Wall clock time and date at job start Mon Mar 30 2020 04:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47898 * 110.99863 * 2 1 4 4 C 1.53992 * 107.05705 * 145.85123 * 3 2 1 5 5 C 1.54592 * 105.13979 * 358.77486 * 4 3 2 6 6 H 1.08992 * 110.72787 * 96.58160 * 5 4 3 7 7 N 1.46903 * 110.72551 * 219.68854 * 5 4 3 8 8 C 1.47634 * 110.99950 * 54.43916 * 7 5 4 9 9 C 1.50816 * 108.04207 * 150.32792 * 8 7 5 10 10 C 1.53821 * 111.61920 * 95.06155 * 9 8 7 11 11 C 1.54167 * 111.97120 * 319.04199 * 10 9 8 12 12 C 1.50635 * 112.56344 * 318.50953 * 11 10 9 13 13 C 1.39778 * 111.00008 * 285.54072 * 7 5 4 14 14 H 1.09004 * 109.02366 * 68.53932 * 13 7 5 15 15 C 1.50700 * 109.01907 * 309.64379 * 13 7 5 16 16 H 1.07995 * 120.00339 * 353.26910 * 15 13 7 17 17 C 1.37878 * 119.99820 * 173.26725 * 15 13 7 18 18 N 1.31521 * 120.00304 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00068 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47197 * 59.99780 * 19 17 15 21 21 H 1.48498 * 109.47466 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46717 * 299.99948 * 19 17 15 23 23 C 1.48530 * 111.00188 * 117.40178 * 2 1 3 24 24 H 1.08988 * 109.47638 * 60.12198 * 1 2 3 25 25 H 1.08997 * 109.46939 * 180.12880 * 1 2 3 26 26 H 1.09001 * 109.46641 * 300.12220 * 1 2 3 27 27 H 1.08992 * 109.92089 * 26.49498 * 3 2 1 28 28 H 1.09004 * 110.08270 * 265.29489 * 3 2 1 29 29 H 1.08999 * 110.30715 * 239.85997 * 4 3 2 30 30 H 1.09003 * 110.30945 * 117.69127 * 4 3 2 31 31 H 1.09002 * 109.74736 * 269.96181 * 8 7 5 32 32 H 1.08997 * 109.74976 * 30.63831 * 8 7 5 33 33 H 1.08999 * 109.04770 * 215.61410 * 9 8 7 34 34 H 1.09000 * 109.05466 * 334.58271 * 9 8 7 35 35 H 1.09000 * 108.97971 * 79.68919 * 10 9 8 36 36 H 1.09003 * 108.98051 * 198.39944 * 10 9 8 37 37 H 1.08996 * 108.85668 * 79.29568 * 11 10 9 38 38 H 1.09006 * 108.85568 * 197.78478 * 11 10 9 39 39 H 1.09001 * 109.58669 * 333.13789 * 12 11 10 40 40 H 1.08998 * 109.43107 * 212.91537 * 12 11 10 41 41 H 0.96999 * 119.99695 * 179.97438 * 18 17 15 42 42 H 1.08994 * 110.67016 * 81.84365 * 23 2 1 43 43 H 1.08998 * 110.66652 * 318.70508 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8264 5 6 3.4493 -0.0930 1.3151 6 1 4.1140 -0.6532 0.6578 7 7 3.9387 -0.1294 2.6997 8 6 3.0755 0.6747 3.5874 9 6 3.1250 0.0642 4.9655 10 6 4.1749 0.7537 5.8534 11 6 5.4710 1.0646 5.0787 12 6 5.8830 -0.0608 4.1662 13 6 5.2983 0.1898 2.7590 14 1 5.4279 1.2413 2.5025 15 6 6.0451 -0.6549 1.7592 16 1 5.5306 -1.4387 1.2232 17 6 7.3853 -0.4271 1.5287 18 7 8.0118 0.5277 2.1810 19 14 8.3109 -1.4738 0.2888 20 1 7.6860 -1.3239 -1.0500 21 1 9.7269 -1.0308 0.2260 22 1 8.2554 -2.8984 0.7043 23 6 2.0014 -0.6382 1.2310 24 1 -0.3634 0.5119 -0.8909 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3633 0.5157 0.8889 27 1 1.2759 2.0561 0.4571 28 1 2.2115 1.7001 -1.0203 29 1 3.2137 2.0428 1.6765 30 1 4.1470 1.6455 0.2021 31 1 3.4410 1.7009 3.6258 32 1 2.0512 0.6625 3.2149 33 1 2.1450 0.1608 5.4328 34 1 3.3742 -0.9933 4.8775 35 1 3.7585 1.6854 6.2364 36 1 4.4120 0.1013 6.6939 37 1 5.3177 1.9638 4.4821 38 1 6.2730 1.2491 5.7935 39 1 5.5030 -1.0052 4.5561 40 1 6.9707 -0.1004 4.1074 41 1 8.9547 0.6877 2.0191 42 1 2.0042 -1.7235 1.1314 43 1 1.4239 -0.3323 2.1034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:04 Heat of formation + Delta-G solvation = 17.647685 kcal Electronic energy + Delta-G solvation = -20506.277712 eV Core-core repulsion = 17779.428669 eV Total energy + Delta-G solvation = -2726.849043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.60246 -37.32604 -33.90910 -32.99028 -30.53925 -30.35093 -28.12999 -25.97648 -25.61406 -24.19917 -22.74281 -20.86625 -20.45514 -18.90936 -18.35004 -16.42286 -16.07687 -15.33772 -14.85372 -14.20851 -14.12482 -13.80061 -13.61930 -13.27720 -13.14936 -12.86939 -12.52270 -11.99224 -11.52620 -11.51123 -11.30780 -11.21857 -11.09694 -10.88799 -10.77713 -10.62641 -10.48246 -10.34866 -10.05139 -9.77526 -9.64737 -9.41297 -9.33313 -8.70222 -8.30398 -8.14988 -6.95848 -5.97111 -4.01580 3.35193 3.39335 3.42838 4.27427 4.44973 4.95185 5.17199 5.29204 5.33713 5.40334 5.47198 5.56419 5.60751 5.63142 5.69925 5.80156 5.91516 5.97066 6.01402 6.12667 6.16512 6.25252 6.33063 6.40816 6.42267 6.52925 6.64452 6.69870 6.76562 6.83573 6.91148 7.03838 7.19629 7.27059 7.30951 7.39229 7.65762 7.78670 7.90856 8.24815 8.50481 8.82947 9.11797 9.64525 11.09330 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.009710 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.334435 B = 2882.903174 C = 4200.111295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.524 5.524 3 C 0.041 3.959 4 C -0.159 4.159 5 C 0.099 3.901 6 H 0.115 0.885 7 N -0.531 5.531 8 C 0.059 3.941 9 C -0.111 4.111 10 C -0.114 4.114 11 C -0.114 4.114 12 C -0.100 4.100 13 C 0.230 3.770 14 H -0.007 1.007 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.035 3.965 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.022 0.978 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.259 0.741 42 H 0.080 0.920 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 1.218 1.199 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.088 4.088 4 C -0.199 4.199 5 C -0.010 4.010 6 H 0.133 0.867 7 N -0.254 5.254 8 C -0.068 4.068 9 C -0.149 4.149 10 C -0.152 4.152 11 C -0.152 4.152 12 C -0.139 4.139 13 C 0.122 3.878 14 H 0.010 0.990 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.093 4.093 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.854 0.585 0.929 10.910 hybrid contribution 0.371 0.902 -0.140 0.985 sum -10.484 1.487 0.789 10.618 Atomic orbital electron populations 1.22467 0.88741 1.01679 1.00084 1.64665 1.07189 1.15181 1.37742 1.22794 0.96189 0.89425 1.00357 1.23033 0.96807 1.00438 0.99641 1.22610 0.93895 0.93370 0.91131 0.86725 1.59025 1.04926 1.56024 1.05439 1.21781 0.96476 0.95182 0.93372 1.21349 0.97030 1.01715 0.94835 1.21922 0.96324 0.98953 0.97962 1.21437 0.94966 1.00516 0.98260 1.21391 1.02787 0.95022 0.94676 1.18028 0.81741 0.94706 0.93283 0.98982 1.21267 0.94214 1.17318 1.21739 0.91873 1.24928 0.97641 0.95293 0.96164 1.69942 1.10253 1.31045 1.41571 0.86694 0.78728 0.80851 0.81954 1.20286 1.21506 1.20258 1.23459 0.96230 0.99726 0.89859 0.91868 0.91572 0.95931 0.94753 0.90971 0.92037 0.90834 0.95091 0.92364 0.93621 0.90682 0.93868 0.93225 0.93409 0.94131 0.94030 0.89691 0.93068 0.90166 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.40 60.07 0.56 0.80 16 2 N -0.52 -8.11 5.55 -238.73 -1.33 -9.43 16 3 C 0.04 0.62 6.70 -2.76 -0.02 0.61 16 4 C -0.16 -2.89 5.72 -25.38 -0.15 -3.04 16 5 C 0.10 1.93 2.74 -65.85 -0.18 1.75 16 6 H 0.12 2.56 5.58 -51.93 -0.29 2.27 16 7 N -0.53 -10.96 3.79 -222.93 -0.85 -11.80 16 8 C 0.06 1.06 3.84 -4.52 -0.02 1.04 16 9 C -0.11 -1.84 5.41 -27.40 -0.15 -1.99 16 10 C -0.11 -1.90 5.91 -25.69 -0.15 -2.05 16 11 C -0.11 -2.29 5.31 -27.30 -0.15 -2.43 16 12 C -0.10 -2.33 4.83 -27.17 -0.13 -2.47 16 13 C 0.23 5.55 1.19 -71.79 -0.09 5.46 16 14 H -0.01 -0.20 7.14 -51.93 -0.37 -0.57 16 15 C -0.51 -13.39 7.39 -34.44 -0.25 -13.65 16 16 H 0.06 1.68 6.27 -52.49 -0.33 1.35 16 17 C 0.06 1.66 5.19 -17.82 -0.09 1.57 16 18 N -0.89 -24.97 11.73 55.43 0.65 -24.32 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.04 0.58 5.96 -1.90 -0.01 0.57 16 24 H 0.06 0.70 8.14 -51.94 -0.42 0.27 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.27 8.00 -51.93 -0.42 -0.15 16 27 H 0.03 0.48 7.73 -51.93 -0.40 0.08 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.06 1.13 6.13 -51.93 -0.32 0.81 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.03 0.59 5.92 -51.93 -0.31 0.28 16 32 H 0.06 0.96 5.42 -51.93 -0.28 0.68 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.35 7.25 -51.93 -0.38 0.97 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.01 6.58 -51.93 -0.34 0.67 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.95 7.10 -51.93 -0.37 0.59 16 40 H 0.08 2.24 6.24 -51.93 -0.32 1.91 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.73 5.56 -51.93 -0.29 0.44 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -26.98 308.02 -10.07 -37.05 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.35 Total: 1.57 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -0.82 Total: -13.83 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -1.52 Total: -45.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.98 -10.07 -37.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.695 kcal (2) G-P(sol) polarization free energy of solvation -26.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds