Wall clock time and date at job start Mon Mar 30 2020 04:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.48557 * 111.00341 * 2 1 4 4 C 1.54373 * 104.59517 * 200.95963 * 3 2 1 5 5 C 1.54262 * 105.06084 * 23.85240 * 4 3 2 6 6 H 1.09004 * 110.32577 * 241.00044 * 5 4 3 7 7 N 1.46909 * 110.32447 * 118.89651 * 5 4 3 8 8 C 1.39784 * 110.99669 * 300.21452 * 7 5 4 9 9 C 1.54432 * 111.76925 * 189.12981 * 8 7 5 10 10 C 1.50755 * 109.02336 * 282.59711 * 9 8 7 11 11 C 1.54169 * 112.61196 * 93.01496 * 10 9 8 12 12 C 1.53819 * 111.97088 * 318.48825 * 11 10 9 13 13 C 1.47629 * 110.99805 * 69.11032 * 7 5 4 14 14 H 1.09000 * 109.75042 * 270.03076 * 13 7 5 15 15 C 1.50702 * 109.74843 * 30.71338 * 13 7 5 16 16 H 1.07990 * 120.00111 * 5.80566 * 15 13 7 17 17 C 1.37880 * 119.99664 * 185.81734 * 15 13 7 18 18 N 1.31507 * 120.00099 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99596 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47354 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47170 * 239.99290 * 19 17 15 22 22 H 1.48503 * 109.47235 * 119.99601 * 19 17 15 23 23 C 1.48563 * 110.99823 * 244.58011 * 2 1 3 24 24 H 1.08995 * 109.46528 * 60.12464 * 1 2 3 25 25 H 1.09000 * 109.46832 * 180.12511 * 1 2 3 26 26 H 1.09001 * 109.46700 * 300.12590 * 1 2 3 27 27 H 1.08996 * 110.41231 * 82.17957 * 3 2 1 28 28 H 1.08998 * 110.50833 * 319.78910 * 3 2 1 29 29 H 1.08997 * 110.32756 * 264.95428 * 4 3 2 30 30 H 1.09005 * 110.32642 * 142.74828 * 4 3 2 31 31 H 1.08995 * 109.01869 * 309.72072 * 8 7 5 32 32 H 1.08999 * 109.01753 * 68.54043 * 8 7 5 33 33 H 1.08996 * 109.54558 * 42.45520 * 9 8 7 34 34 H 1.08992 * 109.54519 * 162.64233 * 9 8 7 35 35 H 1.08999 * 108.85659 * 213.82207 * 10 9 8 36 36 H 1.08998 * 108.85672 * 332.31389 * 10 9 8 37 37 H 1.08997 * 108.97655 * 79.12466 * 11 10 9 38 38 H 1.08991 * 108.98545 * 197.84207 * 11 10 9 39 39 H 1.09002 * 109.05155 * 198.48856 * 12 11 10 40 40 H 1.08994 * 109.05481 * 79.59043 * 12 11 10 41 41 H 0.96995 * 120.00324 * 0.02562 * 18 17 15 42 42 H 1.08994 * 110.41517 * 40.26366 * 23 2 1 43 43 H 1.09008 * 110.41395 * 277.81969 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0015 1.3869 0.0000 4 6 3.4433 1.2500 -0.5344 5 6 3.4433 -0.0541 -1.3585 6 1 4.1496 -0.7688 -0.9362 7 7 3.7808 0.2281 -2.7602 8 6 2.8584 1.1107 -3.3296 9 6 3.0598 1.2442 -4.8549 10 6 4.2422 2.1417 -5.1177 11 6 5.5585 1.3558 -5.2800 12 6 5.6774 0.2146 -4.2555 13 6 5.1926 0.6391 -2.8919 14 1 5.2718 1.7217 -2.7927 15 6 6.0199 -0.0318 -1.8258 16 1 5.5701 -0.7690 -1.1774 17 6 7.3510 0.2959 -1.6781 18 7 7.8988 1.1935 -2.4679 19 14 8.3762 -0.5351 -0.3561 20 1 7.5307 -1.4987 0.3934 21 1 8.9044 0.4908 0.5786 22 1 9.5087 -1.2578 -0.9892 23 6 2.0014 -0.5954 -1.2527 24 1 -0.3632 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0022 26 1 -0.3633 0.5158 0.8889 27 1 2.0080 1.7916 1.0120 28 1 1.4106 2.0228 -0.6591 29 1 4.1484 1.1747 0.2934 30 1 3.6938 2.0994 -1.1699 31 1 1.8502 0.7451 -3.1350 32 1 2.9743 2.0916 -2.8687 33 1 3.2460 0.2604 -5.2856 34 1 2.1656 1.6758 -5.3043 35 1 4.0570 2.7106 -6.0289 36 1 4.3490 2.8366 -4.2848 37 1 5.5989 0.9356 -6.2849 38 1 6.3977 2.0387 -5.1489 39 1 6.7212 -0.0909 -4.1827 40 1 5.0830 -0.6331 -4.5964 41 1 7.3663 1.6253 -3.1541 42 1 1.4100 -0.2713 -2.1089 43 1 2.0079 -1.6832 -1.1838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:01 Heat of formation + Delta-G solvation = 21.283951 kcal Electronic energy + Delta-G solvation = -20689.425875 eV Core-core repulsion = 17962.734512 eV Total energy + Delta-G solvation = -2726.691363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.86850 -37.37845 -33.87084 -33.52947 -30.51423 -30.16657 -28.19812 -25.91109 -25.59959 -24.00884 -22.75577 -21.09347 -20.75115 -18.92000 -18.65316 -16.65040 -15.95755 -15.52871 -14.86173 -14.47997 -14.29439 -13.91397 -13.65638 -13.58536 -12.96734 -12.84602 -12.21879 -12.06132 -11.76647 -11.53879 -11.46031 -11.25316 -11.07964 -10.88206 -10.73399 -10.70506 -10.53112 -10.12412 -9.98803 -9.94240 -9.69668 -9.57433 -9.49689 -8.38508 -8.26758 -8.16505 -7.11469 -6.31044 -4.05537 3.45675 3.47914 3.61552 4.24985 4.52779 4.88576 5.12276 5.18658 5.37279 5.39565 5.41738 5.46756 5.56254 5.59192 5.66595 5.76674 5.88371 5.94767 5.97622 6.02203 6.04634 6.18732 6.26706 6.31399 6.39371 6.47967 6.56634 6.57896 6.64525 6.78912 6.82921 6.85375 7.03459 7.09380 7.21261 7.25941 7.32371 7.66117 7.96371 8.16486 8.52525 8.71283 8.93403 9.66561 11.05482 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.009954 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.134920 B = 2812.276629 C = 4094.629498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.516 5.516 3 C 0.033 3.967 4 C -0.140 4.140 5 C 0.097 3.903 6 H 0.115 0.885 7 N -0.543 5.543 8 C 0.072 3.928 9 C -0.113 4.113 10 C -0.115 4.115 11 C -0.117 4.117 12 C -0.107 4.107 13 C 0.223 3.777 14 H 0.000 1.000 15 C -0.597 4.597 16 H 0.065 0.935 17 C 0.021 3.979 18 N -0.914 5.914 19 Si 1.069 2.931 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.026 3.974 24 H 0.023 0.977 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.274 0.726 42 H 0.050 0.950 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.303 0.049 -0.156 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.240 5.240 3 C -0.095 4.095 4 C -0.180 4.180 5 C -0.012 4.012 6 H 0.133 0.867 7 N -0.266 5.266 8 C -0.058 4.058 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.118 3.882 14 H 0.017 0.983 15 C -0.635 4.635 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.550 5.550 19 Si 0.898 3.102 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.215 1.215 23 C -0.102 4.102 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.026 0.974 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.661 -0.708 0.706 9.713 hybrid contribution -1.817 1.418 -1.051 2.533 sum -11.478 0.710 -0.345 11.505 Atomic orbital electron populations 1.22468 0.88942 1.01691 1.00192 1.65334 1.07233 1.15592 1.35825 1.23123 0.96484 0.89635 1.00297 1.22768 0.94525 0.99972 1.00710 1.22438 0.94189 0.96475 0.88058 0.86740 1.58977 1.04696 1.48044 1.14919 1.21003 0.96288 0.94284 0.94248 1.21423 0.96964 1.00611 0.96089 1.21352 0.95391 0.98258 1.00231 1.21967 0.96109 0.98622 0.98818 1.21593 1.01664 0.96165 0.95093 1.18937 0.81934 0.93918 0.93434 0.98263 1.22274 0.97064 1.26177 1.17991 0.91667 1.25678 0.95933 0.96329 1.00400 1.70707 1.40016 1.24955 1.19362 0.83539 0.75536 0.75718 0.75414 1.21393 1.21581 1.21482 1.23481 0.96618 0.99989 0.90080 0.95882 0.91568 0.91791 0.90926 0.94811 0.90868 0.91702 0.92539 0.97407 0.91072 0.92930 0.93660 0.92850 0.93940 0.92888 0.91457 0.93199 0.91475 0.93235 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.53 60.07 0.57 0.77 16 2 N -0.52 -8.05 5.66 -238.24 -1.35 -9.40 16 3 C 0.03 0.52 6.49 -2.19 -0.01 0.50 16 4 C -0.14 -2.64 5.49 -25.35 -0.14 -2.78 16 5 C 0.10 1.90 2.61 -66.33 -0.17 1.73 16 6 H 0.12 2.55 5.21 -51.93 -0.27 2.28 16 7 N -0.54 -11.13 3.94 -223.75 -0.88 -12.01 16 8 C 0.07 1.30 4.37 -6.74 -0.03 1.27 16 9 C -0.11 -1.89 5.65 -27.11 -0.15 -2.04 16 10 C -0.11 -2.02 5.32 -27.25 -0.14 -2.17 16 11 C -0.12 -2.31 5.84 -25.69 -0.15 -2.46 16 12 C -0.11 -2.42 4.09 -27.40 -0.11 -2.53 16 13 C 0.22 5.27 0.86 -69.56 -0.06 5.21 16 14 H 0.00 0.00 6.01 -51.93 -0.31 -0.32 16 15 C -0.60 -15.60 7.40 -34.44 -0.25 -15.85 16 16 H 0.07 1.72 5.07 -52.49 -0.27 1.45 16 17 C 0.02 0.58 5.06 -17.82 -0.09 0.49 16 18 N -0.91 -26.41 13.06 55.43 0.72 -25.68 16 19 Si 1.07 24.74 29.90 -169.99 -5.08 19.65 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 23 C 0.03 0.43 5.95 -2.18 -0.01 0.42 16 24 H 0.02 0.28 7.97 -51.93 -0.41 -0.14 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.51 7.97 -51.93 -0.41 0.10 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.06 1.32 5.84 -51.93 -0.30 1.02 16 31 H 0.06 0.95 5.25 -51.93 -0.27 0.68 16 32 H 0.01 0.16 5.83 -51.93 -0.30 -0.15 16 33 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 1.02 6.57 -51.93 -0.34 0.68 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.10 7.66 -51.93 -0.40 0.70 16 39 H 0.07 1.73 6.48 -51.93 -0.34 1.39 16 40 H 0.05 1.11 7.26 -51.93 -0.38 0.74 16 41 H 0.27 7.83 5.62 -40.82 -0.23 7.60 16 42 H 0.05 0.81 5.13 -51.93 -0.27 0.54 16 43 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 302.68 15.07 4.56 4.56 Total: -1.00 -27.42 302.68 -9.84 -37.26 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.05 Total: 3.06 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.76 Total: -17.44 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -1.51 Total: -47.09 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.42 -9.84 -37.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.544 kcal (2) G-P(sol) polarization free energy of solvation -27.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds