Wall clock time and date at job start Mon Mar 30 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46962 * 110.99328 * 2 1 4 4 C 1.53051 * 109.35891 * 183.18586 * 3 2 1 5 5 N 1.46957 * 109.36773 * 301.60212 * 4 3 2 6 6 C 1.46897 * 110.99980 * 183.19120 * 5 4 3 7 7 H 1.08994 * 110.05940 * 53.58198 * 6 5 4 8 8 C 1.54269 * 110.03281 * 292.16161 * 6 5 4 9 9 C 1.54889 * 104.19516 * 264.32772 * 8 6 5 10 10 C 1.54967 * 102.77906 * 322.08366 * 9 8 6 11 11 C 1.53878 * 110.03204 * 174.99843 * 6 5 4 12 12 H 1.09002 * 110.03244 * 359.94740 * 11 6 5 13 13 C 1.53004 * 110.03357 * 238.57137 * 11 6 5 14 14 C 1.50701 * 109.47211 * 175.69191 * 13 11 6 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.46951 * 110.88296 * 59.31907 * 5 4 3 23 23 C 1.46950 * 111.00070 * 123.79604 * 2 1 3 24 24 H 1.09003 * 109.46909 * 60.00126 * 1 2 3 25 25 H 1.09001 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47580 * 299.99956 * 1 2 3 27 27 H 1.08999 * 109.49095 * 63.22280 * 3 2 1 28 28 H 1.08994 * 109.51167 * 303.16468 * 3 2 1 29 29 H 1.08998 * 109.49173 * 181.63371 * 4 3 2 30 30 H 1.09002 * 109.50522 * 61.57829 * 4 3 2 31 31 H 1.09001 * 110.48052 * 23.00634 * 8 6 5 32 32 H 1.08996 * 110.48462 * 145.64893 * 8 6 5 33 33 H 1.09001 * 110.75419 * 80.37154 * 9 8 6 34 34 H 1.09001 * 110.75622 * 203.55595 * 9 8 6 35 35 H 1.08996 * 110.47538 * 279.23503 * 10 9 8 36 36 H 1.08998 * 110.52671 * 156.56639 * 10 9 8 37 37 H 1.09000 * 109.47211 * 55.68217 * 13 11 6 38 38 H 1.09007 * 109.46376 * 295.68759 * 13 11 6 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.48848 * 60.64779 * 22 5 4 41 41 H 1.08993 * 109.49138 * 180.71462 * 22 5 4 42 42 H 1.08996 * 109.49237 * 296.78734 * 23 2 1 43 43 H 1.09004 * 109.48799 * 56.82786 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3721 0.0000 4 6 3.5233 1.3292 -0.0802 5 7 4.0500 0.5660 1.0598 6 6 5.5190 0.5661 1.0598 7 1 5.8928 1.5889 1.0131 8 6 6.0476 -0.2451 -0.1412 9 6 6.3172 -1.6546 0.4415 10 6 6.8763 -1.3410 1.8524 11 6 6.0461 -0.1303 2.3267 12 1 5.2120 -0.4676 2.9419 13 6 6.9298 0.8310 3.1242 14 6 7.3526 0.1733 4.4124 15 1 7.0236 -0.8300 4.6398 16 6 8.1543 0.8546 5.3035 17 7 8.5547 2.0763 5.0267 18 14 8.6720 0.0421 6.9039 19 1 8.0927 -1.3232 6.9760 20 1 10.1535 -0.0448 6.9584 21 1 8.1811 0.8488 8.0500 22 6 3.5235 -0.8060 1.0598 23 6 1.9957 -0.7631 1.1401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6936 1.8775 0.9173 28 1 1.6012 1.9133 -0.8600 29 1 3.9177 2.3449 -0.0511 30 1 3.8256 0.8483 -1.0106 31 1 5.2952 -0.2952 -0.9283 32 1 6.9701 0.1935 -0.5214 33 1 5.3923 -2.2270 0.5117 34 1 7.0543 -2.1867 -0.1598 35 1 7.9329 -1.0798 1.7945 36 1 6.7281 -2.1900 2.5196 37 1 6.3699 1.7394 3.3465 38 1 7.8135 1.0832 2.5378 39 1 9.1184 2.5557 5.6538 40 1 3.8254 -1.3113 0.1425 41 1 3.9178 -1.3468 1.9200 42 1 1.6937 -0.2820 2.0703 43 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:02 Heat of formation + Delta-G solvation = -1.414922 kcal Electronic energy + Delta-G solvation = -19801.757016 eV Core-core repulsion = 17074.081357 eV Total energy + Delta-G solvation = -2727.675660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87833 -37.48615 -34.09408 -32.77005 -30.82289 -30.09477 -28.84158 -26.29368 -25.59876 -23.53755 -23.41507 -21.86018 -20.33278 -19.46992 -18.30092 -16.64668 -15.71275 -15.26277 -15.02051 -14.88832 -14.76396 -14.36771 -14.26647 -13.47934 -13.21659 -12.63030 -12.43555 -12.20704 -12.11914 -11.82862 -11.53909 -11.42293 -11.21893 -10.91822 -10.86074 -10.78075 -10.62144 -10.45039 -10.31665 -10.06608 -9.93494 -9.54334 -9.06226 -8.92323 -8.40697 -8.27584 -7.83634 -5.93115 -3.94009 3.34460 3.42094 3.45966 3.91595 4.21294 4.51597 4.95442 5.01505 5.11831 5.25563 5.28513 5.29793 5.39947 5.43364 5.47073 5.54237 5.58223 5.64824 5.71853 5.85364 5.96463 6.06199 6.09327 6.11765 6.13503 6.16832 6.24755 6.34276 6.42949 6.52179 6.58089 6.95879 6.98049 6.99764 7.11108 7.28189 7.46915 7.56303 7.77024 7.96044 8.07854 8.51705 9.12978 9.69372 11.18332 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.005225 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.410067 B = 5357.675443 C = 5601.338551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.083 3.917 7 H 0.082 0.918 8 C -0.154 4.154 9 C -0.131 4.131 10 C -0.106 4.106 11 C -0.075 4.075 12 H 0.067 0.933 13 C 0.032 3.968 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.053 3.947 23 C 0.055 3.945 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.258 0.742 40 H 0.045 0.955 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.263 -4.447 -11.525 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.074 4.074 5 N -0.250 5.250 6 C -0.025 4.025 7 H 0.100 0.900 8 C -0.193 4.193 9 C -0.168 4.168 10 C -0.144 4.144 11 C -0.093 4.093 12 H 0.086 0.914 13 C -0.005 4.005 14 C -0.549 4.549 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.075 4.075 23 C -0.073 4.073 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.172 -4.294 -11.442 17.249 hybrid contribution 0.339 -0.290 0.937 1.037 sum -11.834 -4.584 -10.506 16.475 Atomic orbital electron populations 1.22327 0.87680 1.01799 1.00462 1.62183 1.07414 1.14220 1.43295 1.22167 0.95131 0.89059 1.00699 1.22138 0.93643 0.98803 0.92847 1.62414 1.08191 1.13168 1.41238 1.22587 0.84958 0.99862 0.95064 0.89962 1.22981 1.00762 0.97131 0.98448 1.22700 1.00215 0.96141 0.97756 1.22342 1.00288 0.98008 0.93764 1.21892 0.97990 0.95593 0.93874 0.91448 1.19173 0.93633 0.93772 0.93915 1.21273 1.29755 1.00574 1.03253 0.92756 1.25002 0.96408 0.94876 0.98193 1.69973 1.36212 1.11169 1.36323 0.86611 0.78226 0.79575 0.84030 1.19810 1.21159 1.21152 1.22282 0.92938 0.90747 1.01518 1.22230 0.95526 0.97857 0.91707 0.91630 0.91591 0.95691 0.93984 0.90795 0.90474 0.94160 0.92403 0.91630 0.92003 0.92742 0.91387 0.92548 0.96533 0.96786 0.93223 0.93732 0.89643 0.94002 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.07 0.58 0.83 16 2 N -0.55 -6.67 4.97 -242.76 -1.21 -7.88 16 3 C 0.06 0.71 5.62 -3.76 -0.02 0.68 16 4 C 0.05 0.74 5.35 -3.77 -0.02 0.72 16 5 N -0.53 -8.38 4.66 -225.16 -1.05 -9.43 16 6 C 0.08 1.46 2.76 -66.59 -0.18 1.27 16 7 H 0.08 1.55 7.64 -51.93 -0.40 1.16 16 8 C -0.15 -2.36 5.64 -25.07 -0.14 -2.50 16 9 C -0.13 -1.98 6.33 -24.70 -0.16 -2.14 16 10 C -0.11 -1.97 5.88 -25.03 -0.15 -2.12 16 11 C -0.07 -1.52 2.03 -89.50 -0.18 -1.70 16 12 H 0.07 1.44 6.48 -51.93 -0.34 1.10 16 13 C 0.03 0.83 4.10 -27.88 -0.11 0.71 16 14 C -0.51 -14.33 8.67 -34.44 -0.30 -14.63 16 15 H 0.05 1.49 7.70 -52.49 -0.40 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 C 0.05 0.77 3.83 -3.77 -0.01 0.76 16 23 C 0.05 0.70 5.62 -3.77 -0.02 0.68 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 26 H 0.02 0.24 8.14 -51.94 -0.42 -0.18 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.04 0.55 6.49 -51.93 -0.34 0.21 16 31 H 0.06 0.83 5.61 -51.93 -0.29 0.54 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.88 5.85 -51.93 -0.30 0.58 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.37 7.77 -51.93 -0.40 0.96 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.01 0.38 8.02 -51.93 -0.42 -0.04 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.04 0.64 5.57 -51.93 -0.29 0.36 16 41 H 0.09 1.32 6.13 -51.93 -0.32 1.00 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 LS Contribution 317.89 15.07 4.79 4.79 Total: -1.00 -29.75 317.89 -10.27 -40.02 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.70 Total: -1.99 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -0.82 Total: -15.93 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -1.52 Total: -43.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.75 -10.27 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.603 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds