Wall clock time and date at job start Mon Mar 30 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.48524 * 111.00235 * 2 1 4 4 C 1.54940 * 103.22959 * 200.27816 * 3 2 1 5 5 C 1.54600 * 102.91747 * 37.41853 * 4 3 2 6 6 H 1.08993 * 110.39590 * 96.99838 * 5 4 3 7 7 N 1.46897 * 110.30775 * 219.12976 * 5 4 3 8 8 C 1.47948 * 111.00614 * 63.20855 * 7 5 4 9 9 C 1.53911 * 113.33516 * 192.17632 * 8 7 5 10 10 C 1.50529 * 112.93578 * 317.76238 * 9 8 7 11 11 C 1.54513 * 108.85530 * 91.75944 * 10 9 8 12 12 C 1.45884 * 111.68198 * 282.73996 * 11 10 9 13 13 H 1.08997 * 108.84371 * 300.78171 * 12 11 10 14 14 C 1.50692 * 108.84637 * 182.31346 * 12 11 10 15 15 H 1.07999 * 120.00279 * 332.66705 * 14 12 11 16 16 C 1.37877 * 119.99950 * 152.66677 * 14 12 11 17 17 N 1.31516 * 120.00124 * 6.65982 * 16 14 12 18 18 Si 1.86803 * 120.00303 * 186.65736 * 16 14 12 19 19 H 1.48494 * 109.47401 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.46904 * 300.00122 * 18 16 14 21 21 H 1.48496 * 109.47311 * 59.99773 * 18 16 14 22 22 C 1.44397 * 111.05113 * 295.87615 * 7 5 4 23 23 C 1.47906 * 110.99516 * 242.60298 * 2 1 3 24 24 H 1.08993 * 109.47299 * 177.39910 * 1 2 3 25 25 H 1.09007 * 109.46714 * 297.39836 * 1 2 3 26 26 H 1.08996 * 109.47049 * 57.39257 * 1 2 3 27 27 H 1.08996 * 110.67208 * 318.71454 * 3 2 1 28 28 H 1.09003 * 110.66990 * 81.68145 * 3 2 1 29 29 H 1.09000 * 110.72477 * 279.05929 * 4 3 2 30 30 H 1.08998 * 110.72180 * 155.77107 * 4 3 2 31 31 H 1.09005 * 108.70410 * 71.18393 * 8 7 5 32 32 H 1.09000 * 108.61008 * 313.10800 * 8 7 5 33 33 H 1.09001 * 108.78961 * 196.86528 * 9 8 7 34 34 H 1.09004 * 108.78826 * 78.65690 * 9 8 7 35 35 H 1.09001 * 109.57462 * 331.95040 * 10 9 8 36 36 H 1.08998 * 109.57750 * 211.56979 * 10 9 8 37 37 H 1.09003 * 109.04366 * 162.17584 * 11 10 9 38 38 H 1.09000 * 109.04137 * 43.30115 * 11 10 9 39 39 H 0.96994 * 119.99634 * 355.10805 * 17 16 14 40 40 H 1.08996 * 109.79931 * 101.69718 * 22 7 5 41 41 H 1.08997 * 109.63480 * 341.08690 * 22 7 5 42 42 H 1.08993 * 109.91877 * 26.49247 * 23 2 1 43 43 H 1.08998 * 109.91708 * 265.19466 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2105 -0.5227 5 6 3.2982 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 7 4.4419 -0.8151 -1.5405 8 6 4.4951 -1.5212 -0.2415 9 6 5.8203 -2.2682 -0.0075 10 6 6.3075 -2.9960 -1.2318 11 6 7.2481 -2.0626 -2.0264 12 6 6.5021 -1.0633 -2.7836 13 1 5.8321 -1.5738 -3.4754 14 6 7.4740 -0.2274 -3.5758 15 1 8.4868 -0.0980 -3.2239 16 6 7.0702 0.3722 -4.7498 17 7 5.8067 0.3249 -5.1117 18 14 8.3177 1.2519 -5.8265 19 1 7.6349 1.8079 -7.0222 20 1 8.9445 2.3564 -5.0567 21 1 9.3655 0.2914 -6.2562 22 6 5.6704 -0.1357 -1.8787 23 6 1.9989 -0.6354 -1.2260 24 1 -0.3633 -1.0265 -0.0466 25 1 -0.3633 0.4729 0.9125 26 1 -0.3633 0.5538 -0.8657 27 1 1.4238 2.0204 -0.6729 28 1 2.0015 1.7987 1.0091 29 1 4.1116 0.8834 0.2787 30 1 3.8123 2.1351 -0.9716 31 1 3.6766 -2.2398 -0.2005 32 1 4.3592 -0.7916 0.5568 33 1 5.6792 -2.9899 0.7971 34 1 6.5797 -1.5486 0.2986 35 1 5.4569 -3.2734 -1.8544 36 1 6.8505 -3.8923 -0.9319 37 1 7.8428 -2.6608 -2.7168 38 1 7.9166 -1.5553 -1.3307 39 1 5.1720 -0.1913 -4.5905 40 1 6.2296 0.0898 -0.9707 41 1 5.4435 0.7886 -2.4099 42 1 1.2757 -0.5403 -2.0359 43 1 2.2121 -1.6874 -1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:21 Heat of formation + Delta-G solvation = -13.382294 kcal Electronic energy + Delta-G solvation = -20260.484351 eV Core-core repulsion = 17532.289747 eV Total energy + Delta-G solvation = -2728.194604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07519 -38.96733 -35.86224 -34.91445 -32.33124 -31.75460 -29.71253 -27.61812 -26.28840 -25.76445 -24.84940 -22.41773 -21.87410 -21.14532 -19.80785 -18.81749 -17.40214 -17.27563 -16.26786 -15.80950 -15.71075 -15.53975 -15.17722 -14.93881 -14.50740 -14.37251 -13.93945 -13.68127 -13.37114 -13.16896 -12.83747 -12.78577 -12.65709 -12.52375 -12.24342 -12.14612 -12.07662 -11.94863 -11.79332 -11.65019 -11.45431 -11.07901 -11.01932 -10.49494 -10.24345 -9.45402 -8.89920 -8.51821 -6.22464 1.52777 1.60373 1.79374 2.60068 2.94689 3.09323 3.32794 3.63904 3.77292 3.91874 4.00224 4.14458 4.24476 4.30410 4.33091 4.37785 4.51657 4.53840 4.61336 4.65583 4.67771 4.75898 4.83574 4.87768 4.91805 4.92943 4.99906 5.03947 5.11266 5.12829 5.20024 5.27960 5.49615 5.54792 5.67786 5.80688 5.95053 6.03234 6.15847 6.33905 6.41461 6.56720 6.79133 7.58440 8.87995 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.006975 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.619064 B = 4013.162731 C = 4847.321962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.527 5.527 3 C 0.045 3.955 4 C -0.152 4.152 5 C 0.079 3.921 6 H 0.056 0.944 7 N -0.545 5.545 8 C 0.067 3.933 9 C -0.112 4.112 10 C -0.104 4.104 11 C -0.088 4.088 12 C 0.034 3.966 13 H 0.003 0.997 14 C -0.612 4.612 15 H 0.037 0.963 16 C -0.028 4.028 17 N -0.936 5.936 18 Si 1.107 2.893 19 H -0.286 1.286 20 H -0.275 1.275 21 H -0.274 1.274 22 C 0.106 3.894 23 C 0.048 3.952 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.017 0.983 41 H 0.025 0.975 42 H 0.046 0.954 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 -1.499 11.870 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.251 5.251 3 C -0.083 4.083 4 C -0.192 4.192 5 C -0.031 4.031 6 H 0.074 0.926 7 N -0.269 5.269 8 C -0.060 4.060 9 C -0.150 4.150 10 C -0.142 4.142 11 C -0.125 4.125 12 C 0.015 3.985 13 H 0.021 0.979 14 C -0.651 4.651 15 H 0.056 0.944 16 C -0.227 4.227 17 N -0.573 5.573 18 Si 0.931 3.069 19 H -0.212 1.212 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.022 4.022 23 C -0.080 4.080 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.741 -1.245 10.634 13.212 hybrid contribution -0.185 0.363 0.771 0.872 sum -7.926 -0.882 11.405 13.917 Atomic orbital electron populations 1.22571 0.86486 1.02674 1.01484 1.64793 1.09391 1.14848 1.36102 1.23147 0.93507 0.90041 1.01578 1.23095 0.98045 0.98993 0.99065 1.22551 0.91395 0.91681 0.97432 0.92613 1.61036 1.03249 1.30635 1.31985 1.22393 0.97968 0.96960 0.88634 1.21351 0.96227 0.99162 0.98238 1.21273 0.98715 0.97634 0.96590 1.20476 0.97526 0.96813 0.97709 1.17749 0.93741 0.93440 0.93607 0.97870 1.22446 0.98290 1.35033 1.09316 0.94438 1.27057 0.99929 0.97530 0.98200 1.70850 1.03019 1.39436 1.44008 0.83053 0.73187 0.75887 0.74807 1.21180 1.20027 1.19915 1.21607 0.88891 0.95716 0.96014 1.22878 0.94022 1.00002 0.91060 0.90641 0.89903 0.95375 0.93371 0.88657 0.90945 0.92178 0.90531 0.94479 0.89334 0.93623 0.92784 0.91123 0.94822 0.94370 0.92603 0.96461 0.95619 0.93561 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 127.69 1.20 1.51 16 2 N -0.53 -13.11 5.55 -909.17 -5.05 -18.16 16 3 C 0.05 1.11 6.56 86.65 0.57 1.68 16 4 C -0.15 -4.69 5.68 31.80 0.18 -4.51 16 5 C 0.08 2.79 2.89 45.80 0.13 2.92 16 6 H 0.06 2.31 8.05 -2.39 -0.02 2.29 16 7 N -0.55 -21.14 4.02 -865.61 -3.48 -24.61 16 8 C 0.07 2.14 4.60 86.41 0.40 2.53 16 9 C -0.11 -3.43 5.27 30.10 0.16 -3.27 16 10 C -0.10 -3.62 5.63 30.31 0.17 -3.45 16 11 C -0.09 -3.81 4.49 28.93 0.13 -3.68 16 12 C 0.03 1.74 1.41 -13.39 -0.02 1.72 16 13 H 0.00 0.18 6.84 -2.39 -0.02 0.16 16 14 C -0.61 -35.00 8.06 25.60 0.21 -34.79 16 15 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 16 C -0.03 -1.63 5.44 84.65 0.46 -1.17 16 17 N -0.94 -57.68 13.62 21.45 0.29 -57.39 16 18 Si 1.11 51.32 29.91 68.60 2.05 53.38 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.11 4.90 3.88 87.11 0.34 5.24 16 23 C 0.05 1.41 5.89 86.45 0.51 1.92 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.03 0.54 8.00 -2.39 -0.02 0.52 16 27 H 0.05 1.14 7.96 -2.39 -0.02 1.12 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.29 5.98 -2.39 -0.01 2.27 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 2.27 6.39 -2.38 -0.02 2.26 16 32 H 0.04 1.16 5.83 -2.39 -0.01 1.15 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.04 1.48 6.65 -2.39 -0.02 1.46 16 35 H 0.05 2.02 7.78 -2.39 -0.02 2.00 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.50 8.12 -2.39 -0.02 1.49 16 38 H 0.04 1.63 7.59 -2.39 -0.02 1.62 16 39 H 0.26 16.49 6.57 -92.71 -0.61 15.88 16 40 H 0.02 0.78 6.78 -2.39 -0.02 0.76 16 41 H 0.03 1.34 7.30 -2.39 -0.02 1.32 16 42 H 0.05 1.32 7.73 -2.39 -0.02 1.30 16 43 H 0.09 2.61 6.00 -2.39 -0.01 2.60 16 Total: -1.00 -63.48 313.86 -0.63 -64.12 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.12 Total: 16.04 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 4.43 Total: -33.37 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -8.23 Total: -100.16 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.38 kcal Total: -63.48 -0.63 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.733 kcal (2) G-P(sol) polarization free energy of solvation -63.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds