Wall clock time and date at job start Mon Mar 30 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47898 * 110.99863 * 2 1 4 4 C 1.53992 * 107.05705 * 145.85123 * 3 2 1 5 5 C 1.54592 * 105.13979 * 358.77486 * 4 3 2 6 6 H 1.08992 * 110.72787 * 96.58160 * 5 4 3 7 7 N 1.46903 * 110.72551 * 219.68854 * 5 4 3 8 8 C 1.47634 * 110.99950 * 54.43916 * 7 5 4 9 9 C 1.50816 * 108.04207 * 150.32792 * 8 7 5 10 10 C 1.53821 * 111.61920 * 95.06155 * 9 8 7 11 11 C 1.54167 * 111.97120 * 319.04199 * 10 9 8 12 12 C 1.50635 * 112.56344 * 318.50953 * 11 10 9 13 13 C 1.39778 * 111.00008 * 285.54072 * 7 5 4 14 14 H 1.09004 * 109.02366 * 68.53932 * 13 7 5 15 15 C 1.50700 * 109.01907 * 309.64379 * 13 7 5 16 16 H 1.07995 * 120.00339 * 353.26910 * 15 13 7 17 17 C 1.37878 * 119.99820 * 173.26725 * 15 13 7 18 18 N 1.31521 * 120.00304 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00068 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47197 * 59.99780 * 19 17 15 21 21 H 1.48498 * 109.47466 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46717 * 299.99948 * 19 17 15 23 23 C 1.48530 * 111.00188 * 117.40178 * 2 1 3 24 24 H 1.08988 * 109.47638 * 60.12198 * 1 2 3 25 25 H 1.08997 * 109.46939 * 180.12880 * 1 2 3 26 26 H 1.09001 * 109.46641 * 300.12220 * 1 2 3 27 27 H 1.08992 * 109.92089 * 26.49498 * 3 2 1 28 28 H 1.09004 * 110.08270 * 265.29489 * 3 2 1 29 29 H 1.08999 * 110.30715 * 239.85997 * 4 3 2 30 30 H 1.09003 * 110.30945 * 117.69127 * 4 3 2 31 31 H 1.09002 * 109.74736 * 269.96181 * 8 7 5 32 32 H 1.08997 * 109.74976 * 30.63831 * 8 7 5 33 33 H 1.08999 * 109.04770 * 215.61410 * 9 8 7 34 34 H 1.09000 * 109.05466 * 334.58271 * 9 8 7 35 35 H 1.09000 * 108.97971 * 79.68919 * 10 9 8 36 36 H 1.09003 * 108.98051 * 198.39944 * 10 9 8 37 37 H 1.08996 * 108.85668 * 79.29568 * 11 10 9 38 38 H 1.09006 * 108.85568 * 197.78478 * 11 10 9 39 39 H 1.09001 * 109.58669 * 333.13789 * 12 11 10 40 40 H 1.08998 * 109.43107 * 212.91537 * 12 11 10 41 41 H 0.96999 * 119.99695 * 179.97438 * 18 17 15 42 42 H 1.08994 * 110.67016 * 81.84365 * 23 2 1 43 43 H 1.08998 * 110.66652 * 318.70508 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3659 0.8264 5 6 3.4493 -0.0930 1.3151 6 1 4.1140 -0.6532 0.6578 7 7 3.9387 -0.1294 2.6997 8 6 3.0755 0.6747 3.5874 9 6 3.1250 0.0642 4.9655 10 6 4.1749 0.7537 5.8534 11 6 5.4710 1.0646 5.0787 12 6 5.8830 -0.0608 4.1662 13 6 5.2983 0.1898 2.7590 14 1 5.4279 1.2413 2.5025 15 6 6.0451 -0.6549 1.7592 16 1 5.5306 -1.4387 1.2232 17 6 7.3853 -0.4271 1.5287 18 7 8.0118 0.5277 2.1810 19 14 8.3109 -1.4738 0.2888 20 1 7.6860 -1.3239 -1.0500 21 1 9.7269 -1.0308 0.2260 22 1 8.2554 -2.8984 0.7043 23 6 2.0014 -0.6382 1.2310 24 1 -0.3634 0.5119 -0.8909 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3633 0.5157 0.8889 27 1 1.2759 2.0561 0.4571 28 1 2.2115 1.7001 -1.0203 29 1 3.2137 2.0428 1.6765 30 1 4.1470 1.6455 0.2021 31 1 3.4410 1.7009 3.6258 32 1 2.0512 0.6625 3.2149 33 1 2.1450 0.1608 5.4328 34 1 3.3742 -0.9933 4.8775 35 1 3.7585 1.6854 6.2364 36 1 4.4120 0.1013 6.6939 37 1 5.3177 1.9638 4.4821 38 1 6.2730 1.2491 5.7935 39 1 5.5030 -1.0052 4.5561 40 1 6.9707 -0.1004 4.1074 41 1 8.9547 0.6877 2.0191 42 1 2.0042 -1.7235 1.1314 43 1 1.4239 -0.3323 2.1034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259822590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:03 Heat of formation + Delta-G solvation = 0.340923 kcal Electronic energy + Delta-G solvation = -20507.028189 eV Core-core repulsion = 17779.428669 eV Total energy + Delta-G solvation = -2727.599521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13513 -38.75933 -35.46971 -34.84215 -32.33401 -31.70938 -29.51333 -27.86764 -26.98060 -25.57022 -24.48561 -22.38755 -21.79951 -20.64546 -19.86451 -18.32533 -17.64722 -16.73098 -16.58226 -15.74352 -15.64165 -15.37548 -15.03842 -14.77475 -14.49434 -14.28301 -14.13135 -13.48677 -13.19550 -13.06415 -12.89615 -12.76164 -12.58672 -12.44093 -12.36678 -12.21359 -12.06778 -11.95492 -11.69042 -11.36613 -11.30474 -11.04993 -10.99834 -10.62999 -10.33951 -9.32893 -8.68365 -8.06718 -6.17073 1.41817 1.42432 1.49687 2.43775 3.02625 3.21480 3.49206 3.80682 3.96120 4.05646 4.14465 4.18495 4.27927 4.36690 4.44255 4.58040 4.59862 4.60742 4.65305 4.71075 4.84591 4.89797 4.99078 5.01004 5.02746 5.08078 5.10087 5.21415 5.22081 5.29420 5.36150 5.42801 5.55982 5.64397 5.72367 5.83685 5.88935 5.91835 6.17158 6.33572 6.59060 6.99808 7.12792 7.54627 8.98453 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.009710 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.334435 B = 2882.903174 C = 4200.111295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.537 5.537 3 C 0.050 3.950 4 C -0.155 4.155 5 C 0.093 3.907 6 H 0.078 0.922 7 N -0.537 5.537 8 C 0.062 3.938 9 C -0.109 4.109 10 C -0.108 4.108 11 C -0.110 4.110 12 C -0.093 4.093 13 C 0.247 3.753 14 H -0.050 1.050 15 C -0.517 4.517 16 H 0.057 0.943 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.947 3.053 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.050 3.950 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.018 0.982 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.043 0.957 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.258 0.742 42 H 0.079 0.921 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 0.869 1.657 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.262 5.262 3 C -0.078 4.078 4 C -0.195 4.195 5 C -0.016 4.016 6 H 0.096 0.904 7 N -0.260 5.260 8 C -0.065 4.065 9 C -0.147 4.147 10 C -0.145 4.145 11 C -0.147 4.147 12 C -0.131 4.131 13 C 0.138 3.862 14 H -0.033 1.033 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.557 5.557 19 Si 0.774 3.226 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.078 4.078 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.405 0.230 1.382 13.478 hybrid contribution 1.142 1.024 -0.313 1.566 sum -12.263 1.254 1.069 12.374 Atomic orbital electron populations 1.22556 0.86267 1.02842 1.01289 1.64654 1.09531 1.14932 1.37086 1.22714 0.94824 0.90086 1.00220 1.22916 0.97648 0.99426 0.99481 1.22512 0.95278 0.93924 0.89931 0.90427 1.59000 1.03655 1.56598 1.06698 1.21866 0.96673 0.94105 0.93806 1.21346 0.98859 1.00484 0.93987 1.21873 0.94298 1.00557 0.97778 1.21335 0.97424 0.98207 0.97770 1.21197 1.00395 0.96399 0.95146 1.17694 0.83801 0.91623 0.93079 1.03301 1.21581 0.94625 1.17219 1.22113 0.92493 1.25628 0.98567 0.96422 0.97864 1.70073 1.10277 1.32445 1.42897 0.85775 0.77483 0.79491 0.79884 1.19979 1.21239 1.19694 1.23263 0.93868 0.99646 0.90988 0.90400 0.90518 0.94908 0.92669 0.90406 0.92401 0.93734 0.96399 0.90203 0.89946 0.92052 0.91552 0.91633 0.95310 0.93774 0.93957 0.93338 0.93287 0.90211 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.40 127.69 1.20 1.59 16 2 N -0.54 -15.42 5.55 -909.20 -5.05 -20.47 16 3 C 0.05 1.44 6.70 86.45 0.58 2.02 16 4 C -0.15 -5.70 5.72 31.47 0.18 -5.52 16 5 C 0.09 3.66 2.74 46.12 0.13 3.78 16 6 H 0.08 3.62 5.58 -2.39 -0.01 3.61 16 7 N -0.54 -22.36 3.79 -859.21 -3.26 -25.62 16 8 C 0.06 2.13 3.84 85.45 0.33 2.46 16 9 C -0.11 -3.30 5.41 30.16 0.16 -3.13 16 10 C -0.11 -3.32 5.91 31.27 0.18 -3.14 16 11 C -0.11 -4.41 5.31 30.22 0.16 -4.25 16 12 C -0.09 -4.45 4.83 30.31 0.15 -4.30 16 13 C 0.25 12.38 1.19 45.94 0.05 12.43 16 14 H -0.05 -2.90 7.14 -2.38 -0.02 -2.92 16 15 C -0.52 -28.46 7.39 25.60 0.19 -28.27 16 16 H 0.06 3.15 6.27 -2.91 -0.02 3.13 16 17 C 0.01 0.78 5.19 84.65 0.44 1.22 16 18 N -0.92 -53.70 11.73 21.45 0.25 -53.44 16 19 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.05 1.57 5.96 86.65 0.52 2.09 16 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.03 0.63 8.00 -2.39 -0.02 0.62 16 27 H 0.06 1.39 7.73 -2.39 -0.02 1.37 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.14 6.13 -2.39 -0.01 2.13 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.67 5.92 -2.39 -0.01 0.65 16 32 H 0.08 2.38 5.42 -2.39 -0.01 2.37 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.06 2.06 7.25 -2.39 -0.02 2.04 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.24 6.58 -2.39 -0.02 1.23 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.04 1.97 7.10 -2.39 -0.02 1.95 16 40 H 0.05 2.66 6.24 -2.39 -0.01 2.65 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.06 1.69 5.56 -2.39 -0.01 1.67 16 Total: -1.00 -60.72 308.02 -0.79 -61.51 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.97 Total: 14.42 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.27 Total: -23.03 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -8.05 Total: -99.53 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.72 -0.79 -61.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.851 kcal (2) G-P(sol) polarization free energy of solvation -60.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds