Wall clock time and date at job start Mon Mar 30 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48524 * 111.00235 * 2 1 4 4 C 1.54940 * 103.22959 * 200.27816 * 3 2 1 5 5 C 1.54600 * 102.91747 * 37.41853 * 4 3 2 6 6 H 1.08993 * 110.39590 * 96.99838 * 5 4 3 7 7 N 1.46897 * 110.30775 * 219.12976 * 5 4 3 8 8 C 1.47948 * 111.00614 * 63.20855 * 7 5 4 9 9 C 1.53911 * 113.33516 * 192.17632 * 8 7 5 10 10 C 1.50529 * 112.93578 * 317.76238 * 9 8 7 11 11 C 1.54513 * 108.85530 * 91.75944 * 10 9 8 12 12 C 1.45884 * 111.68198 * 282.73996 * 11 10 9 13 13 H 1.08997 * 108.84371 * 300.78171 * 12 11 10 14 14 C 1.50692 * 108.84637 * 182.31346 * 12 11 10 15 15 H 1.07999 * 120.00279 * 332.66705 * 14 12 11 16 16 C 1.37877 * 119.99950 * 152.66677 * 14 12 11 17 17 N 1.31516 * 120.00124 * 6.65982 * 16 14 12 18 18 Si 1.86803 * 120.00303 * 186.65736 * 16 14 12 19 19 H 1.48494 * 109.47401 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46904 * 300.00122 * 18 16 14 21 21 H 1.48496 * 109.47311 * 59.99773 * 18 16 14 22 22 C 1.44397 * 111.05113 * 295.87615 * 7 5 4 23 23 C 1.47906 * 110.99516 * 242.60298 * 2 1 3 24 24 H 1.08993 * 109.47299 * 177.39910 * 1 2 3 25 25 H 1.09007 * 109.46714 * 297.39836 * 1 2 3 26 26 H 1.08996 * 109.47049 * 57.39257 * 1 2 3 27 27 H 1.08996 * 110.67208 * 318.71454 * 3 2 1 28 28 H 1.09003 * 110.66990 * 81.68145 * 3 2 1 29 29 H 1.09000 * 110.72477 * 279.05929 * 4 3 2 30 30 H 1.08998 * 110.72180 * 155.77107 * 4 3 2 31 31 H 1.09005 * 108.70410 * 71.18393 * 8 7 5 32 32 H 1.09000 * 108.61008 * 313.10800 * 8 7 5 33 33 H 1.09001 * 108.78961 * 196.86528 * 9 8 7 34 34 H 1.09004 * 108.78826 * 78.65690 * 9 8 7 35 35 H 1.09001 * 109.57462 * 331.95040 * 10 9 8 36 36 H 1.08998 * 109.57750 * 211.56979 * 10 9 8 37 37 H 1.09003 * 109.04366 * 162.17584 * 11 10 9 38 38 H 1.09000 * 109.04137 * 43.30115 * 11 10 9 39 39 H 0.96994 * 119.99634 * 355.10805 * 17 16 14 40 40 H 1.08996 * 109.79931 * 101.69718 * 22 7 5 41 41 H 1.08997 * 109.63480 * 341.08690 * 22 7 5 42 42 H 1.08993 * 109.91877 * 26.49247 * 23 2 1 43 43 H 1.08998 * 109.91708 * 265.19466 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2105 -0.5227 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 7 4.4419 -0.8151 -1.5405 8 6 4.4951 -1.5212 -0.2415 9 6 5.8203 -2.2682 -0.0075 10 6 6.3075 -2.9960 -1.2318 11 6 7.2481 -2.0626 -2.0264 12 6 6.5021 -1.0633 -2.7836 13 1 5.8321 -1.5738 -3.4754 14 6 7.4740 -0.2274 -3.5758 15 1 8.4868 -0.0980 -3.2239 16 6 7.0702 0.3722 -4.7498 17 7 5.8067 0.3249 -5.1117 18 14 8.3177 1.2519 -5.8265 19 1 7.6349 1.8079 -7.0222 20 1 8.9445 2.3564 -5.0567 21 1 9.3655 0.2914 -6.2562 22 6 5.6704 -0.1357 -1.8787 23 6 1.9989 -0.6354 -1.2260 24 1 -0.3633 -1.0265 -0.0466 25 1 -0.3633 0.4729 0.9125 26 1 -0.3633 0.5538 -0.8657 27 1 1.4238 2.0204 -0.6729 28 1 2.0015 1.7987 1.0091 29 1 4.1116 0.8834 0.2787 30 1 3.8123 2.1351 -0.9716 31 1 3.6766 -2.2398 -0.2005 32 1 4.3592 -0.7916 0.5568 33 1 5.6792 -2.9899 0.7971 34 1 6.5797 -1.5486 0.2986 35 1 5.4569 -3.2734 -1.8544 36 1 6.8505 -3.8923 -0.9319 37 1 7.8428 -2.6608 -2.7168 38 1 7.9166 -1.5553 -1.3307 39 1 5.1720 -0.1913 -4.5905 40 1 6.2296 0.0898 -0.9707 41 1 5.4435 0.7886 -2.4099 42 1 1.2757 -0.5403 -2.0359 43 1 2.2121 -1.6874 -1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:22 Heat of formation + Delta-G solvation = 5.127141 kcal Electronic energy + Delta-G solvation = -20259.681722 eV Core-core repulsion = 17532.289747 eV Total energy + Delta-G solvation = -2727.391975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.67836 -37.50606 -34.21983 -33.19940 -30.59854 -30.39266 -28.43244 -25.99843 -24.91975 -24.19216 -23.05087 -21.17350 -20.52074 -19.38530 -18.31246 -16.79507 -16.01318 -15.93979 -14.82662 -14.39810 -14.32782 -13.89685 -13.67724 -13.28657 -13.13361 -12.96240 -12.39274 -12.16099 -11.85285 -11.82406 -11.57118 -11.41690 -11.06550 -10.94220 -10.83985 -10.62913 -10.50715 -10.33898 -10.17434 -10.05848 -9.95121 -9.35760 -9.12126 -8.38434 -8.37198 -8.17967 -7.33875 -6.24845 -3.95222 3.47070 3.49010 3.67420 4.09430 4.48933 4.60745 4.86024 4.97855 5.21908 5.35252 5.37377 5.43465 5.48804 5.49607 5.54162 5.63375 5.76362 5.78423 5.86152 5.96987 6.02274 6.08483 6.19911 6.24095 6.32947 6.37603 6.40825 6.50063 6.61569 6.65939 6.75818 6.93493 6.95523 7.05634 7.07935 7.33154 7.61020 7.83524 7.95084 8.10271 8.44681 8.58576 9.02323 9.78096 11.15344 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.006975 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.619064 B = 4013.162731 C = 4847.321962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.037 3.963 4 C -0.157 4.157 5 C 0.083 3.917 6 H 0.089 0.911 7 N -0.533 5.533 8 C 0.064 3.936 9 C -0.114 4.114 10 C -0.115 4.115 11 C -0.088 4.088 12 C 0.032 3.968 13 H 0.038 0.962 14 C -0.597 4.597 15 H 0.044 0.956 16 C 0.021 3.979 17 N -0.913 5.913 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.079 3.921 23 C 0.037 3.963 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.276 0.724 40 H 0.017 0.983 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -1.099 10.020 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.247 5.247 3 C -0.091 4.091 4 C -0.197 4.197 5 C -0.027 4.027 6 H 0.107 0.893 7 N -0.257 5.257 8 C -0.063 4.063 9 C -0.151 4.151 10 C -0.153 4.153 11 C -0.126 4.126 12 C 0.013 3.987 13 H 0.056 0.944 14 C -0.636 4.636 15 H 0.062 0.938 16 C -0.183 4.183 17 N -0.549 5.549 18 Si 0.891 3.109 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.048 4.048 23 C -0.091 4.091 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.235 -0.833 8.754 11.388 hybrid contribution -0.325 0.263 1.337 1.401 sum -7.560 -0.570 10.092 12.622 Atomic orbital electron populations 1.22485 0.88400 1.01775 1.00502 1.64766 1.07606 1.14942 1.37427 1.23165 0.95480 0.89887 1.00531 1.23195 0.96201 1.00300 1.00010 1.22620 0.90788 0.90930 0.98360 0.89265 1.61201 1.04261 1.30342 1.29900 1.22339 0.97055 0.96863 0.90078 1.21340 0.96910 0.98756 0.98130 1.21386 0.99841 0.97409 0.96678 1.20556 0.97199 0.96984 0.97821 1.17774 0.94344 0.92965 0.93616 0.94351 1.22052 0.98001 1.34935 1.08612 0.93804 1.25701 0.99120 0.96898 0.96629 1.70738 1.02302 1.38244 1.43650 0.83648 0.74857 0.76077 0.76290 1.20979 1.21747 1.21579 1.22177 0.87648 0.97800 0.97203 1.23047 0.95417 1.00455 0.90151 0.91498 0.91668 0.95548 0.93909 0.90603 0.90557 0.91091 0.91899 0.95103 0.92874 0.92832 0.91527 0.93869 0.93531 0.94411 0.91235 0.96440 0.92009 0.93740 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.75 16 2 N -0.52 -7.12 5.55 -238.72 -1.33 -8.44 16 3 C 0.04 0.50 6.56 -1.90 -0.01 0.48 16 4 C -0.16 -2.44 5.68 -24.87 -0.14 -2.58 16 5 C 0.08 1.43 2.89 -66.35 -0.19 1.24 16 6 H 0.09 1.73 8.05 -51.93 -0.42 1.31 16 7 N -0.53 -10.19 4.02 -224.95 -0.90 -11.10 16 8 C 0.06 1.07 4.60 -2.77 -0.01 1.06 16 9 C -0.11 -1.88 5.27 -27.49 -0.14 -2.02 16 10 C -0.12 -2.09 5.63 -27.17 -0.15 -2.24 16 11 C -0.09 -1.90 4.49 -29.30 -0.13 -2.04 16 12 C 0.03 0.80 1.41 -94.63 -0.13 0.66 16 13 H 0.04 1.05 6.84 -51.93 -0.36 0.70 16 14 C -0.60 -16.58 8.06 -34.44 -0.28 -16.85 16 15 H 0.04 1.23 7.81 -52.49 -0.41 0.82 16 16 C 0.02 0.60 5.44 -17.82 -0.10 0.50 16 17 N -0.91 -27.09 13.62 55.43 0.76 -26.33 16 18 Si 1.06 25.19 29.91 -169.99 -5.08 20.10 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.08 1.77 3.88 -4.65 -0.02 1.75 16 23 C 0.04 0.56 5.89 -2.75 -0.02 0.54 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.03 0.28 8.00 -51.93 -0.42 -0.13 16 27 H 0.04 0.55 7.96 -51.93 -0.41 0.13 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.24 5.98 -51.93 -0.31 0.93 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 32 H 0.03 0.52 5.83 -51.93 -0.30 0.21 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.93 6.65 -51.93 -0.35 0.58 16 35 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 38 H 0.04 0.81 7.59 -51.93 -0.39 0.42 16 39 H 0.28 8.18 6.57 -40.82 -0.27 7.91 16 40 H 0.02 0.39 6.78 -51.93 -0.35 0.03 16 41 H 0.06 1.54 7.30 -51.93 -0.38 1.16 16 42 H 0.04 0.65 7.73 -51.93 -0.40 0.25 16 43 H 0.09 1.40 6.00 -51.93 -0.31 1.09 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -28.59 313.86 -10.16 -38.75 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.57 Total: 1.02 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.77 Total: -18.73 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -1.47 Total: -45.87 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.59 -10.16 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.877 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds