Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48534 * 111.00336 * 2 1 4 4 C 1.54933 * 103.22918 * 159.72037 * 3 2 1 5 5 C 1.54591 * 102.92615 * 322.58639 * 4 3 2 6 6 H 1.08993 * 110.31013 * 263.04721 * 5 4 3 7 7 N 1.46896 * 110.30971 * 140.87073 * 5 4 3 8 8 C 1.44274 * 111.00080 * 55.84986 * 7 5 4 9 9 C 1.54059 * 111.98453 * 219.30824 * 8 7 5 10 10 C 1.54296 * 112.29013 * 318.91604 * 9 8 7 11 11 C 1.50463 * 113.03242 * 318.30054 * 10 9 8 12 12 H 1.08995 * 109.57356 * 332.34407 * 11 10 9 13 13 C 1.50696 * 109.67930 * 212.02700 * 11 10 9 14 14 H 1.08003 * 120.00324 * 240.57646 * 13 11 10 15 15 C 1.37881 * 120.00199 * 60.56705 * 13 11 10 16 16 N 1.31519 * 119.99599 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00315 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47076 * 60.00127 * 17 15 13 19 19 H 1.48497 * 109.47241 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47145 * 300.00583 * 17 15 13 21 21 C 1.54510 * 108.84960 * 92.15547 * 11 10 9 22 22 C 1.45862 * 111.58812 * 282.80427 * 21 11 10 23 23 C 1.47906 * 111.00463 * 117.39710 * 2 1 3 24 24 H 1.08999 * 109.46875 * 302.60212 * 1 2 3 25 25 H 1.08997 * 109.47137 * 62.60028 * 1 2 3 26 26 H 1.09005 * 109.46683 * 182.60616 * 1 2 3 27 27 H 1.09004 * 110.66939 * 278.16097 * 3 2 1 28 28 H 1.09002 * 110.66619 * 41.28493 * 3 2 1 29 29 H 1.09008 * 110.72472 * 204.22643 * 4 3 2 30 30 H 1.09002 * 110.72089 * 80.94774 * 4 3 2 31 31 H 1.09001 * 108.97720 * 339.95420 * 8 7 5 32 32 H 1.09003 * 108.97362 * 98.66158 * 8 7 5 33 33 H 1.09004 * 108.91985 * 198.19090 * 9 8 7 34 34 H 1.09001 * 108.92168 * 79.64042 * 9 8 7 35 35 H 1.08999 * 108.76656 * 197.38463 * 10 9 8 36 36 H 1.08993 * 108.67909 * 79.15684 * 10 9 8 37 37 H 0.96997 * 119.99721 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.05554 * 162.26530 * 21 11 10 39 39 H 1.08994 * 109.05885 * 43.34847 * 21 11 10 40 40 H 1.09000 * 108.79642 * 300.44153 * 22 21 11 41 41 H 1.09003 * 108.70309 * 182.15402 * 22 21 11 42 42 H 1.09003 * 109.91125 * 333.50977 * 23 2 1 43 43 H 1.08997 * 109.91647 * 94.60415 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2984 0.1053 1.5930 6 1 3.2137 0.5485 2.5852 7 7 4.4422 -0.8149 1.5404 8 6 5.6873 -0.1011 1.6879 9 6 6.7856 -0.6603 0.7635 10 6 6.7738 -2.2021 0.7068 11 6 6.5532 -2.8390 2.0520 12 1 6.9212 -2.1759 2.8348 13 6 7.2870 -4.1536 2.1176 14 1 6.7396 -5.0701 2.2812 15 6 8.6573 -4.1864 1.9686 16 7 9.3240 -3.0702 1.7697 17 14 9.5670 -5.8159 2.0492 18 1 9.0680 -6.7148 0.9777 19 1 11.0212 -5.5809 1.8616 20 1 9.3348 -6.4474 3.3730 21 6 5.0397 -3.0808 2.2476 22 6 4.3395 -1.8484 2.5920 23 6 1.9992 -0.6354 1.2259 24 1 -0.3633 0.5537 0.8657 25 1 -0.3633 0.4729 -0.9123 26 1 -0.3633 -1.0267 0.0467 27 1 2.0041 1.7977 -1.0095 28 1 1.4238 2.0205 0.6729 29 1 3.8124 2.1352 0.9716 30 1 4.1115 0.8836 -0.2788 31 1 5.5239 0.9498 1.4489 32 1 6.0206 -0.1801 2.7227 33 1 7.7575 -0.3274 1.1279 34 1 6.6343 -0.2685 -0.2424 35 1 7.7285 -2.5457 0.3084 36 1 5.9784 -2.5206 0.0332 37 1 10.2881 -3.0932 1.6653 38 1 4.8958 -3.8072 3.0474 39 1 4.6211 -3.4819 1.3246 40 1 4.7600 -1.4520 3.5162 41 1 3.2868 -2.0787 2.7562 42 1 1.2759 -0.5403 2.0359 43 1 2.2090 -1.6882 1.0374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259835449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = 10.397044 kcal Electronic energy + Delta-G solvation = -19905.663630 eV Core-core repulsion = 17178.500176 eV Total energy + Delta-G solvation = -2727.163454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63022 -37.52659 -34.33823 -32.01560 -31.59735 -30.48161 -28.42011 -26.41609 -24.99960 -24.25599 -22.78707 -20.96001 -20.49610 -19.42787 -18.37002 -16.47373 -16.09044 -15.77115 -14.86995 -14.54844 -14.32071 -14.26703 -13.66104 -13.26895 -12.98074 -12.79000 -12.36751 -12.17038 -11.99759 -11.65753 -11.46234 -11.28770 -11.17767 -10.95476 -10.88214 -10.69607 -10.56925 -10.37956 -10.30504 -9.92086 -9.42171 -9.20645 -8.80201 -8.64142 -8.44349 -8.11882 -7.72563 -5.87577 -3.93049 3.37965 3.42365 3.45325 4.00096 4.29698 4.52525 4.65850 4.76597 5.15514 5.26086 5.27466 5.37638 5.42481 5.46144 5.60695 5.64216 5.71286 5.74965 5.87315 5.88209 6.03834 6.08568 6.14564 6.26383 6.31190 6.57450 6.63435 6.69894 6.79182 6.87767 6.89302 7.00469 7.10552 7.25432 7.51909 7.66697 7.76796 7.81582 7.92701 8.17452 8.30956 8.65080 9.12709 9.70350 11.17980 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.005080 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.697296 B = 5510.159546 C = 5834.623747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.516 5.516 3 C 0.036 3.964 4 C -0.117 4.117 5 C 0.075 3.925 6 H 0.039 0.961 7 N -0.511 5.511 8 C 0.058 3.942 9 C -0.099 4.099 10 C -0.087 4.087 11 C 0.057 3.943 12 H 0.020 0.980 13 C -0.511 4.511 14 H 0.051 0.949 15 C 0.060 3.940 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.113 4.113 22 C 0.066 3.934 23 C 0.045 3.955 24 H 0.023 0.977 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.258 0.742 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.038 0.962 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 9.217 -1.185 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.240 5.240 3 C -0.092 4.092 4 C -0.156 4.156 5 C -0.035 4.035 6 H 0.056 0.944 7 N -0.235 5.235 8 C -0.070 4.070 9 C -0.138 4.138 10 C -0.125 4.125 11 C 0.039 3.961 12 H 0.038 0.962 13 C -0.550 4.550 14 H 0.070 0.930 15 C -0.141 4.141 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.151 4.151 22 C -0.061 4.061 23 C -0.083 4.083 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.374 8.760 -2.141 16.130 hybrid contribution 0.255 -0.024 1.619 1.639 sum -13.119 8.735 -0.522 15.770 Atomic orbital electron populations 1.22512 0.88341 1.01917 1.00466 1.64733 1.07460 1.14671 1.37166 1.23222 0.95185 0.89953 1.00855 1.22617 0.96568 0.97275 0.99093 1.22471 0.91603 0.92657 0.96742 0.94351 1.61817 1.00723 1.12729 1.48264 1.21947 0.90085 0.95698 0.99266 1.21871 0.95861 0.99252 0.96788 1.21156 1.01205 0.90803 0.99301 1.18395 0.88273 0.95460 0.94019 0.96230 1.21277 0.91759 0.93318 1.48606 0.93037 1.24945 0.97682 0.95906 0.95540 1.69956 1.07350 1.25780 1.49583 0.86763 0.78668 0.84687 0.78457 1.20384 1.21453 1.20499 1.20704 0.99379 0.94540 1.00449 1.21095 0.99080 0.94260 0.91692 1.22967 0.94324 1.00898 0.90119 0.95806 0.91451 0.91365 0.90088 0.94217 0.91483 0.89112 0.93248 0.94585 0.92661 0.94491 0.90679 0.95420 0.93247 0.93121 0.92873 0.95442 0.93291 0.94394 0.88868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.06 0.56 0.73 16 2 N -0.52 -6.60 5.55 -238.71 -1.33 -7.92 16 3 C 0.04 0.41 6.56 -1.90 -0.01 0.39 16 4 C -0.12 -1.49 5.10 -24.88 -0.13 -1.61 16 5 C 0.07 1.06 2.62 -66.36 -0.17 0.89 16 6 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 7 N -0.51 -8.81 3.98 -229.92 -0.92 -9.73 16 8 C 0.06 1.05 4.76 -4.68 -0.02 1.03 16 9 C -0.10 -2.07 6.14 -25.50 -0.16 -2.22 16 10 C -0.09 -2.10 4.63 -27.32 -0.13 -2.22 16 11 C 0.06 1.43 1.77 -92.25 -0.16 1.26 16 12 H 0.02 0.54 7.15 -51.93 -0.37 0.16 16 13 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 14 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 15 C 0.06 1.68 5.05 -17.82 -0.09 1.59 16 16 N -0.89 -25.52 11.64 55.43 0.65 -24.87 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.11 -2.39 4.87 -29.32 -0.14 -2.53 16 22 C 0.07 1.18 4.62 -6.70 -0.03 1.15 16 23 C 0.04 0.60 5.57 -2.75 -0.02 0.59 16 24 H 0.02 0.22 8.00 -51.93 -0.42 -0.20 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.40 7.96 -51.93 -0.41 -0.01 16 29 H 0.07 0.75 7.92 -51.92 -0.41 0.34 16 30 H 0.09 1.32 7.83 -51.93 -0.41 0.91 16 31 H 0.05 0.78 6.06 -51.93 -0.31 0.46 16 32 H 0.04 0.70 6.51 -51.93 -0.34 0.36 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 2.06 5.91 -51.93 -0.31 1.76 16 36 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.05 1.06 8.01 -51.93 -0.42 0.64 16 39 H 0.05 1.15 7.59 -51.93 -0.39 0.75 16 40 H 0.03 0.51 7.24 -51.93 -0.38 0.13 16 41 H 0.05 0.78 6.49 -51.93 -0.34 0.44 16 42 H 0.04 0.46 7.73 -51.93 -0.40 0.06 16 43 H 0.09 1.42 7.12 -51.93 -0.37 1.05 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -28.59 315.38 -10.38 -38.97 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -7.73 Total: -2.27 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.79 Total: -15.47 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -1.60 Total: -42.52 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.59 -10.38 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.369 kcal (2) G-P(sol) polarization free energy of solvation -28.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds