Wall clock time and date at job start Mon Mar 30 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46962 * 110.99328 * 2 1 4 4 C 1.53051 * 109.35891 * 183.18586 * 3 2 1 5 5 N 1.46957 * 109.36773 * 301.60212 * 4 3 2 6 6 C 1.46897 * 110.99980 * 183.19120 * 5 4 3 7 7 H 1.08994 * 110.05940 * 53.58198 * 6 5 4 8 8 C 1.54269 * 110.03281 * 292.16161 * 6 5 4 9 9 C 1.54889 * 104.19516 * 264.32772 * 8 6 5 10 10 C 1.54967 * 102.77906 * 322.08366 * 9 8 6 11 11 C 1.53878 * 110.03204 * 174.99843 * 6 5 4 12 12 H 1.09002 * 110.03244 * 359.94740 * 11 6 5 13 13 C 1.53004 * 110.03357 * 238.57137 * 11 6 5 14 14 C 1.50701 * 109.47211 * 175.69191 * 13 11 6 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.46951 * 110.88296 * 59.31907 * 5 4 3 23 23 C 1.46950 * 111.00070 * 123.79604 * 2 1 3 24 24 H 1.09003 * 109.46909 * 60.00126 * 1 2 3 25 25 H 1.09001 * 109.46638 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47580 * 299.99956 * 1 2 3 27 27 H 1.08999 * 109.49095 * 63.22280 * 3 2 1 28 28 H 1.08994 * 109.51167 * 303.16468 * 3 2 1 29 29 H 1.08998 * 109.49173 * 181.63371 * 4 3 2 30 30 H 1.09002 * 109.50522 * 61.57829 * 4 3 2 31 31 H 1.09001 * 110.48052 * 23.00634 * 8 6 5 32 32 H 1.08996 * 110.48462 * 145.64893 * 8 6 5 33 33 H 1.09001 * 110.75419 * 80.37154 * 9 8 6 34 34 H 1.09001 * 110.75622 * 203.55595 * 9 8 6 35 35 H 1.08996 * 110.47538 * 279.23503 * 10 9 8 36 36 H 1.08998 * 110.52671 * 156.56639 * 10 9 8 37 37 H 1.09000 * 109.47211 * 55.68217 * 13 11 6 38 38 H 1.09007 * 109.46376 * 295.68759 * 13 11 6 39 39 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.48848 * 60.64779 * 22 5 4 41 41 H 1.08993 * 109.49138 * 180.71462 * 22 5 4 42 42 H 1.08996 * 109.49237 * 296.78734 * 23 2 1 43 43 H 1.09004 * 109.48799 * 56.82786 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3721 0.0000 4 6 3.5233 1.3292 -0.0802 5 7 4.0500 0.5660 1.0598 6 6 5.5190 0.5661 1.0598 7 1 5.8928 1.5889 1.0131 8 6 6.0476 -0.2451 -0.1412 9 6 6.3172 -1.6546 0.4415 10 6 6.8763 -1.3410 1.8524 11 6 6.0461 -0.1303 2.3267 12 1 5.2120 -0.4676 2.9419 13 6 6.9298 0.8310 3.1242 14 6 7.3526 0.1733 4.4124 15 1 7.0236 -0.8300 4.6398 16 6 8.1543 0.8546 5.3035 17 7 8.5547 2.0763 5.0267 18 14 8.6720 0.0421 6.9039 19 1 8.0927 -1.3232 6.9760 20 1 10.1535 -0.0448 6.9584 21 1 8.1811 0.8488 8.0500 22 6 3.5235 -0.8060 1.0598 23 6 1.9957 -0.7631 1.1401 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6936 1.8775 0.9173 28 1 1.6012 1.9133 -0.8600 29 1 3.9177 2.3449 -0.0511 30 1 3.8256 0.8483 -1.0106 31 1 5.2952 -0.2952 -0.9283 32 1 6.9701 0.1935 -0.5214 33 1 5.3923 -2.2270 0.5117 34 1 7.0543 -2.1867 -0.1598 35 1 7.9329 -1.0798 1.7945 36 1 6.7281 -2.1900 2.5196 37 1 6.3699 1.7394 3.3465 38 1 7.8135 1.0832 2.5378 39 1 9.1184 2.5557 5.6538 40 1 3.8254 -1.3113 0.1425 41 1 3.9178 -1.3468 1.9200 42 1 1.6937 -0.2820 2.0703 43 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:02 Heat of formation + Delta-G solvation = -21.057516 kcal Electronic energy + Delta-G solvation = -19802.608783 eV Core-core repulsion = 17074.081357 eV Total energy + Delta-G solvation = -2728.527426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13526 -38.68259 -35.58781 -34.61680 -31.95297 -31.85502 -29.99042 -27.80203 -27.17006 -24.68045 -24.62191 -23.58295 -21.58157 -20.74654 -19.78038 -18.55839 -17.21659 -16.68356 -16.27923 -16.12933 -15.92671 -15.70803 -15.52603 -14.86437 -14.49295 -14.20779 -14.06869 -13.44013 -13.35034 -13.26644 -12.97696 -12.80361 -12.69048 -12.40862 -12.30362 -12.18449 -11.99372 -11.88810 -11.72573 -11.57257 -11.35322 -11.28057 -10.96843 -10.88682 -10.50968 -9.36951 -9.04961 -8.16033 -6.25505 1.39377 1.39819 1.52799 2.42409 2.97499 3.03041 3.17187 3.75811 3.82727 3.97131 4.09769 4.13869 4.20992 4.35449 4.43063 4.55775 4.61134 4.65007 4.66383 4.71110 4.75773 4.83052 4.85456 4.86438 4.97105 4.99880 5.01342 5.02559 5.07154 5.11490 5.25347 5.35011 5.48457 5.52527 5.63031 5.78928 5.90237 6.01205 6.06737 6.28529 6.30500 6.35274 6.91047 7.42968 8.96108 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028379 B = 0.005225 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.410067 B = 5357.675443 C = 5601.338551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.551 5.551 3 C 0.061 3.939 4 C 0.055 3.945 5 N -0.544 5.544 6 C 0.089 3.911 7 H 0.058 0.942 8 C -0.144 4.144 9 C -0.117 4.117 10 C -0.105 4.105 11 C -0.067 4.067 12 H 0.057 0.943 13 C 0.041 3.959 14 C -0.526 4.526 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.960 3.040 19 H -0.262 1.262 20 H -0.279 1.279 21 H -0.281 1.281 22 C 0.056 3.944 23 C 0.059 3.941 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.022 0.978 27 H 0.028 0.972 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.057 0.943 37 H -0.020 1.020 38 H -0.012 1.012 39 H 0.261 0.739 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.453 -6.214 -12.464 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.067 4.067 4 C -0.073 4.073 5 N -0.268 5.268 6 C -0.019 4.019 7 H 0.077 0.923 8 C -0.183 4.183 9 C -0.154 4.154 10 C -0.142 4.142 11 C -0.086 4.086 12 H 0.075 0.925 13 C 0.004 3.996 14 C -0.564 4.564 15 H 0.076 0.924 16 C -0.199 4.199 17 N -0.577 5.577 18 Si 0.785 3.215 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.207 1.207 22 C -0.071 4.071 23 C -0.069 4.069 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.076 0.924 37 H -0.002 1.002 38 H 0.006 0.994 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.381 -6.072 -12.394 19.223 hybrid contribution 0.683 0.320 1.234 1.446 sum -12.698 -5.752 -11.161 17.857 Atomic orbital electron populations 1.22399 0.85951 1.02833 1.01029 1.62223 1.08986 1.13802 1.42608 1.22152 0.93982 0.89498 1.01041 1.22181 0.94724 0.98326 0.92087 1.62336 1.06983 1.14573 1.42908 1.22306 0.86449 0.98552 0.94617 0.92334 1.22892 1.01089 0.96676 0.97688 1.22624 1.01244 0.96279 0.95250 1.22250 0.98768 0.96912 0.96311 1.21692 0.96901 0.95396 0.94589 0.92458 1.19015 0.93037 0.93567 0.93961 1.21651 1.29732 1.00820 1.04190 0.92361 1.25936 0.96415 0.95430 1.02097 1.70112 1.36980 1.12773 1.37833 0.85474 0.77976 0.78924 0.79143 1.18549 1.20434 1.20673 1.22261 0.94090 0.89647 1.01152 1.22190 0.94341 0.98990 0.91419 0.90199 0.90378 0.95953 0.95351 0.88537 0.90795 0.93496 0.90577 0.91709 0.90427 0.90698 0.93484 0.92435 1.00170 0.99387 0.93007 0.93006 0.90983 0.95544 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.65 16 2 N -0.55 -12.12 4.97 -921.95 -4.58 -16.70 16 3 C 0.06 1.40 5.62 86.31 0.49 1.89 16 4 C 0.05 1.44 5.35 86.31 0.46 1.90 16 5 N -0.54 -17.17 4.66 -866.26 -4.03 -21.20 16 6 C 0.09 3.17 2.76 45.64 0.13 3.29 16 7 H 0.06 2.33 7.64 -2.39 -0.02 2.31 16 8 C -0.14 -4.20 5.64 31.67 0.18 -4.02 16 9 C -0.12 -3.29 6.33 31.91 0.20 -3.08 16 10 C -0.10 -3.86 5.88 31.69 0.19 -3.68 16 11 C -0.07 -2.81 2.03 -10.07 -0.02 -2.83 16 12 H 0.06 2.51 6.48 -2.39 -0.02 2.49 16 13 C 0.04 2.25 4.10 29.85 0.12 2.37 16 14 C -0.53 -30.38 8.67 25.60 0.22 -30.16 16 15 H 0.06 3.25 7.70 -2.91 -0.02 3.22 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 17 N -0.94 -58.34 13.29 21.45 0.28 -58.06 16 18 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 C 0.06 1.55 3.83 86.31 0.33 1.88 16 23 C 0.06 1.41 5.62 86.31 0.49 1.89 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.12 8.13 -2.39 -0.02 1.10 16 26 H 0.02 0.38 8.14 -2.39 -0.02 0.37 16 27 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 30 H 0.05 1.18 6.49 -2.39 -0.02 1.16 16 31 H 0.08 1.97 5.61 -2.39 -0.01 1.96 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.98 5.85 -2.39 -0.01 1.96 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.92 7.77 -2.39 -0.02 1.90 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H -0.02 -1.22 8.14 -2.39 -0.02 -1.23 16 38 H -0.01 -0.72 8.02 -2.38 -0.02 -0.74 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 40 H 0.05 1.35 5.57 -2.39 -0.01 1.34 16 41 H 0.07 2.16 6.13 -2.39 -0.01 2.15 16 42 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 1.87 8.13 -2.39 -0.02 1.85 16 Total: -1.00 -65.43 317.89 -0.88 -66.31 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.95 Total: 10.93 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.47 Total: -28.55 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -8.33 Total: -95.96 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.43 -0.88 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.251 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds