.02090 * 301.39300 * 6 5 4 8 8 C 1.54268 * 110.07144 * 62.80490 * 6 5 4 9 9 C 1.54898 * 104.19602 * 142.91527 * 8 6 5 10 10 C 1.54886 * 102.74779 * 322.06235 * 9 8 6 11 11 C 1.53869 * 110.03619 * 179.97438 * 6 5 4 12 12 H 1.09004 * 110.03041 * 359.97438 * 11 6 5 13 13 C 1.52996 * 110.03340 * 121.38102 * 11 6 5 14 14 C 1.50702 * 109.47159 * 185.00201 * 13 11 6 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.46952 * 110.88223 * 59.32117 * 5 4 3 23 23 C 1.46956 * 110.99606 * 123.79901 * 2 1 3 24 24 H 1.09002 * 109.47160 * 59.99959 * 1 2 3 25 25 H 1.09001 * 109.47154 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47053 * 300.00335 * 1 2 3 27 27 H 1.08991 * 109.49229 * 63.21919 * 3 2 1 28 28 H 1.09000 * 109.50731 * 303.16093 * 3 2 1 29 29 H 1.08998 * 109.49017 * 181.62831 * 4 3 2 30 30 H 1.09006 * 109.50364 * 61.57308 * 4 3 2 31 31 H 1.09001 * 110.48869 * 261.59709 * 8 6 5 32 32 H 1.09000 * 110.48437 * 24.10938 * 8 6 5 33 33 H 1.09000 * 110.75195 * 80.37379 * 9 8 6 34 34 H 1.08994 * 110.75714 * 203.74462 * 9 8 6 35 35 H 1.09007 * 110.48413 * 279.26329 * 10 9 8 36 36 H 1.09002 * 110.48709 * 156.61762 * 10 9 8 37 37 H 1.09004 * 109.47066 * 65.00404 * 13 11 6 38 38 H 1.08994 * 109.47405 * 305.00234 * 13 11 6 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.49504 * 60.64944 * 22 5 4 41 41 H 1.09009 * 109.48673 * 180.71245 * 22 5 4 42 42 H 1.09001 * 109.48811 * 296.77303 * 23 2 1 43 43 H 1.08998 * 109.49265 * 56.84296 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0500 0.5658 1.0599 6 6 5.5190 0.5657 1.0599 7 1 5.8922 0.1360 0.1303 8 6 6.0485 2.0051 1.2265 9 6 7.3041 1.8469 2.1198 10 6 6.8775 0.7403 3.1161 11 6 6.0461 -0.2379 2.2615 12 1 5.2119 -0.6275 2.8450 13 6 6.9288 -1.3891 1.7755 14 6 7.3376 -2.2394 2.9507 15 1 7.0012 -1.9844 3.9448 16 6 8.1362 -3.3465 2.7560 17 7 8.5456 -3.6572 1.5455 18 14 8.6365 -4.4048 4.2117 19 1 7.4212 -4.9501 4.8682 20 1 9.4894 -5.5250 3.7393 21 1 9.3972 -3.5804 5.1848 22 6 3.5234 -0.8061 1.0599 23 6 1.9955 -0.7632 1.1401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6937 1.8773 0.9172 28 1 1.6014 1.9131 -0.8601 29 1 3.9178 2.3448 -0.0512 30 1 3.8257 0.8480 -1.0106 31 1 6.3197 2.4263 0.2585 32 1 5.3041 2.6308 1.7188 33 1 8.1609 1.5246 1.5282 34 1 7.5238 2.7761 2.6454 35 1 6.2678 1.1613 3.9156 36 1 7.7536 0.2386 3.5269 37 1 7.8186 -0.9857 1.2920 38 1 6.3724 -1.9978 1.0628 39 1 9.1077 -4.4359 1.4086 40 1 3.8253 -1.3116 0.1427 41 1 3.9177 -1.3470 1.9202 42 1 1.6937 -0.2820 2.0704 43 1 1.6012 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:00 Heat of formation + Delta-G solvation = -5.456595 kcal Electronic energy + Delta-G solvation = -19743.031241 eV Core-core repulsion = 17015.180322 eV Total energy + Delta-G solvation = -2727.850920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.51167 -37.51009 -34.23671 -32.87818 -31.01913 -29.77597 -28.76920 -26.24484 -25.52928 -23.41319 -23.32308 -22.05342 -19.89579 -19.48981 -18.40032 -16.59074 -15.93955 -15.03205 -14.90732 -14.77021 -14.61300 -14.40568 -14.18225 -13.65403 -13.39348 -12.63180 -12.35194 -12.14132 -11.93943 -11.79743 -11.54738 -11.27838 -11.18389 -11.09504 -10.82677 -10.72866 -10.47415 -10.34482 -10.23031 -10.17162 -9.90117 -9.50896 -9.06660 -8.91861 -8.35531 -8.30386 -7.89802 -5.95995 -3.97472 3.35140 3.39788 3.42152 3.96468 4.23013 4.49247 5.01480 5.05481 5.13189 5.29384 5.32424 5.36351 5.39636 5.52532 5.57500 5.60677 5.65441 5.72781 5.76184 5.87151 6.04677 6.06879 6.10888 6.19759 6.24549 6.28547 6.36402 6.41503 6.50235 6.59351 6.82492 6.94061 6.99547 7.04477 7.06685 7.26382 7.50322 7.60536 7.73073 7.90346 8.04541 8.47843 9.09192 9.66053 11.15195 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.005885 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.213569 B = 4756.907538 C = 5567.382024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.060 3.940 4 C 0.055 3.945 5 N -0.532 5.532 6 C 0.082 3.918 7 H 0.042 0.958 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.109 4.109 11 C -0.079 4.079 12 H 0.067 0.933 13 C 0.031 3.969 14 C -0.514 4.514 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.053 3.947 23 C 0.059 3.941 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.011 0.989 39 H 0.260 0.740 40 H 0.041 0.959 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.841 10.355 -2.386 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.069 4.069 4 C -0.074 4.074 5 N -0.257 5.257 6 C -0.026 4.026 7 H 0.060 0.940 8 C -0.151 4.151 9 C -0.159 4.159 10 C -0.147 4.147 11 C -0.097 4.097 12 H 0.085 0.915 13 C -0.006 4.006 14 C -0.552 4.552 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.075 4.075 23 C -0.069 4.069 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.033 0.967 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.739 10.215 -2.491 15.759 hybrid contribution 0.275 -0.711 0.652 1.003 sum -11.464 9.504 -1.839 15.004 Atomic orbital electron populations 1.22325 0.87685 1.01892 1.00292 1.62159 1.07380 1.14068 1.43556 1.22144 0.95140 0.89169 1.00418 1.22125 0.93655 0.98824 0.92785 1.62345 1.08360 1.13658 1.41318 1.22515 0.85139 0.95828 0.99126 0.93962 1.22393 0.97508 0.96242 0.98955 1.22439 0.97266 0.98419 0.97810 1.22296 1.00198 0.95427 0.96766 1.21922 0.98042 0.95919 0.93839 0.91490 1.19177 0.93968 0.91252 0.96180 1.21198 1.30309 1.09804 0.93897 0.92708 1.25007 0.96278 0.97640 0.95451 1.69959 1.35901 1.27216 1.20496 0.86718 0.78529 0.80077 0.83026 1.20321 1.21410 1.20292 1.22218 0.92910 0.90025 1.02372 1.22206 0.95453 0.97962 0.91296 0.91666 0.91493 0.95849 0.94265 0.90882 0.90539 0.94416 0.92999 0.91336 0.91664 0.92657 0.93404 0.90452 0.96650 0.97031 0.93064 0.94069 0.88771 0.94218 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.06 0.58 0.85 16 2 N -0.55 -7.17 4.97 -242.76 -1.21 -8.37 16 3 C 0.06 0.74 5.62 -3.77 -0.02 0.72 16 4 C 0.05 0.76 5.43 -3.76 -0.02 0.74 16 5 N -0.53 -8.63 4.50 -225.14 -1.01 -9.64 16 6 C 0.08 1.46 2.32 -66.60 -0.15 1.30 16 7 H 0.04 0.84 7.67 -51.93 -0.40 0.44 16 8 C -0.11 -1.75 5.23 -25.07 -0.13 -1.88 16 9 C -0.12 -1.99 6.91 -24.73 -0.17 -2.16 16 10 C -0.11 -2.07 6.19 -25.10 -0.16 -2.22 16 11 C -0.08 -1.61 1.98 -89.53 -0.18 -1.79 16 12 H 0.07 1.42 6.11 -51.93 -0.32 1.11 16 13 C 0.03 0.80 4.16 -27.88 -0.12 0.68 16 14 C -0.51 -14.23 8.16 -34.44 -0.28 -14.52 16 15 H 0.05 1.48 7.72 -52.49 -0.40 1.08 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.05 0.88 5.29 -3.77 -0.02 0.86 16 23 C 0.06 0.82 5.62 -3.76 -0.02 0.80 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.97 7.00 -51.93 -0.36 0.61 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.63 7.15 -51.93 -0.37 1.25 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.72 6.01 -51.92 -0.31 1.40 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -29.32 325.54 -10.44 -39.75 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.05 Total: -2.03 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -0.79 Total: -15.08 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -1.48 Total: -44.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.32 -10.44 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.297 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds