Wall clock time and date at job start Mon Mar 30 2020 04:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48534 * 111.00336 * 2 1 4 4 C 1.54933 * 103.22918 * 159.72037 * 3 2 1 5 5 C 1.54591 * 102.92615 * 322.58639 * 4 3 2 6 6 H 1.08993 * 110.31013 * 263.04721 * 5 4 3 7 7 N 1.46896 * 110.30971 * 140.87073 * 5 4 3 8 8 C 1.44274 * 111.00080 * 55.84986 * 7 5 4 9 9 C 1.54059 * 111.98453 * 219.30824 * 8 7 5 10 10 C 1.54296 * 112.29013 * 318.91604 * 9 8 7 11 11 C 1.50463 * 113.03242 * 318.30054 * 10 9 8 12 12 H 1.08995 * 109.57356 * 332.34407 * 11 10 9 13 13 C 1.50696 * 109.67930 * 212.02700 * 11 10 9 14 14 H 1.08003 * 120.00324 * 240.57646 * 13 11 10 15 15 C 1.37881 * 120.00199 * 60.56705 * 13 11 10 16 16 N 1.31519 * 119.99599 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00315 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47076 * 60.00127 * 17 15 13 19 19 H 1.48497 * 109.47241 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47145 * 300.00583 * 17 15 13 21 21 C 1.54510 * 108.84960 * 92.15547 * 11 10 9 22 22 C 1.45862 * 111.58812 * 282.80427 * 21 11 10 23 23 C 1.47906 * 111.00463 * 117.39710 * 2 1 3 24 24 H 1.08999 * 109.46875 * 302.60212 * 1 2 3 25 25 H 1.08997 * 109.47137 * 62.60028 * 1 2 3 26 26 H 1.09005 * 109.46683 * 182.60616 * 1 2 3 27 27 H 1.09004 * 110.66939 * 278.16097 * 3 2 1 28 28 H 1.09002 * 110.66619 * 41.28493 * 3 2 1 29 29 H 1.09008 * 110.72472 * 204.22643 * 4 3 2 30 30 H 1.09002 * 110.72089 * 80.94774 * 4 3 2 31 31 H 1.09001 * 108.97720 * 339.95420 * 8 7 5 32 32 H 1.09003 * 108.97362 * 98.66158 * 8 7 5 33 33 H 1.09004 * 108.91985 * 198.19090 * 9 8 7 34 34 H 1.09001 * 108.92168 * 79.64042 * 9 8 7 35 35 H 1.08999 * 108.76656 * 197.38463 * 10 9 8 36 36 H 1.08993 * 108.67909 * 79.15684 * 10 9 8 37 37 H 0.96997 * 119.99721 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.05554 * 162.26530 * 21 11 10 39 39 H 1.08994 * 109.05885 * 43.34847 * 21 11 10 40 40 H 1.09000 * 108.79642 * 300.44153 * 22 21 11 41 41 H 1.09003 * 108.70309 * 182.15402 * 22 21 11 42 42 H 1.09003 * 109.91125 * 333.50977 * 23 2 1 43 43 H 1.08997 * 109.91647 * 94.60415 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3867 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2984 0.1053 1.5930 6 1 3.2137 0.5485 2.5852 7 7 4.4422 -0.8149 1.5404 8 6 5.6873 -0.1011 1.6879 9 6 6.7856 -0.6603 0.7635 10 6 6.7738 -2.2021 0.7068 11 6 6.5532 -2.8390 2.0520 12 1 6.9212 -2.1759 2.8348 13 6 7.2870 -4.1536 2.1176 14 1 6.7396 -5.0701 2.2812 15 6 8.6573 -4.1864 1.9686 16 7 9.3240 -3.0702 1.7697 17 14 9.5670 -5.8159 2.0492 18 1 9.0680 -6.7148 0.9777 19 1 11.0212 -5.5809 1.8616 20 1 9.3348 -6.4474 3.3730 21 6 5.0397 -3.0808 2.2476 22 6 4.3395 -1.8484 2.5920 23 6 1.9992 -0.6354 1.2259 24 1 -0.3633 0.5537 0.8657 25 1 -0.3633 0.4729 -0.9123 26 1 -0.3633 -1.0267 0.0467 27 1 2.0041 1.7977 -1.0095 28 1 1.4238 2.0205 0.6729 29 1 3.8124 2.1352 0.9716 30 1 4.1115 0.8836 -0.2788 31 1 5.5239 0.9498 1.4489 32 1 6.0206 -0.1801 2.7227 33 1 7.7575 -0.3274 1.1279 34 1 6.6343 -0.2685 -0.2424 35 1 7.7285 -2.5457 0.3084 36 1 5.9784 -2.5206 0.0332 37 1 10.2881 -3.0932 1.6653 38 1 4.8958 -3.8072 3.0474 39 1 4.6211 -3.4819 1.3246 40 1 4.7600 -1.4520 3.5162 41 1 3.2868 -2.0787 2.7562 42 1 1.2759 -0.5403 2.0359 43 1 2.2090 -1.6882 1.0374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259835449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:36 Heat of formation + Delta-G solvation = -7.987934 kcal Electronic energy + Delta-G solvation = -19906.460862 eV Core-core repulsion = 17178.500176 eV Total energy + Delta-G solvation = -2727.960687 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85812 -38.86358 -36.02356 -33.72519 -33.25775 -31.77093 -29.56688 -28.11757 -26.25006 -25.71890 -24.55662 -22.02056 -21.80573 -20.84224 -20.14008 -18.34100 -17.43412 -16.85785 -16.55117 -16.20305 -15.55220 -15.47836 -14.97692 -14.84978 -14.52705 -13.97255 -13.77648 -13.60866 -13.33002 -13.20666 -12.83244 -12.68757 -12.59008 -12.50727 -12.32820 -12.21131 -12.05162 -11.85924 -11.75445 -11.47595 -11.25657 -11.06122 -10.72784 -10.67867 -10.21706 -9.33892 -9.09688 -8.02745 -6.15704 1.42396 1.43724 1.50982 2.46913 2.95306 3.15872 3.24516 3.64161 3.80443 4.04474 4.19894 4.25013 4.36968 4.43177 4.48234 4.49977 4.56905 4.63056 4.68724 4.72218 4.85358 4.90586 4.94145 4.96082 4.97883 5.02671 5.08531 5.10532 5.17777 5.29428 5.36355 5.44128 5.55627 5.73492 5.85709 5.94922 6.09421 6.15273 6.22674 6.33945 6.44291 6.54338 6.99432 7.51144 9.01410 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.041862 B = 0.005080 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.697296 B = 5510.159546 C = 5834.623747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.539 5.539 3 C 0.042 3.958 4 C -0.116 4.116 5 C 0.072 3.928 6 H 0.050 0.950 7 N -0.521 5.521 8 C 0.069 3.931 9 C -0.094 4.094 10 C -0.076 4.076 11 C 0.056 3.944 12 H -0.009 1.009 13 C -0.536 4.536 14 H 0.048 0.952 15 C 0.013 3.987 16 N -0.912 5.912 17 Si 0.948 3.052 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.101 4.101 22 C 0.070 3.930 23 C 0.049 3.951 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.022 0.978 37 H 0.258 0.742 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.412 10.067 -1.126 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.086 4.086 4 C -0.154 4.154 5 C -0.037 4.037 6 H 0.068 0.932 7 N -0.246 5.246 8 C -0.060 4.060 9 C -0.133 4.133 10 C -0.114 4.114 11 C 0.038 3.962 12 H 0.009 0.991 13 C -0.574 4.574 14 H 0.066 0.934 15 C -0.186 4.186 16 N -0.551 5.551 17 Si 0.774 3.226 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.139 4.139 22 C -0.057 4.057 23 C -0.079 4.079 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.102 9.613 -2.083 18.023 hybrid contribution 0.768 -0.293 1.563 1.766 sum -14.334 9.320 -0.520 17.105 Atomic orbital electron populations 1.22546 0.86748 1.02296 1.01536 1.64701 1.09146 1.15659 1.36879 1.23227 0.94143 0.89498 1.01747 1.22611 0.97416 0.97342 0.98045 1.22597 0.90529 0.92621 0.97914 0.93213 1.61695 1.01420 1.13479 1.48011 1.21771 0.89680 0.97107 0.97427 1.21767 0.96395 0.96709 0.98380 1.20954 0.98686 0.93321 0.98414 1.18342 0.90693 0.93837 0.93341 0.99116 1.21675 0.92547 0.94325 1.48892 0.93387 1.25686 0.98522 0.99186 0.95167 1.70089 1.07424 1.27628 1.49965 0.85769 0.77422 0.80717 0.78662 1.19895 1.21018 1.19775 1.20548 0.96821 0.96425 1.00095 1.20946 1.00053 0.93125 0.91601 1.22855 0.94332 0.99636 0.91072 0.94691 0.90349 0.91415 0.89240 0.92484 0.89651 0.91102 0.90352 0.96124 0.94508 0.93093 0.94487 0.95876 0.93330 0.93226 0.93535 0.95862 0.90614 0.92807 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 127.69 1.20 1.49 16 2 N -0.54 -12.37 5.55 -909.14 -5.05 -17.42 16 3 C 0.04 0.80 6.56 86.65 0.57 1.37 16 4 C -0.12 -2.61 5.10 31.80 0.16 -2.45 16 5 C 0.07 1.87 2.62 45.79 0.12 1.99 16 6 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 7 N -0.52 -17.36 3.98 -881.34 -3.51 -20.87 16 8 C 0.07 2.43 4.76 87.15 0.41 2.85 16 9 C -0.09 -3.96 6.14 31.39 0.19 -3.77 16 10 C -0.08 -3.77 4.63 30.21 0.14 -3.63 16 11 C 0.06 2.90 1.77 -11.85 -0.02 2.88 16 12 H -0.01 -0.53 7.15 -2.39 -0.02 -0.54 16 13 C -0.54 -30.57 8.46 25.60 0.22 -30.35 16 14 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 15 C 0.01 0.74 5.05 84.65 0.43 1.16 16 16 N -0.91 -53.85 11.64 21.45 0.25 -53.60 16 17 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 C -0.10 -4.31 4.87 28.92 0.14 -4.17 16 22 C 0.07 2.45 4.62 83.94 0.39 2.84 16 23 C 0.05 1.21 5.57 86.45 0.48 1.69 16 24 H 0.03 0.53 8.00 -2.39 -0.02 0.51 16 25 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.06 0.92 7.96 -2.39 -0.02 0.90 16 29 H 0.08 1.60 7.92 -2.38 -0.02 1.58 16 30 H 0.07 1.91 7.83 -2.39 -0.02 1.89 16 31 H 0.08 2.31 6.06 -2.39 -0.01 2.29 16 32 H 0.02 0.79 6.51 -2.39 -0.02 0.78 16 33 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.04 2.11 5.91 -2.39 -0.01 2.09 16 36 H 0.02 1.13 7.38 -2.39 -0.02 1.11 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.05 2.08 8.01 -2.39 -0.02 2.06 16 39 H 0.05 2.02 7.59 -2.39 -0.02 2.00 16 40 H 0.02 0.84 7.24 -2.39 -0.02 0.82 16 41 H 0.08 2.26 6.49 -2.39 -0.02 2.25 16 42 H 0.05 1.13 7.73 -2.39 -0.02 1.12 16 43 H 0.07 2.06 7.12 -2.39 -0.02 2.05 16 Total: -1.00 -62.47 315.38 -0.90 -63.37 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.95 Total: 9.81 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.43 Total: -28.10 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -8.31 Total: -91.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.47 -0.90 -63.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.383 kcal (2) G-P(sol) polarization free energy of solvation -62.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds