Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47900 * 110.99909 * 2 1 4 4 C 1.53994 * 107.06273 * 145.84532 * 3 2 1 5 5 C 1.54597 * 105.13720 * 358.77098 * 4 3 2 6 6 H 1.08997 * 110.72205 * 96.57782 * 5 4 3 7 7 N 1.46902 * 110.72468 * 219.68612 * 5 4 3 8 8 C 1.47943 * 110.99871 * 317.41009 * 7 5 4 9 9 C 1.53923 * 113.32807 * 192.18949 * 8 7 5 10 10 C 1.50539 * 112.93791 * 317.75293 * 9 8 7 11 11 C 1.54521 * 108.86799 * 91.75495 * 10 9 8 12 12 H 1.09002 * 109.04412 * 43.32950 * 11 10 9 13 13 C 1.50696 * 108.98097 * 162.24358 * 11 10 9 14 14 H 1.08009 * 119.99781 * 121.07983 * 13 11 10 15 15 C 1.37881 * 120.00309 * 301.07574 * 13 11 10 16 16 N 1.31510 * 120.00151 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99814 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47214 * 89.99841 * 17 15 13 19 19 H 1.48495 * 109.47222 * 209.99928 * 17 15 13 20 20 H 1.48507 * 109.47012 * 329.99720 * 17 15 13 21 21 C 1.45878 * 111.66178 * 282.76617 * 11 10 9 22 22 C 1.44298 * 110.99846 * 189.99971 * 7 5 4 23 23 C 1.48531 * 110.99925 * 117.39117 * 2 1 3 24 24 H 1.08990 * 109.47213 * 60.12702 * 1 2 3 25 25 H 1.09001 * 109.47170 * 180.13435 * 1 2 3 26 26 H 1.09009 * 109.47268 * 300.12540 * 1 2 3 27 27 H 1.09006 * 109.91618 * 26.48602 * 3 2 1 28 28 H 1.09003 * 109.91637 * 265.19705 * 3 2 1 29 29 H 1.09004 * 110.30809 * 239.86085 * 4 3 2 30 30 H 1.08995 * 110.39308 * 117.72809 * 4 3 2 31 31 H 1.09001 * 108.71214 * 313.18386 * 8 7 5 32 32 H 1.09000 * 108.70840 * 71.19284 * 8 7 5 33 33 H 1.09001 * 108.78922 * 78.64574 * 9 8 7 34 34 H 1.08996 * 108.78308 * 196.97564 * 9 8 7 35 35 H 1.08994 * 109.57265 * 331.93207 * 10 9 8 36 36 H 1.08999 * 109.56391 * 211.56767 * 10 9 8 37 37 H 0.96994 * 120.00198 * 179.97438 * 16 15 13 38 38 H 1.09005 * 108.83724 * 182.31593 * 21 11 10 39 39 H 1.08999 * 108.84698 * 300.67340 * 21 11 10 40 40 H 1.09003 * 109.69882 * 101.64503 * 22 7 5 41 41 H 1.09000 * 109.73266 * 341.07454 * 22 7 5 42 42 H 1.09003 * 110.66855 * 81.84760 * 23 2 1 43 43 H 1.09002 * 110.66859 * 318.71632 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2983 1.3660 0.8265 5 6 3.4492 -0.0928 1.3155 6 1 4.1140 -0.6530 0.6581 7 7 3.9386 -0.1290 2.7001 8 6 5.0183 0.8610 2.9068 9 6 5.7718 0.6726 4.2357 10 6 4.8563 0.3688 5.3914 11 6 4.7150 -1.1639 5.5275 12 1 5.6965 -1.6234 5.4102 13 6 4.1818 -1.4871 6.8994 14 1 3.2538 -2.0297 7.0041 15 6 4.8787 -1.0902 8.0210 16 7 4.4137 -1.3727 9.2183 17 14 6.4834 -0.1513 7.8399 18 1 6.2025 1.3063 7.8028 19 1 7.3679 -0.4558 8.9931 20 1 7.1554 -0.5582 6.5796 21 6 3.8097 -1.7125 4.5236 22 6 4.3026 -1.4712 3.0849 23 6 2.0013 -0.6380 1.2312 24 1 -0.3633 0.5118 -0.8910 25 1 -0.3633 -1.0277 0.0024 26 1 -0.3634 0.5158 0.8889 27 1 1.2757 2.0561 0.4571 28 1 2.2122 1.6967 -1.0212 29 1 3.2136 2.0431 1.6766 30 1 4.1478 1.6461 0.2037 31 1 5.7307 0.7780 2.0860 32 1 4.5841 1.8607 2.8897 33 1 6.4805 -0.1480 4.1241 34 1 6.3246 1.5853 4.4582 35 1 3.8771 0.8109 5.2075 36 1 5.2779 0.7795 6.3088 37 1 4.9041 -1.0939 10.0073 38 1 3.7119 -2.7858 4.6869 39 1 2.8301 -1.2496 4.6424 40 1 5.3860 -1.5842 3.0439 41 1 3.8329 -2.1875 2.4108 42 1 2.0041 -1.7234 1.1317 43 1 1.4237 -0.3321 2.1035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259835451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = -6.083729 kcal Electronic energy + Delta-G solvation = -19937.713231 eV Core-core repulsion = 17209.835117 eV Total energy + Delta-G solvation = -2727.878114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81027 -39.08184 -36.20598 -34.08970 -33.24664 -32.00339 -29.61557 -28.26114 -26.34062 -26.00748 -24.40872 -21.91838 -21.82903 -20.97590 -20.14447 -18.84117 -17.68600 -17.07481 -16.63954 -16.20329 -15.68564 -15.22325 -15.10720 -14.86080 -14.56037 -14.39959 -14.13966 -13.94864 -13.65727 -13.33433 -12.96112 -12.69635 -12.50409 -12.48062 -12.39230 -12.29485 -11.95178 -11.81754 -11.63634 -11.51281 -11.38780 -11.26497 -10.94763 -10.74101 -10.57311 -9.42763 -8.98982 -8.27307 -6.30090 1.30766 1.36592 1.48231 2.35162 2.75013 3.07817 3.32488 3.66427 3.77291 3.97403 4.08199 4.18544 4.27652 4.33813 4.37048 4.41237 4.50700 4.56221 4.61944 4.63814 4.75414 4.81413 4.82009 4.85187 4.94229 4.98804 4.99522 5.04088 5.10005 5.18286 5.20504 5.24976 5.47661 5.51431 5.74064 5.76442 5.83384 5.86257 6.04770 6.32639 6.40705 6.44713 6.78142 7.35710 8.89806 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.005611 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.807683 B = 4989.315240 C = 5387.896551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.533 5.533 3 C 0.038 3.962 4 C -0.126 4.126 5 C 0.087 3.913 6 H 0.057 0.943 7 N -0.551 5.551 8 C 0.075 3.925 9 C -0.122 4.122 10 C -0.107 4.107 11 C 0.018 3.982 12 H 0.014 0.986 13 C -0.518 4.518 14 H 0.026 0.974 15 C 0.006 3.994 16 N -0.956 5.956 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.305 1.305 20 H -0.242 1.242 21 C -0.080 4.080 22 C 0.075 3.925 23 C 0.048 3.952 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 6.766 -21.258 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.257 5.257 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.022 4.022 6 H 0.075 0.925 7 N -0.276 5.276 8 C -0.051 4.051 9 C -0.160 4.160 10 C -0.145 4.145 11 C 0.000 4.000 12 H 0.032 0.968 13 C -0.556 4.556 14 H 0.045 0.955 15 C -0.190 4.190 16 N -0.597 5.597 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.233 1.233 20 H -0.165 1.165 21 C -0.118 4.118 22 C -0.053 4.053 23 C -0.081 4.081 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.149 6.623 -21.282 22.318 hybrid contribution 0.635 0.248 1.271 1.443 sum -0.515 6.872 -20.010 21.164 Atomic orbital electron populations 1.22545 0.86984 1.02572 1.01124 1.64744 1.09106 1.15622 1.36232 1.22883 0.95620 0.89496 1.00977 1.22581 0.98304 0.95743 0.99782 1.22504 0.95222 0.96931 0.87524 0.92522 1.60632 1.38229 1.06977 1.21806 1.22309 0.91439 0.95987 0.95407 1.21481 0.98124 1.01639 0.94768 1.21514 0.99441 0.97824 0.95703 1.18143 0.95775 0.92803 0.93307 0.96776 1.21567 1.07539 1.34985 0.91509 0.95534 1.25968 1.01448 0.96885 0.94653 1.70075 1.41472 1.49456 0.98691 0.85753 0.79207 0.79002 0.77742 1.19360 1.23288 1.16530 1.20248 0.99128 0.98710 0.93761 1.21723 0.98551 0.89241 0.95786 1.23166 0.94614 0.99398 0.90901 0.90000 0.91043 0.95713 0.93542 0.89162 0.90637 0.89671 0.93630 0.90144 0.92948 0.90835 0.92336 0.95346 0.92790 0.94193 0.93695 0.94125 0.90658 0.90472 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 127.69 1.20 1.49 16 2 N -0.53 -11.15 5.55 -909.13 -5.05 -16.20 16 3 C 0.04 0.69 6.70 86.45 0.58 1.27 16 4 C -0.13 -2.40 5.55 31.47 0.17 -2.23 16 5 C 0.09 2.01 2.60 46.12 0.12 2.13 16 6 H 0.06 1.29 8.06 -2.39 -0.02 1.27 16 7 N -0.55 -15.52 3.89 -863.95 -3.36 -18.88 16 8 C 0.08 1.97 4.53 86.41 0.39 2.36 16 9 C -0.12 -3.94 5.28 30.11 0.16 -3.78 16 10 C -0.11 -4.49 4.18 30.31 0.13 -4.36 16 11 C 0.02 0.86 1.29 -13.21 -0.02 0.85 16 12 H 0.01 0.68 6.63 -2.39 -0.02 0.66 16 13 C -0.52 -30.46 9.07 25.60 0.23 -30.22 16 14 H 0.03 1.73 7.96 -2.91 -0.02 1.71 16 15 C 0.01 0.38 5.44 84.66 0.46 0.84 16 16 N -0.96 -61.67 13.96 21.45 0.30 -61.38 16 17 Si 0.96 46.26 24.37 68.60 1.67 47.93 16 18 H -0.27 -12.30 6.75 99.48 0.67 -11.63 16 19 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 20 H -0.24 -10.71 6.51 99.48 0.65 -10.06 16 21 C -0.08 -3.24 4.49 28.74 0.13 -3.11 16 22 C 0.08 2.33 5.19 87.12 0.45 2.78 16 23 C 0.05 1.14 5.72 86.65 0.50 1.63 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.02 0.46 8.00 -2.38 -0.02 0.44 16 27 H 0.05 0.83 7.73 -2.38 -0.02 0.81 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.55 6.48 -2.39 -0.02 1.54 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.02 8.02 -2.39 -0.02 1.01 16 32 H 0.08 1.93 6.50 -2.39 -0.02 1.91 16 33 H 0.05 1.72 6.66 -2.39 -0.02 1.71 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 36 H 0.03 1.29 3.28 -2.39 -0.01 1.28 16 37 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 38 H 0.04 1.65 8.11 -2.38 -0.02 1.63 16 39 H 0.04 1.94 8.08 -2.39 -0.02 1.92 16 40 H 0.04 1.25 6.79 -2.39 -0.02 1.23 16 41 H 0.08 2.06 7.06 -2.39 -0.02 2.04 16 42 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 43 H 0.04 1.14 7.97 -2.39 -0.02 1.12 16 Total: -1.00 -66.69 309.59 -1.08 -67.77 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.86 Total: 11.10 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.50 Total: -30.35 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -8.11 Total: -96.45 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.67 Total: 47.93 kcal Total: -66.69 -1.08 -67.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259835451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.685 kcal (2) G-P(sol) polarization free energy of solvation -66.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds