Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47900 * 110.99909 * 2 1 4 4 C 1.53994 * 107.06273 * 145.84532 * 3 2 1 5 5 C 1.54597 * 105.13720 * 358.77098 * 4 3 2 6 6 H 1.08997 * 110.72205 * 96.57782 * 5 4 3 7 7 N 1.46902 * 110.72468 * 219.68612 * 5 4 3 8 8 C 1.47943 * 110.99871 * 317.41009 * 7 5 4 9 9 C 1.53923 * 113.32807 * 192.18949 * 8 7 5 10 10 C 1.50539 * 112.93791 * 317.75293 * 9 8 7 11 11 C 1.54521 * 108.86799 * 91.75495 * 10 9 8 12 12 H 1.09002 * 109.04412 * 43.32950 * 11 10 9 13 13 C 1.50696 * 108.98097 * 162.24358 * 11 10 9 14 14 H 1.08009 * 119.99781 * 121.07983 * 13 11 10 15 15 C 1.37881 * 120.00309 * 301.07574 * 13 11 10 16 16 N 1.31510 * 120.00151 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99814 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47214 * 89.99841 * 17 15 13 19 19 H 1.48495 * 109.47222 * 209.99928 * 17 15 13 20 20 H 1.48507 * 109.47012 * 329.99720 * 17 15 13 21 21 C 1.45878 * 111.66178 * 282.76617 * 11 10 9 22 22 C 1.44298 * 110.99846 * 189.99971 * 7 5 4 23 23 C 1.48531 * 110.99925 * 117.39117 * 2 1 3 24 24 H 1.08990 * 109.47213 * 60.12702 * 1 2 3 25 25 H 1.09001 * 109.47170 * 180.13435 * 1 2 3 26 26 H 1.09009 * 109.47268 * 300.12540 * 1 2 3 27 27 H 1.09006 * 109.91618 * 26.48602 * 3 2 1 28 28 H 1.09003 * 109.91637 * 265.19705 * 3 2 1 29 29 H 1.09004 * 110.30809 * 239.86085 * 4 3 2 30 30 H 1.08995 * 110.39308 * 117.72809 * 4 3 2 31 31 H 1.09001 * 108.71214 * 313.18386 * 8 7 5 32 32 H 1.09000 * 108.70840 * 71.19284 * 8 7 5 33 33 H 1.09001 * 108.78922 * 78.64574 * 9 8 7 34 34 H 1.08996 * 108.78308 * 196.97564 * 9 8 7 35 35 H 1.08994 * 109.57265 * 331.93207 * 10 9 8 36 36 H 1.08999 * 109.56391 * 211.56767 * 10 9 8 37 37 H 0.96994 * 120.00198 * 179.97438 * 16 15 13 38 38 H 1.09005 * 108.83724 * 182.31593 * 21 11 10 39 39 H 1.08999 * 108.84698 * 300.67340 * 21 11 10 40 40 H 1.09003 * 109.69882 * 101.64503 * 22 7 5 41 41 H 1.09000 * 109.73266 * 341.07454 * 22 7 5 42 42 H 1.09003 * 110.66855 * 81.84760 * 23 2 1 43 43 H 1.09002 * 110.66859 * 318.71632 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8265 5 6 3.4492 -0.0928 1.3155 6 1 4.1140 -0.6530 0.6581 7 7 3.9386 -0.1290 2.7001 8 6 5.0183 0.8610 2.9068 9 6 5.7718 0.6726 4.2357 10 6 4.8563 0.3688 5.3914 11 6 4.7150 -1.1639 5.5275 12 1 5.6965 -1.6234 5.4102 13 6 4.1818 -1.4871 6.8994 14 1 3.2538 -2.0297 7.0041 15 6 4.8787 -1.0902 8.0210 16 7 4.4137 -1.3727 9.2183 17 14 6.4834 -0.1513 7.8399 18 1 6.2025 1.3063 7.8028 19 1 7.3679 -0.4558 8.9931 20 1 7.1554 -0.5582 6.5796 21 6 3.8097 -1.7125 4.5236 22 6 4.3026 -1.4712 3.0849 23 6 2.0013 -0.6380 1.2312 24 1 -0.3633 0.5118 -0.8910 25 1 -0.3633 -1.0277 0.0024 26 1 -0.3634 0.5158 0.8889 27 1 1.2757 2.0561 0.4571 28 1 2.2122 1.6967 -1.0212 29 1 3.2136 2.0431 1.6766 30 1 4.1478 1.6461 0.2037 31 1 5.7307 0.7780 2.0860 32 1 4.5841 1.8607 2.8897 33 1 6.4805 -0.1480 4.1241 34 1 6.3246 1.5853 4.4582 35 1 3.8771 0.8109 5.2075 36 1 5.2779 0.7795 6.3088 37 1 4.9041 -1.0939 10.0073 38 1 3.7119 -2.7858 4.6869 39 1 2.8301 -1.2496 4.6424 40 1 5.3860 -1.5842 3.0439 41 1 3.8329 -2.1875 2.4108 42 1 2.0041 -1.7234 1.1317 43 1 1.4237 -0.3321 2.1035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259835451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = 15.105585 kcal Electronic energy + Delta-G solvation = -19936.794394 eV Core-core repulsion = 17209.835117 eV Total energy + Delta-G solvation = -2726.959277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68002 -37.81727 -34.70860 -32.19711 -31.76719 -30.83029 -28.56214 -26.69957 -25.00276 -24.82832 -22.74038 -20.91745 -20.75841 -19.22640 -18.92186 -16.72456 -16.49125 -16.06907 -14.96983 -14.83091 -14.58167 -14.12552 -13.78473 -13.51381 -13.14953 -13.00994 -12.65873 -12.48069 -12.26155 -11.83153 -11.70812 -11.62059 -11.34438 -11.21076 -11.08479 -10.82946 -10.73833 -10.48194 -10.29842 -9.88849 -9.74313 -9.46004 -9.05783 -8.77998 -8.54359 -8.44280 -7.81558 -5.99752 -3.97479 3.31423 3.42385 3.45528 3.76501 4.29550 4.47973 4.62421 4.66424 4.97014 5.21748 5.24103 5.30835 5.33949 5.36329 5.44929 5.52300 5.62726 5.69711 5.70239 5.73228 5.81625 5.85912 5.92156 5.98284 6.05710 6.16753 6.17635 6.30704 6.47145 6.55048 6.66709 6.75587 6.88929 6.91027 7.12419 7.22068 7.43960 7.54439 7.59220 7.80228 7.89109 8.62119 9.05273 9.64202 11.13679 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.005611 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.807683 B = 4989.315240 C = 5387.896551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.526 5.526 3 C 0.038 3.962 4 C -0.131 4.131 5 C 0.085 3.915 6 H 0.052 0.948 7 N -0.536 5.536 8 C 0.071 3.929 9 C -0.124 4.124 10 C -0.114 4.114 11 C 0.014 3.986 12 H 0.017 0.983 13 C -0.509 4.509 14 H 0.071 0.929 15 C 0.066 3.934 16 N -0.906 5.906 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.302 1.302 20 H -0.265 1.265 21 C -0.084 4.084 22 C 0.060 3.940 23 C 0.046 3.954 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 5.162 -18.287 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.250 5.250 3 C -0.090 4.090 4 C -0.169 4.169 5 C -0.024 4.024 6 H 0.069 0.931 7 N -0.261 5.261 8 C -0.055 4.055 9 C -0.161 4.161 10 C -0.151 4.151 11 C -0.004 4.004 12 H 0.035 0.965 13 C -0.547 4.547 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.722 3.278 18 H -0.208 1.208 19 H -0.230 1.230 20 H -0.190 1.190 21 C -0.122 4.122 22 C -0.068 4.068 23 C -0.083 4.083 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.590 5.013 -18.273 19.125 hybrid contribution 1.232 0.818 0.318 1.513 sum -1.359 5.831 -17.955 18.927 Atomic orbital electron populations 1.22496 0.87891 1.02170 1.00619 1.64713 1.08139 1.14934 1.37256 1.22824 0.95931 0.90079 1.00160 1.22598 0.97315 0.97311 0.99703 1.22487 0.95480 0.95457 0.88966 0.93059 1.60763 1.37772 1.07656 1.19918 1.22334 0.91211 0.95584 0.96417 1.21528 0.98741 1.00785 0.95092 1.21688 0.98735 1.00086 0.94592 1.18165 0.95841 0.90937 0.95500 0.96462 1.21175 1.09080 1.36006 0.88461 0.91089 1.25061 0.97412 0.95725 0.95243 1.69913 1.39421 1.47479 0.97632 0.86818 0.84013 0.79931 0.77078 1.20787 1.22993 1.18951 1.20355 1.00555 0.99808 0.91480 1.21981 0.98522 0.87801 0.98449 1.23246 0.94650 0.99342 0.91015 0.91592 0.91289 0.95185 0.93662 0.90688 0.90043 0.91372 0.95928 0.91472 0.92683 0.92873 0.91671 0.93444 0.92874 0.93081 0.91986 0.94411 0.92487 0.90294 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.40 60.07 0.56 0.73 16 2 N -0.53 -6.12 5.55 -238.71 -1.33 -7.44 16 3 C 0.04 0.41 6.70 -2.76 -0.02 0.39 16 4 C -0.13 -1.48 5.55 -25.37 -0.14 -1.62 16 5 C 0.09 1.11 2.60 -65.85 -0.17 0.94 16 6 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 7 N -0.54 -8.22 3.89 -224.43 -0.87 -9.09 16 8 C 0.07 1.07 4.53 -2.77 -0.01 1.06 16 9 C -0.12 -2.20 5.28 -27.48 -0.14 -2.34 16 10 C -0.11 -2.45 4.18 -27.16 -0.11 -2.57 16 11 C 0.01 0.33 1.29 -94.35 -0.12 0.21 16 12 H 0.02 0.42 6.63 -51.93 -0.34 0.08 16 13 C -0.51 -14.42 9.07 -34.44 -0.31 -14.74 16 14 H 0.07 2.18 7.96 -52.48 -0.42 1.76 16 15 C 0.07 1.93 5.44 -17.82 -0.10 1.84 16 16 N -0.91 -28.18 13.96 55.43 0.77 -27.40 16 17 Si 0.89 22.40 24.37 -169.99 -4.14 18.26 16 18 H -0.28 -6.88 6.75 56.52 0.38 -6.50 16 19 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 20 H -0.26 -6.34 6.51 56.52 0.37 -5.97 16 21 C -0.08 -1.69 4.49 -29.59 -0.13 -1.82 16 22 C 0.06 0.99 5.19 -4.70 -0.02 0.97 16 23 C 0.05 0.58 5.72 -1.90 -0.01 0.57 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.30 8.00 -51.92 -0.42 -0.12 16 27 H 0.04 0.46 7.73 -51.93 -0.40 0.06 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.97 6.48 -51.93 -0.34 0.63 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.02 0.31 8.02 -51.93 -0.42 -0.11 16 32 H 0.07 0.94 6.50 -51.93 -0.34 0.60 16 33 H 0.05 1.01 6.66 -51.93 -0.35 0.66 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.41 7.79 -51.93 -0.40 1.01 16 36 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 39 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.04 0.63 6.79 -51.93 -0.35 0.28 16 41 H 0.06 0.84 7.06 -51.93 -0.37 0.47 16 42 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 43 H 0.06 0.86 7.97 -51.93 -0.41 0.44 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -30.03 309.59 -9.33 -39.36 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.69 Total: -1.97 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.74 Total: -16.38 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -1.43 Total: -43.93 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.03 -9.33 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.466 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds