Wall clock time and date at job start Mon Mar 30 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48556 * 111.00506 * 2 1 4 4 C 1.54370 * 104.59624 * 200.95870 * 3 2 1 5 5 C 1.54254 * 105.06315 * 23.85465 * 4 3 2 6 6 H 1.09003 * 110.32698 * 241.00080 * 5 4 3 7 7 N 1.46901 * 110.32980 * 118.89480 * 5 4 3 8 8 C 1.44296 * 110.99917 * 52.57613 * 7 5 4 9 9 C 1.53990 * 108.33265 * 221.35360 * 8 7 5 10 10 C 1.45883 * 112.65213 * 278.62528 * 9 8 7 11 11 C 1.54516 * 111.67990 * 61.49100 * 10 9 8 12 12 C 1.50535 * 108.85768 * 282.73742 * 11 10 9 13 13 H 1.09001 * 108.78974 * 330.87345 * 12 11 10 14 14 C 1.50696 * 108.79064 * 212.65280 * 12 11 10 15 15 H 1.07997 * 120.00205 * 334.81313 * 14 12 11 16 16 C 1.37886 * 119.99754 * 154.81580 * 14 12 11 17 17 N 1.31518 * 119.99762 * 185.31215 * 16 14 12 18 18 Si 1.86795 * 119.99868 * 5.31093 * 16 14 12 19 19 H 1.48502 * 109.47225 * 84.82110 * 18 16 14 20 20 H 1.48502 * 109.46991 * 204.81919 * 18 16 14 21 21 H 1.48494 * 109.47377 * 324.81881 * 18 16 14 22 22 C 1.47942 * 111.00233 * 180.02562 * 7 5 4 23 23 C 1.48558 * 110.99892 * 244.57859 * 2 1 3 24 24 H 1.09005 * 109.47145 * 59.86660 * 1 2 3 25 25 H 1.08997 * 109.47949 * 179.87162 * 1 2 3 26 26 H 1.09007 * 109.47143 * 299.87809 * 1 2 3 27 27 H 1.09005 * 110.40942 * 82.17907 * 3 2 1 28 28 H 1.09004 * 110.41260 * 319.74232 * 3 2 1 29 29 H 1.09001 * 110.33078 * 264.95258 * 4 3 2 30 30 H 1.09003 * 110.41043 * 142.79192 * 4 3 2 31 31 H 1.09002 * 109.69695 * 101.64319 * 8 7 5 32 32 H 1.09003 * 109.69272 * 341.06032 * 8 7 5 33 33 H 1.08992 * 108.84864 * 157.80380 * 9 8 7 34 34 H 1.08997 * 108.84505 * 39.43736 * 9 8 7 35 35 H 1.08996 * 109.03691 * 182.05730 * 10 9 8 36 36 H 1.09002 * 109.03841 * 301.00088 * 10 9 8 37 37 H 1.09004 * 109.57336 * 42.55502 * 11 10 9 38 38 H 1.09007 * 109.57022 * 162.80142 * 11 10 9 39 39 H 0.96998 * 119.99754 * 179.97438 * 17 16 14 40 40 H 1.08998 * 108.71149 * 71.18468 * 22 7 5 41 41 H 1.08994 * 108.71275 * 313.16798 * 22 7 5 42 42 H 1.09002 * 110.41276 * 40.26426 * 23 2 1 43 43 H 1.09001 * 110.41308 * 277.82319 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3868 0.0000 4 6 3.4432 1.2500 -0.5344 5 6 3.4432 -0.0540 -1.3585 6 1 4.1496 -0.7688 -0.9362 7 7 3.7807 0.2281 -2.7601 8 6 5.0065 0.9836 -2.8548 9 6 4.8264 2.0651 -3.9361 10 6 5.0230 1.5483 -5.2860 11 6 3.9966 0.4458 -5.6303 12 6 4.4141 -0.8348 -4.9580 13 1 5.4994 -0.8403 -4.8564 14 6 4.0051 -1.9954 -5.8278 15 1 3.1814 -1.8889 -6.5181 16 6 4.6826 -3.1933 -5.7423 17 7 4.3954 -4.1718 -6.5728 18 14 6.0081 -3.4262 -4.4470 19 1 5.3820 -3.8479 -3.1681 20 1 6.9633 -4.4699 -4.8983 21 1 6.7330 -2.1461 -4.2447 22 6 3.7844 -1.0133 -3.5648 23 6 2.0013 -0.5954 -1.2526 24 1 -0.3634 0.5159 -0.8888 25 1 -0.3635 -1.0276 -0.0023 26 1 -0.3634 0.5120 0.8911 27 1 2.0079 1.7915 1.0121 28 1 1.4099 2.0212 -0.6602 29 1 4.1484 1.1747 0.2934 30 1 3.6955 2.0992 -1.1695 31 1 5.8262 0.3206 -3.1315 32 1 5.2224 1.4551 -1.8961 33 1 5.5449 2.8649 -3.7572 34 1 3.8195 2.4754 -3.8594 35 1 4.9186 2.3664 -5.9987 36 1 6.0282 1.1340 -5.3653 37 1 3.0100 0.7410 -5.2731 38 1 3.9655 0.3002 -6.7101 39 1 4.8722 -5.0144 -6.5128 40 1 2.7562 -1.3542 -3.6865 41 1 4.3421 -1.7784 -3.0248 42 1 1.4098 -0.2713 -2.1089 43 1 2.0077 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:25 Heat of formation + Delta-G solvation = 8.335345 kcal Electronic energy + Delta-G solvation = -20190.916090 eV Core-core repulsion = 17463.663234 eV Total energy + Delta-G solvation = -2727.252856 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58579 -37.65507 -34.21983 -33.20380 -31.31689 -30.62469 -28.52172 -26.03058 -25.56466 -24.27122 -23.04980 -20.97865 -20.15723 -19.65450 -18.58042 -16.90102 -16.24538 -15.87322 -15.03509 -14.56723 -14.44714 -14.01510 -13.77595 -13.35193 -13.07382 -13.01757 -12.67181 -12.53203 -12.33423 -11.66177 -11.58892 -11.39656 -11.22014 -11.11248 -11.00404 -10.84405 -10.52362 -10.45863 -10.28645 -10.04830 -9.70131 -9.55132 -9.23062 -8.94310 -8.55063 -8.46848 -7.62690 -6.09217 -4.07591 3.25254 3.33820 3.34214 3.98734 4.38896 4.52299 4.75426 4.77640 5.16090 5.23596 5.34055 5.34858 5.44636 5.47914 5.50018 5.58206 5.71389 5.77613 5.83082 5.93817 5.98596 6.05867 6.08132 6.10473 6.17931 6.23249 6.35783 6.42948 6.49241 6.56773 6.66745 6.76070 6.83280 7.01762 7.02672 7.11411 7.34598 7.54527 7.67972 7.80896 7.92608 8.54453 8.97952 9.54122 11.04092 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.007602 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.729605 B = 3682.191756 C = 4300.084046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.037 3.963 4 C -0.122 4.122 5 C 0.082 3.918 6 H 0.044 0.956 7 N -0.544 5.544 8 C 0.059 3.941 9 C -0.104 4.104 10 C -0.120 4.120 11 C -0.088 4.088 12 C 0.009 3.991 13 H 0.030 0.970 14 C -0.507 4.507 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.900 5.900 18 Si 0.872 3.128 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.265 1.265 22 C 0.067 3.933 23 C 0.041 3.959 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.263 0.737 40 H 0.070 0.930 41 H 0.014 0.986 42 H 0.061 0.939 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 11.700 11.733 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.091 4.091 4 C -0.160 4.160 5 C -0.027 4.027 6 H 0.062 0.938 7 N -0.270 5.270 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.158 4.158 11 C -0.125 4.125 12 C -0.011 4.011 13 H 0.049 0.951 14 C -0.545 4.545 15 H 0.093 0.907 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.701 3.299 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.190 1.190 22 C -0.059 4.059 23 C -0.087 4.087 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.564 11.471 11.965 16.773 hybrid contribution 1.030 -0.530 0.327 1.203 sum -1.534 10.941 12.292 16.527 Atomic orbital electron populations 1.22477 0.88234 1.02129 1.00547 1.65363 1.08062 1.15330 1.35633 1.23049 0.95415 0.90276 1.00381 1.22500 0.96291 0.98312 0.98898 1.22311 0.95862 0.95615 0.88889 0.93826 1.61037 1.34025 1.24253 1.07657 1.21807 0.91207 0.95758 0.98184 1.20434 1.01405 0.96988 0.95371 1.20634 1.00203 0.98818 0.96110 1.21255 0.97397 0.93978 0.99909 1.19088 0.96172 0.95033 0.90762 0.95148 1.21118 1.17688 0.94825 1.20911 0.90733 1.25065 0.96645 0.96042 0.95246 1.69904 1.42459 1.04760 1.36681 0.86995 0.82497 0.77932 0.82509 1.20310 1.21719 1.19011 1.23065 1.01365 0.86831 0.94682 1.23161 0.94965 0.99712 0.90841 0.95216 0.91342 0.91655 0.90683 0.93684 0.91517 0.89908 0.94115 0.91984 0.93555 0.91765 0.93481 0.93090 0.92706 0.92449 0.92692 0.91174 0.96812 0.92072 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.53 60.06 0.57 0.74 16 2 N -0.52 -6.98 5.66 -238.23 -1.35 -8.32 16 3 C 0.04 0.44 6.49 -2.19 -0.01 0.43 16 4 C -0.12 -1.54 5.60 -25.36 -0.14 -1.68 16 5 C 0.08 1.29 2.77 -66.33 -0.18 1.10 16 6 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 7 N -0.54 -9.48 3.84 -224.99 -0.86 -10.34 16 8 C 0.06 0.95 4.73 -4.70 -0.02 0.93 16 9 C -0.10 -1.57 5.38 -29.58 -0.16 -1.72 16 10 C -0.12 -2.04 5.35 -29.30 -0.16 -2.20 16 11 C -0.09 -1.78 5.11 -27.17 -0.14 -1.92 16 12 C 0.01 0.20 1.23 -92.52 -0.11 0.09 16 13 H 0.03 0.74 4.30 -51.93 -0.22 0.51 16 14 C -0.51 -14.00 8.47 -34.44 -0.29 -14.29 16 15 H 0.07 2.24 8.04 -52.49 -0.42 1.81 16 16 C 0.07 2.05 5.47 -17.81 -0.10 1.96 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 18 Si 0.87 21.74 25.52 -169.99 -4.34 17.40 16 19 H -0.28 -6.81 7.10 56.52 0.40 -6.41 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.37 6.16 56.52 0.35 -6.02 16 22 C 0.07 1.41 4.11 -2.76 -0.01 1.40 16 23 C 0.04 0.63 5.21 -2.18 -0.01 0.62 16 24 H 0.03 0.33 7.97 -51.93 -0.41 -0.08 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.54 7.97 -51.93 -0.41 0.12 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.03 6.48 -51.93 -0.34 0.69 16 31 H 0.04 0.74 6.79 -51.93 -0.35 0.39 16 32 H 0.06 0.86 5.71 -51.93 -0.30 0.57 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.90 7.58 -51.93 -0.39 0.51 16 37 H 0.05 1.09 7.78 -51.93 -0.40 0.69 16 38 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 40 H 0.07 1.55 7.39 -51.93 -0.38 1.16 16 41 H 0.01 0.31 5.79 -51.93 -0.30 0.01 16 42 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -29.02 311.50 -9.58 -38.60 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.73 Total: -0.86 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.77 Total: -14.55 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.44 Total: -45.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.34 Total: 17.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.02 -9.58 -38.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.940 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds