Wall clock time and date at job start Mon Mar 30 2020 04:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48556 * 111.00506 * 2 1 4 4 C 1.54370 * 104.59624 * 200.95870 * 3 2 1 5 5 C 1.54254 * 105.06315 * 23.85465 * 4 3 2 6 6 H 1.09003 * 110.32698 * 241.00080 * 5 4 3 7 7 N 1.46901 * 110.32980 * 118.89480 * 5 4 3 8 8 C 1.44296 * 110.99917 * 52.57613 * 7 5 4 9 9 C 1.53990 * 108.33265 * 221.35360 * 8 7 5 10 10 C 1.45883 * 112.65213 * 278.62528 * 9 8 7 11 11 C 1.54516 * 111.67990 * 61.49100 * 10 9 8 12 12 C 1.50535 * 108.85768 * 282.73742 * 11 10 9 13 13 H 1.09001 * 108.78974 * 330.87345 * 12 11 10 14 14 C 1.50696 * 108.79064 * 212.65280 * 12 11 10 15 15 H 1.07997 * 120.00205 * 334.81313 * 14 12 11 16 16 C 1.37886 * 119.99754 * 154.81580 * 14 12 11 17 17 N 1.31518 * 119.99762 * 185.31215 * 16 14 12 18 18 Si 1.86795 * 119.99868 * 5.31093 * 16 14 12 19 19 H 1.48502 * 109.47225 * 84.82110 * 18 16 14 20 20 H 1.48502 * 109.46991 * 204.81919 * 18 16 14 21 21 H 1.48494 * 109.47377 * 324.81881 * 18 16 14 22 22 C 1.47942 * 111.00233 * 180.02562 * 7 5 4 23 23 C 1.48558 * 110.99892 * 244.57859 * 2 1 3 24 24 H 1.09005 * 109.47145 * 59.86660 * 1 2 3 25 25 H 1.08997 * 109.47949 * 179.87162 * 1 2 3 26 26 H 1.09007 * 109.47143 * 299.87809 * 1 2 3 27 27 H 1.09005 * 110.40942 * 82.17907 * 3 2 1 28 28 H 1.09004 * 110.41260 * 319.74232 * 3 2 1 29 29 H 1.09001 * 110.33078 * 264.95258 * 4 3 2 30 30 H 1.09003 * 110.41043 * 142.79192 * 4 3 2 31 31 H 1.09002 * 109.69695 * 101.64319 * 8 7 5 32 32 H 1.09003 * 109.69272 * 341.06032 * 8 7 5 33 33 H 1.08992 * 108.84864 * 157.80380 * 9 8 7 34 34 H 1.08997 * 108.84505 * 39.43736 * 9 8 7 35 35 H 1.08996 * 109.03691 * 182.05730 * 10 9 8 36 36 H 1.09002 * 109.03841 * 301.00088 * 10 9 8 37 37 H 1.09004 * 109.57336 * 42.55502 * 11 10 9 38 38 H 1.09007 * 109.57022 * 162.80142 * 11 10 9 39 39 H 0.96998 * 119.99754 * 179.97438 * 17 16 14 40 40 H 1.08998 * 108.71149 * 71.18468 * 22 7 5 41 41 H 1.08994 * 108.71275 * 313.16798 * 22 7 5 42 42 H 1.09002 * 110.41276 * 40.26426 * 23 2 1 43 43 H 1.09001 * 110.41308 * 277.82319 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0015 1.3868 0.0000 4 6 3.4432 1.2500 -0.5344 5 6 3.4432 -0.0540 -1.3585 6 1 4.1496 -0.7688 -0.9362 7 7 3.7807 0.2281 -2.7601 8 6 5.0065 0.9836 -2.8548 9 6 4.8264 2.0651 -3.9361 10 6 5.0230 1.5483 -5.2860 11 6 3.9966 0.4458 -5.6303 12 6 4.4141 -0.8348 -4.9580 13 1 5.4994 -0.8403 -4.8564 14 6 4.0051 -1.9954 -5.8278 15 1 3.1814 -1.8889 -6.5181 16 6 4.6826 -3.1933 -5.7423 17 7 4.3954 -4.1718 -6.5728 18 14 6.0081 -3.4262 -4.4470 19 1 5.3820 -3.8479 -3.1681 20 1 6.9633 -4.4699 -4.8983 21 1 6.7330 -2.1461 -4.2447 22 6 3.7844 -1.0133 -3.5648 23 6 2.0013 -0.5954 -1.2526 24 1 -0.3634 0.5159 -0.8888 25 1 -0.3635 -1.0276 -0.0023 26 1 -0.3634 0.5120 0.8911 27 1 2.0079 1.7915 1.0121 28 1 1.4099 2.0212 -0.6602 29 1 4.1484 1.1747 0.2934 30 1 3.6955 2.0992 -1.1695 31 1 5.8262 0.3206 -3.1315 32 1 5.2224 1.4551 -1.8961 33 1 5.5449 2.8649 -3.7572 34 1 3.8195 2.4754 -3.8594 35 1 4.9186 2.3664 -5.9987 36 1 6.0282 1.1340 -5.3653 37 1 3.0100 0.7410 -5.2731 38 1 3.9655 0.3002 -6.7101 39 1 4.8722 -5.0144 -6.5128 40 1 2.7562 -1.3542 -3.6865 41 1 4.3421 -1.7784 -3.0248 42 1 1.4098 -0.2713 -2.1089 43 1 2.0077 -1.6832 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:24 Heat of formation + Delta-G solvation = -11.774529 kcal Electronic energy + Delta-G solvation = -20191.788120 eV Core-core repulsion = 17463.663234 eV Total energy + Delta-G solvation = -2728.124886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.86671 -38.95719 -35.72716 -34.94483 -33.12116 -31.82902 -29.72109 -27.68657 -26.85866 -25.63608 -24.70162 -22.07477 -21.48603 -21.02667 -20.21913 -18.93735 -17.58213 -17.01568 -16.56049 -16.17793 -15.66659 -15.37194 -15.09934 -14.89651 -14.72281 -14.40779 -14.13824 -13.81573 -13.68485 -13.24846 -13.02248 -12.84018 -12.52964 -12.41322 -12.28915 -12.15081 -12.02265 -11.87071 -11.73010 -11.58637 -11.34246 -11.14343 -11.03868 -10.83672 -10.70983 -9.50337 -9.07538 -8.33550 -6.35636 1.25151 1.26162 1.35499 2.26973 2.77856 3.03782 3.33923 3.64423 3.72960 4.03322 4.10099 4.16420 4.20431 4.35595 4.38781 4.47923 4.52774 4.56436 4.64109 4.68437 4.73977 4.80445 4.84971 4.90705 4.95386 4.98211 4.99399 5.06090 5.15823 5.17676 5.27607 5.31648 5.49191 5.55930 5.58603 5.70150 5.77030 5.82057 6.03605 6.26289 6.34285 6.46797 6.75042 7.29180 8.83531 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020648 B = 0.007602 C = 0.006510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.729605 B = 3682.191756 C = 4300.084046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.039 3.961 4 C -0.113 4.113 5 C 0.077 3.923 6 H 0.032 0.968 7 N -0.540 5.540 8 C 0.054 3.946 9 C -0.100 4.100 10 C -0.113 4.113 11 C -0.086 4.086 12 C 0.014 3.986 13 H 0.024 0.976 14 C -0.510 4.510 15 H 0.034 0.966 16 C 0.017 3.983 17 N -0.947 5.947 18 Si 0.932 3.068 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.248 1.248 22 C 0.082 3.918 23 C 0.044 3.956 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.050 0.950 41 H -0.002 1.002 42 H 0.046 0.954 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 14.380 14.287 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.252 5.252 3 C -0.089 4.089 4 C -0.151 4.151 5 C -0.032 4.032 6 H 0.050 0.950 7 N -0.265 5.265 8 C -0.075 4.075 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.124 4.124 12 C -0.005 4.005 13 H 0.042 0.958 14 C -0.549 4.549 15 H 0.052 0.948 16 C -0.181 4.181 17 N -0.588 5.588 18 Si 0.758 3.242 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.172 1.172 22 C -0.045 4.045 23 C -0.085 4.085 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.016 0.984 42 H 0.064 0.936 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.668 14.184 14.532 20.375 hybrid contribution 0.647 -1.350 -0.515 1.583 sum -1.021 12.834 14.017 19.032 Atomic orbital electron populations 1.22534 0.87017 1.02402 1.01468 1.65374 1.09332 1.16457 1.34027 1.23125 0.94738 0.89327 1.01723 1.22482 0.97306 0.96456 0.98885 1.22420 0.95439 0.97420 0.87955 0.95010 1.61006 1.34981 1.21978 1.08495 1.21982 0.89594 0.95596 1.00278 1.20409 1.02735 0.97254 0.93435 1.20578 0.98175 0.98028 0.98249 1.21174 0.98785 0.94161 0.98291 1.19012 0.95670 0.94478 0.91335 0.95802 1.21415 1.16192 0.96607 1.20676 0.94767 1.25846 0.99213 0.95728 0.97285 1.70047 1.44335 1.05515 1.38877 0.86013 0.79841 0.78548 0.79817 1.19669 1.21368 1.17230 1.22598 0.99541 0.88383 0.93987 1.23027 0.95040 0.98959 0.91439 0.95404 0.91537 0.89513 0.88462 0.93472 0.89905 0.88974 0.96199 0.88896 0.90141 0.91298 0.91181 0.93842 0.92643 0.94526 0.92585 0.93098 0.98374 0.93560 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.53 127.69 1.22 1.51 16 2 N -0.53 -13.07 5.66 -907.64 -5.14 -18.21 16 3 C 0.04 0.79 6.49 86.45 0.56 1.35 16 4 C -0.11 -2.44 5.60 31.48 0.18 -2.27 16 5 C 0.08 2.25 2.77 45.81 0.13 2.38 16 6 H 0.03 1.02 8.08 -2.39 -0.02 1.00 16 7 N -0.54 -17.96 3.84 -865.74 -3.32 -21.28 16 8 C 0.05 1.56 4.73 87.12 0.41 1.98 16 9 C -0.10 -2.64 5.38 28.75 0.15 -2.49 16 10 C -0.11 -3.56 5.35 28.93 0.15 -3.40 16 11 C -0.09 -3.50 5.11 30.31 0.15 -3.34 16 12 C 0.01 0.67 1.23 -12.02 -0.01 0.65 16 13 H 0.02 1.15 4.30 -2.39 -0.01 1.14 16 14 C -0.51 -29.41 8.47 25.60 0.22 -29.19 16 15 H 0.03 2.19 8.04 -2.91 -0.02 2.16 16 16 C 0.02 0.98 5.47 84.66 0.46 1.44 16 17 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 18 Si 0.93 45.54 25.52 68.60 1.75 47.29 16 19 H -0.27 -12.91 7.10 99.48 0.71 -12.20 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.25 -11.35 6.16 99.48 0.61 -10.74 16 22 C 0.08 3.50 4.11 86.42 0.35 3.85 16 23 C 0.04 1.32 5.21 86.45 0.45 1.77 16 24 H 0.03 0.58 7.97 -2.38 -0.02 0.56 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.05 0.96 7.97 -2.38 -0.02 0.94 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.85 6.48 -2.39 -0.02 1.83 16 31 H 0.02 0.67 6.79 -2.39 -0.02 0.65 16 32 H 0.09 2.16 5.71 -2.39 -0.01 2.15 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.44 7.58 -2.39 -0.02 1.42 16 37 H 0.05 2.21 7.78 -2.38 -0.02 2.19 16 38 H 0.04 1.59 7.74 -2.38 -0.02 1.58 16 39 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.05 2.33 7.39 -2.39 -0.02 2.31 16 41 H 0.00 -0.09 5.79 -2.39 -0.01 -0.10 16 42 H 0.05 1.50 7.72 -2.39 -0.02 1.49 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.07 311.50 -1.12 -66.19 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.86 Total: 11.39 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.43 Total: -25.77 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -8.16 Total: -99.11 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.75 Total: 47.29 kcal Total: -65.07 -1.12 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.419 kcal (2) G-P(sol) polarization free energy of solvation -65.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds