Wall clock time and date at job start Mon Mar 30 2020 04:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00344 * 2 1 4 4 C 1.54379 * 104.69842 * 159.09785 * 3 2 1 5 5 C 1.54257 * 105.06256 * 336.08765 * 4 3 2 6 6 H 1.08997 * 110.32124 * 118.89793 * 5 4 3 7 7 N 1.46900 * 110.32571 * 241.10637 * 5 4 3 8 8 C 1.44274 * 111.00137 * 58.01349 * 7 5 4 9 9 C 1.54066 * 111.98276 * 219.31197 * 8 7 5 10 10 C 1.54288 * 112.28753 * 318.91595 * 9 8 7 11 11 C 1.50459 * 113.03591 * 318.30253 * 10 9 8 12 12 C 1.54509 * 108.85285 * 92.15465 * 11 10 9 13 13 H 1.09005 * 108.99465 * 43.31579 * 12 11 10 14 14 C 1.50700 * 109.05366 * 162.26205 * 12 11 10 15 15 H 1.08000 * 119.99779 * 122.09243 * 14 12 11 16 16 C 1.37871 * 120.00438 * 302.08794 * 14 12 11 17 17 N 1.31521 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00422 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46833 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47271 * 119.99720 * 18 16 14 21 21 H 1.48500 * 109.47441 * 240.00358 * 18 16 14 22 22 C 1.45857 * 111.58874 * 282.81039 * 12 11 10 23 23 C 1.48856 * 111.13147 * 115.32120 * 2 1 3 24 24 H 1.09007 * 109.47069 * 59.87301 * 1 2 3 25 25 H 1.08995 * 109.47381 * 179.87413 * 1 2 3 26 26 H 1.09000 * 109.47076 * 299.87817 * 1 2 3 27 27 H 1.09002 * 110.41176 * 40.25880 * 3 2 1 28 28 H 1.09002 * 110.41204 * 277.93787 * 3 2 1 29 29 H 1.08998 * 110.32365 * 94.98307 * 4 3 2 30 30 H 1.09002 * 110.32581 * 217.19029 * 4 3 2 31 31 H 1.08996 * 108.97436 * 339.96137 * 8 7 5 32 32 H 1.08997 * 108.97592 * 98.66437 * 8 7 5 33 33 H 1.09006 * 108.91530 * 198.19372 * 9 8 7 34 34 H 1.09002 * 108.84371 * 79.59372 * 9 8 7 35 35 H 1.09010 * 108.76862 * 197.38788 * 10 9 8 36 36 H 1.08995 * 108.77431 * 79.22768 * 10 9 8 37 37 H 1.08999 * 109.57178 * 332.34186 * 11 10 9 38 38 H 1.09003 * 109.57363 * 211.96536 * 11 10 9 39 39 H 0.96996 * 120.00236 * 180.02562 * 17 16 14 40 40 H 1.08997 * 108.79623 * 300.43392 * 22 12 11 41 41 H 1.09008 * 108.70173 * 182.15371 * 22 12 11 42 42 H 1.09003 * 110.39541 * 82.21242 * 23 2 1 43 43 H 1.09004 * 110.49212 * 319.84370 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4441 1.2526 0.5328 5 6 3.4469 -0.0504 1.3584 6 1 4.1523 -0.7653 0.9350 7 7 3.7857 0.2339 2.7592 8 6 2.8571 1.1761 3.3349 9 6 3.5611 2.1890 4.2579 10 6 4.6433 1.5269 5.1358 11 6 4.2147 0.1982 5.6968 12 6 4.6648 -0.9203 4.7305 13 1 5.6828 -0.7147 4.3994 14 6 4.6418 -2.2390 5.4596 15 1 4.0370 -3.0520 5.0861 16 6 5.3929 -2.4076 6.6034 17 7 6.1292 -1.4174 7.0586 18 14 5.3650 -4.0424 7.5068 19 1 4.4651 -4.9856 6.7954 20 1 6.7377 -4.6070 7.5511 21 1 4.8701 -3.8345 8.8914 22 6 3.7927 -1.0054 3.5646 23 6 2.0056 -0.5938 1.2551 24 1 -0.3633 0.5158 -0.8889 25 1 -0.3634 -1.0276 -0.0023 26 1 -0.3633 0.5119 0.8911 27 1 1.4099 2.0212 0.6602 28 1 2.0060 1.7924 -1.0118 29 1 4.1482 1.1772 -0.2959 30 1 3.6943 2.1031 1.1669 31 1 2.3569 1.7166 2.5314 32 1 2.1102 0.6304 3.9115 33 1 2.8170 2.6541 4.9048 34 1 4.0267 2.9602 3.6442 35 1 4.8821 2.1961 5.9626 36 1 5.5412 1.3810 4.5354 37 1 3.1297 0.1779 5.7989 38 1 4.6781 0.0469 6.6718 39 1 6.6579 -1.5362 7.8631 40 1 2.7764 -1.2116 3.9004 41 1 4.1284 -1.8305 2.9364 42 1 2.0134 -1.6817 1.1875 43 1 1.4152 -0.2712 2.1127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:27 Heat of formation + Delta-G solvation = -7.068789 kcal Electronic energy + Delta-G solvation = -20147.000535 eV Core-core repulsion = 17419.079705 eV Total energy + Delta-G solvation = -2727.920830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21648 -38.74933 -35.77561 -34.40958 -32.89246 -31.71877 -29.45692 -27.82051 -26.69220 -25.60107 -24.92178 -22.46678 -21.54028 -20.85744 -19.78127 -18.52529 -17.48613 -17.00402 -16.58946 -15.92769 -15.65886 -15.50026 -15.13567 -14.72507 -14.62584 -14.11793 -13.99152 -13.62183 -13.21917 -13.04710 -12.88485 -12.77453 -12.67035 -12.43570 -12.28651 -12.24745 -12.18646 -12.02804 -11.68887 -11.50717 -11.31387 -11.14245 -10.89263 -10.55004 -10.30768 -9.52554 -9.10105 -8.04794 -6.20688 1.39973 1.42009 1.52735 2.42865 2.89854 3.20230 3.27623 3.70193 3.73290 4.00656 4.13056 4.20667 4.28920 4.36019 4.41629 4.50574 4.53745 4.53894 4.64206 4.69805 4.72436 4.82284 4.86748 4.95314 5.01052 5.01514 5.07564 5.13346 5.16070 5.27114 5.30680 5.52831 5.57387 5.70351 5.73512 5.80020 5.97387 6.02078 6.20242 6.32776 6.43790 6.52821 6.93490 7.47441 8.98115 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.005985 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.916413 B = 4677.100792 C = 5261.342456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.523 5.523 3 C 0.033 3.967 4 C -0.114 4.114 5 C 0.078 3.922 6 H 0.080 0.920 7 N -0.526 5.526 8 C 0.060 3.940 9 C -0.100 4.100 10 C -0.094 4.094 11 C -0.099 4.099 12 C 0.051 3.949 13 H -0.006 1.006 14 C -0.535 4.535 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.095 3.905 23 C 0.007 3.993 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.021 0.979 38 H 0.060 0.940 39 H 0.259 0.741 40 H 0.016 0.984 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 7.088 -12.046 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.247 5.247 3 C -0.095 4.095 4 C -0.152 4.152 5 C -0.031 4.031 6 H 0.099 0.901 7 N -0.248 5.248 8 C -0.068 4.068 9 C -0.138 4.138 10 C -0.132 4.132 11 C -0.137 4.137 12 C 0.032 3.968 13 H 0.012 0.988 14 C -0.574 4.574 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.550 5.550 18 Si 0.777 3.223 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.032 4.032 23 C -0.122 4.122 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.727 7.041 -12.388 16.710 hybrid contribution -0.793 -1.057 1.651 2.115 sum -9.521 5.984 -10.737 15.548 Atomic orbital electron populations 1.22550 0.87109 1.02508 1.01367 1.65444 1.09158 1.16115 1.33954 1.23222 0.94702 0.89528 1.02001 1.22396 0.96906 0.96640 0.99220 1.22637 0.94096 0.97991 0.88363 0.90133 1.61857 1.50308 1.11412 1.01250 1.21875 0.93095 0.94614 0.97230 1.21916 0.97630 0.97129 0.97117 1.21076 0.98493 0.96240 0.97402 1.21178 0.96833 0.94136 1.01552 1.17587 0.93899 0.93755 0.91527 0.98829 1.21609 1.26939 0.98664 1.10155 0.93366 1.25666 0.95030 0.99578 0.98036 1.70048 1.29188 1.32414 1.23325 0.85620 0.77810 0.80431 0.78455 1.19342 1.20675 1.20601 1.20819 0.97656 0.89983 0.94712 1.23820 0.96769 1.00262 0.91396 0.89625 0.91301 0.95553 0.93541 0.88378 0.89755 0.90075 0.90383 0.96102 0.91702 0.91271 0.94494 0.94406 0.96022 0.92141 0.93149 0.96546 0.93758 0.91195 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.54 127.69 1.22 1.47 16 2 N -0.52 -12.14 5.67 -906.78 -5.14 -17.28 16 3 C 0.03 0.66 6.11 86.45 0.53 1.19 16 4 C -0.11 -2.61 5.94 31.49 0.19 -2.43 16 5 C 0.08 2.30 3.07 45.81 0.14 2.44 16 6 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 7 N -0.53 -18.52 4.25 -881.26 -3.74 -22.26 16 8 C 0.06 1.92 3.22 87.15 0.28 2.20 16 9 C -0.10 -3.19 6.14 31.39 0.19 -3.00 16 10 C -0.09 -3.89 5.42 30.21 0.16 -3.72 16 11 C -0.10 -4.83 4.77 30.29 0.14 -4.68 16 12 C 0.05 2.63 1.88 -13.22 -0.02 2.60 16 13 H -0.01 -0.37 7.58 -2.38 -0.02 -0.39 16 14 C -0.53 -29.99 8.50 25.60 0.22 -29.77 16 15 H 0.05 2.67 7.72 -2.91 -0.02 2.64 16 16 C 0.02 0.88 5.21 84.65 0.44 1.32 16 17 N -0.91 -53.22 11.17 21.45 0.24 -52.98 16 18 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.10 4.08 3.44 83.94 0.29 4.37 16 23 C 0.01 0.21 5.12 86.39 0.44 0.65 16 24 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.03 0.50 7.98 -2.39 -0.02 0.48 16 27 H 0.05 0.89 7.30 -2.39 -0.02 0.87 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.90 6.85 -2.39 -0.02 1.88 16 31 H 0.08 2.08 4.81 -2.39 -0.01 2.07 16 32 H 0.02 0.73 6.15 -2.39 -0.01 0.71 16 33 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.04 1.69 7.38 -2.39 -0.02 1.67 16 37 H 0.02 1.01 7.15 -2.39 -0.02 0.99 16 38 H 0.06 3.38 5.63 -2.39 -0.01 3.37 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.02 0.71 7.20 -2.39 -0.02 0.70 16 41 H 0.04 1.92 7.70 -2.38 -0.02 1.91 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 43 H 0.04 1.15 6.19 -2.39 -0.01 1.14 16 Total: -1.00 -60.55 311.41 -1.44 -61.99 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.96 Total: 11.74 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.22 Total: -27.36 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -8.65 Total: -92.53 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -60.55 -1.44 -61.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.925 kcal (2) G-P(sol) polarization free energy of solvation -60.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds