Wall clock time and date at job start Mon Mar 30 2020 04:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.00263 * 2 1 4 4 C 1.53051 * 109.38423 * 183.17647 * 3 2 1 5 5 N 1.46961 * 109.36108 * 301.62826 * 4 3 2 6 6 C 1.46898 * 110.99843 * 183.16633 * 5 4 3 7 7 H 1.09005 * 110.01805 * 274.15417 * 6 5 4 8 8 C 1.54264 * 110.03302 * 35.54928 * 6 5 4 9 9 C 1.54883 * 104.19763 * 142.89370 * 8 6 5 10 10 C 1.54883 * 102.74779 * 322.05900 * 9 8 6 11 11 C 1.53873 * 110.02995 * 152.71544 * 6 5 4 12 12 H 1.09001 * 110.03502 * 121.43258 * 11 6 5 13 13 C 1.52994 * 110.03650 * 0.02562 * 11 6 5 14 14 C 1.50700 * 109.47273 * 176.93509 * 13 11 6 15 15 H 1.07995 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99702 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99654 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47378 * 59.99744 * 18 16 14 20 20 H 1.48493 * 109.47172 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47117 * 300.00106 * 18 16 14 22 22 C 1.46961 * 110.89761 * 59.28625 * 5 4 3 23 23 C 1.46958 * 110.99403 * 123.79629 * 2 1 3 24 24 H 1.09005 * 109.46553 * 59.99909 * 1 2 3 25 25 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47340 * 300.00813 * 1 2 3 27 27 H 1.09000 * 109.48695 * 303.15266 * 3 2 1 28 28 H 1.08999 * 109.48876 * 63.19413 * 3 2 1 29 29 H 1.08998 * 109.48720 * 61.56927 * 4 3 2 30 30 H 1.08998 * 109.49039 * 181.64190 * 4 3 2 31 31 H 1.09002 * 110.48295 * 261.57202 * 8 6 5 32 32 H 1.08998 * 110.48487 * 24.08218 * 8 6 5 33 33 H 1.09006 * 110.75566 * 80.37028 * 9 8 6 34 34 H 1.08998 * 110.75538 * 203.74334 * 9 8 6 35 35 H 1.09010 * 110.48835 * 156.61953 * 10 9 8 36 36 H 1.08996 * 110.48541 * 279.12570 * 10 9 8 37 37 H 1.09007 * 109.47001 * 296.93011 * 13 11 6 38 38 H 1.08996 * 109.47242 * 56.93024 * 13 11 6 39 39 H 0.97007 * 119.99671 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48861 * 180.72185 * 22 5 4 41 41 H 1.09004 * 109.50574 * 60.66836 * 22 5 4 42 42 H 1.09006 * 109.49173 * 296.77496 * 23 2 1 43 43 H 1.08997 * 109.49337 * 56.82629 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5659 1.0599 6 6 5.5191 0.5658 1.0600 7 1 5.8922 -0.2416 0.4298 8 6 6.0476 1.9221 0.5493 9 6 7.3027 2.1914 1.4159 10 6 6.8765 1.6634 2.8082 11 6 6.0460 0.4013 2.4963 12 1 6.6756 -0.4860 2.5637 13 6 4.8751 0.2887 3.4745 14 6 5.4039 0.0528 4.8659 15 1 6.4685 -0.0108 5.0354 16 6 4.5282 -0.0817 5.9225 17 7 3.2318 -0.0037 5.7161 18 14 5.1836 -0.3747 7.6470 19 1 6.0546 0.7603 8.0451 20 1 4.0471 -0.4839 8.5965 21 1 5.9702 -1.6341 7.6703 22 6 3.5234 -0.8061 1.0600 23 6 1.9955 -0.7632 1.1402 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6014 1.9128 -0.8603 28 1 1.6935 1.8775 0.9171 29 1 3.8257 0.8484 -1.0102 30 1 3.9176 2.3453 -0.0507 31 1 6.3189 1.8536 -0.5042 32 1 5.3025 2.7032 0.7004 33 1 8.1601 1.6346 1.0375 34 1 7.5216 3.2583 1.4578 35 1 7.7527 1.4060 3.4033 36 1 6.2682 2.4041 3.3272 37 1 4.2971 1.2127 3.4573 38 1 4.2365 -0.5449 3.1824 39 1 2.6158 -0.0987 6.4594 40 1 3.9176 -1.3470 1.9203 41 1 3.8253 -1.3119 0.1428 42 1 1.6937 -0.2819 2.0705 43 1 1.6009 -1.7788 1.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:06 Heat of formation + Delta-G solvation = 12.219362 kcal Electronic energy + Delta-G solvation = -20165.518019 eV Core-core repulsion = 17438.433586 eV Total energy + Delta-G solvation = -2727.084433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.50486 -37.31511 -33.97368 -32.93114 -30.98269 -29.63406 -28.61818 -26.02182 -25.49589 -23.30734 -23.19747 -21.88159 -19.94210 -19.38230 -18.14672 -16.53388 -15.74023 -15.02891 -14.78411 -14.56163 -14.50791 -14.29418 -14.12607 -13.59676 -13.21957 -12.58538 -12.34277 -11.90891 -11.81122 -11.70463 -11.34707 -11.18250 -11.02403 -10.84561 -10.77856 -10.50130 -10.45970 -10.40769 -10.19031 -9.96039 -9.85772 -9.44554 -8.93193 -8.69661 -8.15253 -8.10792 -7.55629 -5.84597 -3.84306 3.39268 3.43808 3.46402 4.20824 4.38263 4.57014 5.11300 5.21491 5.24557 5.30986 5.46626 5.50299 5.55630 5.61996 5.69723 5.78371 5.85724 5.89230 5.95608 5.96285 6.02336 6.13173 6.21521 6.23543 6.27540 6.32348 6.38997 6.46679 6.54321 6.62384 6.75101 6.93853 7.16090 7.23594 7.27618 7.37006 7.70181 7.80687 7.93584 8.17358 8.32471 8.65031 9.25224 9.77259 11.25631 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.007997 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.926636 B = 3500.573303 C = 4784.044888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.057 3.943 4 C 0.052 3.948 5 N -0.513 5.513 6 C 0.084 3.916 7 H 0.033 0.967 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.101 4.101 11 C -0.079 4.079 12 H 0.051 0.949 13 C 0.045 3.955 14 C -0.516 4.516 15 H 0.048 0.952 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.882 3.118 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.057 3.943 23 C 0.057 3.943 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.026 0.974 39 H 0.256 0.744 40 H 0.100 0.900 41 H 0.026 0.974 42 H 0.055 0.945 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 2.160 -12.444 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.071 4.071 4 C -0.077 4.077 5 N -0.238 5.238 6 C -0.024 4.024 7 H 0.051 0.949 8 C -0.161 4.161 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.098 4.098 12 H 0.069 0.931 13 C 0.008 3.992 14 C -0.555 4.555 15 H 0.067 0.933 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.710 3.290 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.070 4.070 23 C -0.070 4.070 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.734 2.141 -12.353 12.558 hybrid contribution 0.262 -0.225 1.053 1.108 sum -0.472 1.916 -11.300 11.471 Atomic orbital electron populations 1.22307 0.87937 1.01691 1.00299 1.62239 1.07295 1.14062 1.43669 1.22146 0.95064 0.89351 1.00528 1.22265 0.93893 0.99245 0.92259 1.62245 1.07262 1.13608 1.40648 1.22412 0.86378 0.95624 0.97964 0.94932 1.22628 0.97827 0.97752 0.97898 1.22508 0.96783 0.99887 0.97308 1.22260 0.99007 0.98068 0.94549 1.21875 0.98674 0.96211 0.93038 0.93076 1.19101 0.91473 0.98169 0.90411 1.21411 0.92540 1.48074 0.93470 0.93346 1.24955 0.94895 0.95985 0.98446 1.69969 1.01215 1.51083 1.31056 0.86831 0.78284 0.78607 0.85234 1.20505 1.21544 1.20537 1.22358 0.93958 0.89868 1.00861 1.22156 0.95013 0.97761 0.92119 0.91936 0.91707 0.95551 0.91224 0.93769 0.95174 0.90018 0.92935 0.90520 0.92475 0.92429 0.92807 0.91303 0.95626 0.95627 0.93405 0.88254 0.95618 0.92702 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.60 60.07 0.58 0.91 16 2 N -0.55 -8.31 4.97 -242.75 -1.21 -9.52 16 3 C 0.06 0.85 5.62 -3.77 -0.02 0.83 16 4 C 0.05 0.79 4.96 -3.76 -0.02 0.77 16 5 N -0.51 -9.27 3.26 -225.14 -0.73 -10.00 16 6 C 0.08 1.49 2.85 -66.60 -0.19 1.30 16 7 H 0.03 0.57 7.92 -51.93 -0.41 0.15 16 8 C -0.12 -1.86 5.21 -25.08 -0.13 -1.99 16 9 C -0.13 -1.92 6.91 -24.74 -0.17 -2.09 16 10 C -0.10 -1.91 5.80 -25.08 -0.15 -2.06 16 11 C -0.08 -1.63 2.83 -89.51 -0.25 -1.88 16 12 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 13 C 0.05 1.15 3.28 -27.89 -0.09 1.05 16 14 C -0.52 -14.47 8.65 -34.44 -0.30 -14.77 16 15 H 0.05 1.34 7.66 -52.49 -0.40 0.93 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 18 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.06 1.03 4.75 -3.76 -0.02 1.01 16 23 C 0.06 0.98 5.62 -3.77 -0.02 0.96 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.17 5.58 -51.93 -0.29 0.88 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.18 6.06 -51.93 -0.31 0.86 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.07 1.43 7.80 -51.93 -0.41 1.03 16 37 H 0.03 0.72 7.85 -51.93 -0.41 0.31 16 38 H 0.03 0.68 4.65 -51.93 -0.24 0.44 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.10 2.01 5.62 -51.93 -0.29 1.72 16 41 H 0.03 0.44 8.13 -51.93 -0.42 0.02 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -29.51 319.31 -10.11 -39.62 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.82 Total: -1.39 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.88 Total: -14.42 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -1.20 Total: -45.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.51 -10.11 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.837 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds