Wall clock time and date at job start Mon Mar 30 2020 04:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.00263 * 2 1 4 4 C 1.53051 * 109.38423 * 183.17647 * 3 2 1 5 5 N 1.46961 * 109.36108 * 301.62826 * 4 3 2 6 6 C 1.46898 * 110.99843 * 183.16633 * 5 4 3 7 7 H 1.09005 * 110.01805 * 274.15417 * 6 5 4 8 8 C 1.54264 * 110.03302 * 35.54928 * 6 5 4 9 9 C 1.54883 * 104.19763 * 142.89370 * 8 6 5 10 10 C 1.54883 * 102.74779 * 322.05900 * 9 8 6 11 11 C 1.53873 * 110.02995 * 152.71544 * 6 5 4 12 12 H 1.09001 * 110.03502 * 121.43258 * 11 6 5 13 13 C 1.52994 * 110.03650 * 0.02562 * 11 6 5 14 14 C 1.50700 * 109.47273 * 176.93509 * 13 11 6 15 15 H 1.07995 * 119.99823 * 359.97438 * 14 13 11 16 16 C 1.37881 * 119.99702 * 179.97438 * 14 13 11 17 17 N 1.31510 * 120.00096 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99654 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47378 * 59.99744 * 18 16 14 20 20 H 1.48493 * 109.47172 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47117 * 300.00106 * 18 16 14 22 22 C 1.46961 * 110.89761 * 59.28625 * 5 4 3 23 23 C 1.46958 * 110.99403 * 123.79629 * 2 1 3 24 24 H 1.09005 * 109.46553 * 59.99909 * 1 2 3 25 25 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47340 * 300.00813 * 1 2 3 27 27 H 1.09000 * 109.48695 * 303.15266 * 3 2 1 28 28 H 1.08999 * 109.48876 * 63.19413 * 3 2 1 29 29 H 1.08998 * 109.48720 * 61.56927 * 4 3 2 30 30 H 1.08998 * 109.49039 * 181.64190 * 4 3 2 31 31 H 1.09002 * 110.48295 * 261.57202 * 8 6 5 32 32 H 1.08998 * 110.48487 * 24.08218 * 8 6 5 33 33 H 1.09006 * 110.75566 * 80.37028 * 9 8 6 34 34 H 1.08998 * 110.75538 * 203.74334 * 9 8 6 35 35 H 1.09010 * 110.48835 * 156.61953 * 10 9 8 36 36 H 1.08996 * 110.48541 * 279.12570 * 10 9 8 37 37 H 1.09007 * 109.47001 * 296.93011 * 13 11 6 38 38 H 1.08996 * 109.47242 * 56.93024 * 13 11 6 39 39 H 0.97007 * 119.99671 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.48861 * 180.72185 * 22 5 4 41 41 H 1.09004 * 109.50574 * 60.66836 * 22 5 4 42 42 H 1.09006 * 109.49173 * 296.77496 * 23 2 1 43 43 H 1.08997 * 109.49337 * 56.82629 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5659 1.0599 6 6 5.5191 0.5658 1.0600 7 1 5.8922 -0.2416 0.4298 8 6 6.0476 1.9221 0.5493 9 6 7.3027 2.1914 1.4159 10 6 6.8765 1.6634 2.8082 11 6 6.0460 0.4013 2.4963 12 1 6.6756 -0.4860 2.5637 13 6 4.8751 0.2887 3.4745 14 6 5.4039 0.0528 4.8659 15 1 6.4685 -0.0108 5.0354 16 6 4.5282 -0.0817 5.9225 17 7 3.2318 -0.0037 5.7161 18 14 5.1836 -0.3747 7.6470 19 1 6.0546 0.7603 8.0451 20 1 4.0471 -0.4839 8.5965 21 1 5.9702 -1.6341 7.6703 22 6 3.5234 -0.8061 1.0600 23 6 1.9955 -0.7632 1.1402 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6014 1.9128 -0.8603 28 1 1.6935 1.8775 0.9171 29 1 3.8257 0.8484 -1.0102 30 1 3.9176 2.3453 -0.0507 31 1 6.3189 1.8536 -0.5042 32 1 5.3025 2.7032 0.7004 33 1 8.1601 1.6346 1.0375 34 1 7.5216 3.2583 1.4578 35 1 7.7527 1.4060 3.4033 36 1 6.2682 2.4041 3.3272 37 1 4.2971 1.2127 3.4573 38 1 4.2365 -0.5449 3.1824 39 1 2.6158 -0.0987 6.4594 40 1 3.9176 -1.3470 1.9203 41 1 3.8253 -1.3119 0.1428 42 1 1.6937 -0.2819 2.0705 43 1 1.6009 -1.7788 1.1114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:05 Heat of formation + Delta-G solvation = -6.366785 kcal Electronic energy + Delta-G solvation = -20166.323975 eV Core-core repulsion = 17438.433586 eV Total energy + Delta-G solvation = -2727.890389 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.88590 -38.66832 -35.39783 -34.91730 -32.54564 -31.24680 -29.89615 -27.68152 -27.02153 -24.67249 -24.60570 -23.65583 -21.27272 -20.74840 -19.67678 -18.52422 -17.26549 -16.52195 -16.40949 -16.02993 -15.87012 -15.71772 -15.53036 -14.95352 -14.53363 -14.30250 -13.88952 -13.52879 -13.26677 -13.04046 -12.91688 -12.79829 -12.60399 -12.45251 -12.27277 -12.13376 -11.97831 -11.77448 -11.60807 -11.52531 -11.22276 -11.21151 -10.80850 -10.71052 -10.31636 -9.38965 -8.93553 -8.07146 -6.14573 1.38884 1.40899 1.48250 2.45529 2.99085 3.05531 3.24550 3.78788 3.88614 3.99401 4.15454 4.18239 4.24028 4.38684 4.44558 4.52798 4.60710 4.63013 4.67563 4.73870 4.77422 4.82570 4.90722 4.94051 4.94869 4.97614 5.06928 5.10596 5.17155 5.20093 5.30550 5.39936 5.55057 5.62816 5.72193 5.98080 6.04982 6.11094 6.15885 6.34865 6.42069 6.51162 7.06813 7.51253 9.02610 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.007997 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.926636 B = 3500.573303 C = 4784.044888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.057 3.943 4 C 0.054 3.946 5 N -0.539 5.539 6 C 0.087 3.913 7 H 0.041 0.959 8 C -0.115 4.115 9 C -0.114 4.114 10 C -0.102 4.102 11 C -0.081 4.081 12 H 0.042 0.958 13 C 0.063 3.937 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.002 3.998 17 N -0.927 5.927 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.064 3.936 23 C 0.066 3.934 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.014 0.986 27 H 0.102 0.898 28 H 0.018 0.982 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.040 0.960 37 H -0.012 1.012 38 H 0.007 0.993 39 H 0.257 0.743 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.012 0.988 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 2.662 -14.232 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.264 5.264 6 C -0.021 4.021 7 H 0.059 0.941 8 C -0.153 4.153 9 C -0.152 4.152 10 C -0.140 4.140 11 C -0.100 4.100 12 H 0.061 0.939 13 C 0.026 3.974 14 C -0.572 4.572 15 H 0.067 0.933 16 C -0.195 4.195 17 N -0.568 5.568 18 Si 0.775 3.225 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.064 4.064 23 C -0.063 4.063 24 H 0.106 0.894 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.120 0.880 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.006 0.994 38 H 0.025 0.975 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.248 2.649 -14.152 14.400 hybrid contribution -0.086 -0.396 1.623 1.673 sum 0.162 2.253 -12.529 12.731 Atomic orbital electron populations 1.22408 0.86265 1.02666 1.00934 1.62306 1.08828 1.14077 1.41811 1.22223 0.95091 0.89163 1.00613 1.22326 0.94020 0.99504 0.91469 1.62146 1.07719 1.13751 1.42780 1.22352 0.86298 0.97739 0.95753 0.94112 1.22602 0.97456 0.95665 0.99534 1.22454 0.97355 1.01233 0.94114 1.22179 0.98082 0.96597 0.97124 1.21799 0.97050 0.96881 0.94282 0.93906 1.18817 0.92491 0.95321 0.90795 1.21839 0.92626 1.47662 0.95079 0.93329 1.25803 0.95119 0.95814 1.02750 1.70121 1.02456 1.52057 1.32198 0.85756 0.77788 0.78887 0.80100 1.19666 1.21185 1.19563 1.22165 0.94335 0.90023 0.99833 1.22005 0.94756 0.98375 0.91141 0.89396 0.90682 0.96700 0.88021 0.96376 0.93948 0.88720 0.89778 0.90863 0.90543 0.90408 0.93088 0.94065 0.99376 0.97459 0.93468 0.91593 0.94256 0.96937 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.60 127.69 1.23 1.83 16 2 N -0.55 -16.06 4.97 -921.93 -4.58 -20.64 16 3 C 0.06 1.63 5.62 86.31 0.49 2.11 16 4 C 0.05 1.57 4.96 86.31 0.43 2.00 16 5 N -0.54 -19.59 3.26 -866.22 -2.82 -22.41 16 6 C 0.09 2.99 2.85 45.64 0.13 3.12 16 7 H 0.04 1.34 7.92 -2.38 -0.02 1.32 16 8 C -0.12 -3.15 5.21 31.67 0.17 -2.99 16 9 C -0.11 -3.13 6.91 31.88 0.22 -2.91 16 10 C -0.10 -3.85 5.80 31.67 0.18 -3.67 16 11 C -0.08 -3.41 2.83 -10.07 -0.03 -3.44 16 12 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 13 C 0.06 3.34 3.28 29.85 0.10 3.44 16 14 C -0.53 -30.97 8.65 25.60 0.22 -30.75 16 15 H 0.05 2.75 7.66 -2.91 -0.02 2.72 16 16 C 0.00 0.14 5.46 84.66 0.46 0.60 16 17 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 18 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 C 0.06 2.38 4.75 86.31 0.41 2.79 16 23 C 0.07 2.31 5.62 86.31 0.49 2.79 16 24 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.07 1.64 8.13 -2.39 -0.02 1.63 16 26 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 29 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.09 2.48 5.58 -2.39 -0.01 2.47 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.07 6.06 -2.39 -0.01 2.06 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.04 1.76 7.80 -2.39 -0.02 1.74 16 37 H -0.01 -0.73 7.85 -2.38 -0.02 -0.75 16 38 H 0.01 0.42 4.65 -2.39 -0.01 0.40 16 39 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 40 H 0.07 2.84 5.62 -2.39 -0.01 2.83 16 41 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 42 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.08 2.67 8.13 -2.39 -0.02 2.65 16 Total: -1.00 -66.27 319.31 0.35 -65.93 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.95 Total: 11.78 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.49 Total: -25.07 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -7.11 Total: -100.43 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.27 0.35 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.562 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds