Wall clock time and date at job start Mon Mar 30 2020 04:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47896 * 111.00144 * 2 1 4 4 C 1.53997 * 107.06035 * 145.84579 * 3 2 1 5 5 C 1.54596 * 105.13478 * 358.77042 * 4 3 2 6 6 H 1.09006 * 110.72088 * 96.58737 * 5 4 3 7 7 N 1.46899 * 110.72156 * 219.68430 * 5 4 3 8 8 C 1.48002 * 111.00042 * 71.71322 * 7 5 4 9 9 C 1.50444 * 112.74627 * 84.77537 * 8 7 5 10 10 C 1.54313 * 108.48926 * 93.78805 * 9 8 7 11 11 C 1.45888 * 112.18641 * 281.46881 * 10 9 8 12 12 C 1.54313 * 112.18748 * 61.12286 * 11 10 9 13 13 C 1.47927 * 111.05847 * 200.53783 * 7 5 4 14 14 H 1.09001 * 108.63195 * 312.21021 * 13 7 5 15 15 C 1.50694 * 108.85521 * 70.51762 * 13 7 5 16 16 H 1.07996 * 119.99847 * 3.38579 * 15 13 7 17 17 C 1.37876 * 120.00245 * 183.39043 * 15 13 7 18 18 N 1.31517 * 119.99977 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00206 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47092 * 90.00080 * 19 17 15 21 21 H 1.48498 * 109.47167 * 209.99491 * 19 17 15 22 22 H 1.48495 * 109.47168 * 330.00200 * 19 17 15 23 23 C 1.48731 * 111.04267 * 117.57479 * 2 1 3 24 24 H 1.08996 * 109.46927 * 60.13103 * 1 2 3 25 25 H 1.08997 * 109.47161 * 180.12674 * 1 2 3 26 26 H 1.08998 * 109.46924 * 300.12884 * 1 2 3 27 27 H 1.08999 * 109.92139 * 26.48523 * 3 2 1 28 28 H 1.09008 * 110.07821 * 265.28418 * 3 2 1 29 29 H 1.09000 * 110.30350 * 239.86094 * 4 3 2 30 30 H 1.08994 * 110.39371 * 117.73108 * 4 3 2 31 31 H 1.09003 * 108.80923 * 323.97038 * 8 7 5 32 32 H 1.08992 * 108.81180 * 205.59094 * 8 7 5 33 33 H 1.08993 * 109.63532 * 213.48913 * 9 8 7 34 34 H 1.09003 * 109.63006 * 333.89124 * 9 8 7 35 35 H 1.09000 * 108.93866 * 42.16605 * 10 9 8 36 36 H 1.08999 * 108.93889 * 160.77040 * 10 9 8 37 37 H 1.09000 * 108.93740 * 181.81641 * 11 10 9 38 38 H 1.09000 * 108.93481 * 300.51507 * 11 10 9 39 39 H 1.09001 * 109.63444 * 41.16359 * 12 11 10 40 40 H 1.08994 * 109.63111 * 161.56051 * 12 11 10 41 41 H 0.97001 * 120.00344 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.83575 * 81.96108 * 23 2 1 43 43 H 1.09003 * 110.58327 * 318.77130 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2984 1.3659 0.8265 5 6 3.4491 -0.0930 1.3154 6 1 4.1140 -0.6533 0.6580 7 7 3.9385 -0.1292 2.7000 8 6 2.8880 0.3099 3.6456 9 6 1.9584 -0.8049 4.0410 10 6 2.4797 -1.4360 5.3491 11 6 3.5980 -2.3434 5.1155 12 6 4.8095 -1.6250 4.4851 13 6 4.5439 -1.4415 3.0156 14 1 3.8669 -2.2271 2.6800 15 6 5.8454 -1.5701 2.2670 16 1 6.2101 -0.7455 1.6725 17 6 6.5706 -2.7404 2.3408 18 7 6.1267 -3.7444 3.0650 19 14 8.1835 -2.9000 1.4122 20 1 9.3006 -2.4449 2.2785 21 1 8.3981 -4.3197 1.0331 22 1 8.1344 -2.0624 0.1870 23 6 2.0031 -0.6426 1.2304 24 1 -0.3633 0.5118 -0.8911 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3633 0.5158 0.8888 27 1 1.2759 2.0562 0.4570 28 1 2.2118 1.6999 -1.0204 29 1 3.2136 2.0429 1.6766 30 1 4.1479 1.6459 0.2038 31 1 2.3055 1.1046 3.1794 32 1 3.3651 0.7046 4.5425 33 1 0.9563 -0.4069 4.2003 34 1 1.9327 -1.5572 3.2527 35 1 2.8035 -0.6411 6.0209 36 1 1.6686 -1.9888 5.8230 37 1 3.9020 -2.7820 6.0659 38 1 3.2732 -3.1401 4.4463 39 1 4.9445 -0.6518 4.9571 40 1 5.7065 -2.2278 4.6258 41 1 6.6370 -4.5677 3.1173 42 1 2.0093 -1.7279 1.1296 43 1 1.4244 -0.3396 2.1031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:58 Heat of formation + Delta-G solvation = 18.649516 kcal Electronic energy + Delta-G solvation = -20622.635391 eV Core-core repulsion = 17895.829791 eV Total energy + Delta-G solvation = -2726.805600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65621 -37.30929 -33.70140 -33.25300 -30.65439 -30.43720 -27.88411 -26.18351 -25.49864 -24.30641 -22.75239 -20.86771 -20.01653 -19.31728 -18.41531 -16.50469 -16.02652 -15.32178 -14.80586 -14.45983 -14.20145 -13.95902 -13.50435 -13.14878 -12.85520 -12.57990 -12.40233 -12.23322 -11.76832 -11.51820 -11.31421 -11.28838 -11.02731 -10.96125 -10.81130 -10.68272 -10.52783 -10.17419 -10.05672 -9.84680 -9.61250 -9.55127 -9.41407 -8.81295 -8.25636 -8.13923 -7.02506 -5.94875 -3.99289 3.34750 3.41391 3.45349 4.25504 4.46254 4.89028 5.14130 5.16807 5.28775 5.34837 5.43917 5.49982 5.55085 5.58700 5.68956 5.82786 5.89768 5.91931 5.99081 6.10343 6.15076 6.22020 6.29232 6.33694 6.37685 6.56993 6.60648 6.62674 6.77542 6.79483 6.84053 6.96430 7.15731 7.26954 7.28994 7.36115 7.56150 7.79457 7.92669 8.30546 8.42569 8.66251 9.09744 9.64951 11.10248 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.008788 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.150176 B = 3185.416820 C = 4120.196202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.038 3.962 4 C -0.125 4.125 5 C 0.099 3.901 6 H 0.101 0.899 7 N -0.535 5.535 8 C 0.062 3.938 9 C -0.152 4.152 10 C -0.108 4.108 11 C -0.118 4.118 12 C -0.094 4.094 13 C 0.226 3.774 14 H 0.003 0.997 15 C -0.500 4.500 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.282 1.282 21 H -0.289 1.289 22 H -0.275 1.275 23 C -0.005 4.005 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.036 0.964 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.092 0.908 41 H 0.259 0.741 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.358 6.953 -0.571 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.091 4.091 4 C -0.163 4.163 5 C -0.011 4.011 6 H 0.120 0.880 7 N -0.259 5.259 8 C -0.067 4.067 9 C -0.191 4.191 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.133 4.133 13 C 0.121 3.879 14 H 0.021 0.979 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.530 5.530 19 Si 0.721 3.279 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.200 1.200 23 C -0.134 4.134 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.774 6.792 -0.931 11.135 hybrid contribution -0.205 -0.388 0.223 0.493 sum -8.978 6.404 -0.708 11.051 Atomic orbital electron populations 1.22465 0.88832 1.01694 0.99993 1.64630 1.07163 1.14844 1.38152 1.22848 0.96268 0.89666 1.00280 1.22491 0.96344 0.98439 0.99050 1.22457 0.92566 0.94153 0.91946 0.88048 1.61920 1.29821 1.34545 0.99586 1.21783 0.92176 0.95905 0.96794 1.22213 0.98259 1.00016 0.98635 1.20564 0.98118 0.99148 0.96691 1.20539 0.96366 0.98587 1.00028 1.21390 0.97946 0.97848 0.96076 1.18923 0.93596 0.82508 0.92909 0.97925 1.21242 1.05172 0.99098 1.28332 0.92114 1.24908 0.97881 0.95839 0.95768 1.69970 1.38629 1.04289 1.40103 0.86585 0.84074 0.76990 0.80279 1.20843 1.21490 1.19952 1.24442 0.98284 0.99994 0.90633 0.91871 0.91657 0.95962 0.94593 0.90933 0.91311 0.91151 0.93202 0.91816 0.93164 0.90893 0.93092 0.93991 0.94143 0.92480 0.94790 0.88984 0.93151 0.90514 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.40 60.07 0.56 0.81 16 2 N -0.52 -8.21 5.55 -238.54 -1.32 -9.53 16 3 C 0.04 0.54 6.70 -2.76 -0.02 0.52 16 4 C -0.12 -2.00 6.26 -25.37 -0.16 -2.16 16 5 C 0.10 1.90 2.87 -65.86 -0.19 1.71 16 6 H 0.10 2.26 7.08 -51.93 -0.37 1.89 16 7 N -0.54 -11.04 4.32 -219.22 -0.95 -11.98 16 8 C 0.06 1.08 4.40 -4.49 -0.02 1.06 16 9 C -0.15 -2.55 3.93 -27.32 -0.11 -2.65 16 10 C -0.11 -1.84 5.30 -29.41 -0.16 -1.99 16 11 C -0.12 -2.39 5.30 -29.41 -0.16 -2.54 16 12 C -0.09 -2.19 4.72 -27.31 -0.13 -2.32 16 13 C 0.23 5.41 1.19 -69.57 -0.08 5.33 16 14 H 0.00 0.08 6.35 -51.93 -0.33 -0.25 16 15 C -0.50 -13.39 7.61 -34.44 -0.26 -13.65 16 16 H 0.06 1.66 7.77 -52.49 -0.41 1.25 16 17 C 0.06 1.54 5.02 -17.82 -0.09 1.45 16 18 N -0.89 -24.78 11.60 55.43 0.64 -24.14 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.00 -0.08 4.20 -1.79 -0.01 -0.09 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.02 0.27 8.01 -51.93 -0.42 -0.14 16 27 H 0.04 0.47 7.73 -51.93 -0.40 0.07 16 28 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.07 1.08 6.83 -51.93 -0.35 0.72 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.81 6.00 -51.93 -0.31 0.49 16 32 H 0.06 1.14 6.58 -51.93 -0.34 0.80 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.35 4.80 -51.93 -0.25 1.10 16 35 H 0.05 0.83 7.52 -51.93 -0.39 0.44 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.27 7.51 -51.93 -0.39 0.88 16 39 H 0.03 0.76 7.08 -51.93 -0.37 0.39 16 40 H 0.09 2.43 5.91 -51.93 -0.31 2.12 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.08 1.47 7.98 -51.93 -0.41 1.05 16 43 H 0.06 0.99 4.10 -51.93 -0.21 0.78 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -27.01 305.75 -10.21 -37.22 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.36 Total: 2.08 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.81 Total: -14.51 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -1.63 Total: -45.65 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.01 -10.21 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.866 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds