Wall clock time and date at job start Mon Mar 30 2020 04:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48558 * 110.99949 * 2 1 4 4 C 1.54379 * 104.59380 * 200.95563 * 3 2 1 5 5 C 1.54253 * 105.06037 * 23.85304 * 4 3 2 6 6 H 1.09003 * 110.32552 * 241.00025 * 5 4 3 7 7 N 1.46905 * 110.32615 * 118.89298 * 5 4 3 8 8 C 1.48001 * 110.99417 * 56.04803 * 7 5 4 9 9 C 1.50447 * 112.82210 * 84.84002 * 8 7 5 10 10 C 1.54305 * 108.48994 * 93.73248 * 9 8 7 11 11 C 1.45882 * 112.19483 * 281.44699 * 10 9 8 12 12 C 1.54321 * 112.17820 * 61.12051 * 11 10 9 13 13 H 1.08997 * 109.62903 * 41.38370 * 12 11 10 14 14 C 1.50694 * 109.63302 * 161.77952 * 12 11 10 15 15 H 1.08000 * 120.00563 * 119.60496 * 14 12 11 16 16 C 1.37885 * 119.99902 * 299.60660 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47743 * 111.07273 * 184.92678 * 7 5 4 23 23 C 1.48560 * 111.00399 * 244.57839 * 2 1 3 24 24 H 1.08999 * 109.46706 * 59.87720 * 1 2 3 25 25 H 1.08997 * 109.46718 * 179.87561 * 1 2 3 26 26 H 1.08994 * 109.47242 * 299.87708 * 1 2 3 27 27 H 1.09008 * 110.41238 * 82.17836 * 3 2 1 28 28 H 1.09004 * 110.51170 * 319.78633 * 3 2 1 29 29 H 1.08993 * 110.32528 * 264.95661 * 4 3 2 30 30 H 1.09002 * 110.41181 * 142.79136 * 4 3 2 31 31 H 1.08996 * 108.81635 * 323.97297 * 8 7 5 32 32 H 1.09005 * 108.80867 * 205.70073 * 8 7 5 33 33 H 1.08998 * 109.63495 * 334.03218 * 9 8 7 34 34 H 1.09003 * 109.63339 * 213.42854 * 9 8 7 35 35 H 1.09003 * 108.93976 * 160.75503 * 10 9 8 36 36 H 1.08999 * 108.94289 * 42.14638 * 10 9 8 37 37 H 1.09001 * 108.93750 * 300.42877 * 11 10 9 38 38 H 1.08997 * 108.87066 * 181.76636 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08997 * 108.87595 * 70.52828 * 22 7 5 41 41 H 1.09001 * 108.60243 * 312.33373 * 22 7 5 42 42 H 1.09002 * 110.40909 * 40.26013 * 23 2 1 43 43 H 1.08997 * 110.41075 * 277.82247 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5343 5 6 3.4434 -0.0539 -1.3583 6 1 4.1497 -0.7686 -0.9360 7 7 3.7809 0.2282 -2.7600 8 6 5.0796 0.9306 -2.8616 9 6 6.2533 -0.0105 -2.8655 10 6 6.6245 -0.3239 -4.3301 11 6 5.7300 -1.3099 -4.9265 12 6 4.2659 -0.8233 -4.9602 13 1 4.2360 0.2279 -5.2468 14 6 3.4831 -1.6416 -5.9544 15 1 2.6329 -2.2212 -5.6265 16 6 3.8523 -1.6503 -7.2829 17 7 4.8874 -0.9441 -7.6824 18 14 2.8824 -2.6653 -8.5151 19 1 3.4776 -2.5048 -9.8662 20 1 2.9261 -4.0963 -8.1212 21 1 1.4721 -2.2009 -8.5378 22 6 3.6713 -0.9903 -3.5883 23 6 2.0015 -0.5954 -1.2526 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3633 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8910 27 1 2.0079 1.7917 1.0121 28 1 1.4105 2.0229 -0.6592 29 1 4.1483 1.1748 0.2935 30 1 3.6956 2.0993 -1.1695 31 1 5.1780 1.6118 -2.0164 32 1 5.0930 1.5130 -3.7830 33 1 5.9849 -0.9329 -2.3504 34 1 7.1006 0.4586 -2.3653 35 1 7.6446 -0.7066 -4.3625 36 1 6.5750 0.5963 -4.9123 37 1 5.7831 -2.2318 -4.3472 38 1 6.0587 -1.5134 -5.9456 39 1 5.1473 -0.9506 -8.6169 40 1 2.6185 -1.2531 -3.6914 41 1 4.1864 -1.8046 -3.0788 42 1 1.4100 -0.2714 -2.1089 43 1 2.0080 -1.6831 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:30 Heat of formation + Delta-G solvation = 7.693125 kcal Electronic energy + Delta-G solvation = -20006.984805 eV Core-core repulsion = 17279.704099 eV Total energy + Delta-G solvation = -2727.280705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.48827 -37.60883 -34.12302 -32.80224 -31.09338 -30.30488 -28.45194 -26.12244 -25.40745 -23.93125 -23.18376 -20.91748 -20.51032 -19.12954 -18.36732 -16.79964 -15.96860 -15.60874 -15.08377 -14.47376 -14.21448 -14.08084 -13.68733 -13.34263 -12.97231 -12.70150 -12.47083 -12.21934 -11.89739 -11.57052 -11.47426 -11.38918 -11.09699 -11.00896 -10.83923 -10.80344 -10.61077 -10.46008 -10.24220 -10.05914 -9.59497 -9.36396 -9.08127 -8.75483 -8.43956 -8.25130 -7.49533 -5.96420 -4.02010 3.33239 3.37822 3.40459 4.03032 4.43738 4.61101 4.81422 4.84398 5.21477 5.32477 5.37826 5.44468 5.49993 5.55438 5.61012 5.75490 5.80929 5.82239 5.84847 6.03318 6.10121 6.11474 6.14395 6.24020 6.30194 6.34302 6.48794 6.59668 6.63604 6.79006 6.85815 6.96298 7.05056 7.23775 7.27990 7.45927 7.66901 7.79781 7.86792 8.16253 8.17522 8.51392 9.01628 9.61697 11.09528 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.006449 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.886220 B = 4340.460378 C = 5307.546187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.036 3.964 4 C -0.120 4.120 5 C 0.085 3.915 6 H 0.043 0.957 7 N -0.545 5.545 8 C 0.063 3.937 9 C -0.146 4.146 10 C -0.103 4.103 11 C -0.119 4.119 12 C 0.053 3.947 13 H 0.037 0.963 14 C -0.508 4.508 15 H 0.053 0.947 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.278 1.278 22 C 0.079 3.921 23 C 0.040 3.960 24 H 0.030 0.970 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.091 0.909 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.013 0.987 42 H 0.060 0.940 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 3.863 12.947 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.024 4.024 6 H 0.061 0.939 7 N -0.271 5.271 8 C -0.065 4.065 9 C -0.185 4.185 10 C -0.140 4.140 11 C -0.157 4.157 12 C 0.034 3.966 13 H 0.055 0.945 14 C -0.547 4.547 15 H 0.071 0.929 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.717 3.283 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.203 1.203 22 C -0.047 4.047 23 C -0.088 4.088 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.032 0.968 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.338 3.901 13.074 13.843 hybrid contribution -0.165 -0.770 -1.155 1.397 sum -2.503 3.131 11.920 12.576 Atomic orbital electron populations 1.22478 0.88323 1.02038 1.00597 1.65371 1.07990 1.15431 1.35580 1.23064 0.95587 0.90200 1.00394 1.22466 0.96055 0.98468 0.98847 1.22209 0.95389 0.95472 0.89370 0.93943 1.61945 1.29894 1.28814 1.06417 1.21848 0.86736 0.96082 1.01784 1.21921 0.98236 0.99907 0.98485 1.20548 0.98515 1.00968 0.94002 1.20620 0.97562 0.95472 1.02040 1.18428 0.91203 0.97809 0.89159 0.94490 1.21167 1.12920 1.28193 0.92434 0.92867 1.24937 0.95123 0.95587 0.98286 1.69898 1.25949 1.40754 1.16053 0.86713 0.80361 0.80762 0.80473 1.21352 1.20378 1.20334 1.22012 1.00341 0.87493 0.94837 1.23175 0.95223 0.99505 0.90874 0.95183 0.91425 0.91657 0.90709 0.93652 0.91574 0.90008 0.92316 0.90752 0.92611 0.92950 0.94648 0.92568 0.96020 0.89097 0.93066 0.92072 0.96837 0.92136 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.53 60.07 0.57 0.74 16 2 N -0.52 -6.99 5.66 -238.23 -1.35 -8.34 16 3 C 0.04 0.44 6.49 -2.18 -0.01 0.43 16 4 C -0.12 -1.58 5.80 -25.35 -0.15 -1.72 16 5 C 0.09 1.33 2.72 -66.33 -0.18 1.15 16 6 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 7 N -0.55 -9.90 4.50 -226.48 -1.02 -10.92 16 8 C 0.06 1.07 4.82 -4.49 -0.02 1.05 16 9 C -0.15 -2.50 5.60 -27.32 -0.15 -2.66 16 10 C -0.10 -2.04 5.30 -29.42 -0.16 -2.20 16 11 C -0.12 -2.79 4.55 -29.41 -0.13 -2.92 16 12 C 0.05 1.29 1.77 -92.36 -0.16 1.13 16 13 H 0.04 1.01 7.10 -51.93 -0.37 0.64 16 14 C -0.51 -13.85 8.45 -34.44 -0.29 -14.14 16 15 H 0.05 1.43 7.46 -52.49 -0.39 1.04 16 16 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 17 N -0.89 -25.15 11.41 55.43 0.63 -24.52 16 18 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C 0.08 1.67 4.06 -4.63 -0.02 1.65 16 23 C 0.04 0.61 5.09 -2.18 -0.01 0.60 16 24 H 0.03 0.35 7.98 -51.93 -0.41 -0.07 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.05 0.57 7.97 -51.93 -0.41 0.15 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.08 6.42 -51.93 -0.33 0.75 16 31 H 0.06 0.86 5.70 -51.93 -0.30 0.56 16 32 H 0.07 1.40 6.59 -51.93 -0.34 1.05 16 33 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.17 7.52 -51.93 -0.39 0.78 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.09 2.42 5.85 -51.93 -0.30 2.12 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.06 1.33 6.60 -51.93 -0.34 0.99 16 41 H 0.01 0.28 6.50 -51.93 -0.34 -0.05 16 42 H 0.06 1.00 7.43 -51.93 -0.39 0.62 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -27.60 312.32 -10.42 -38.03 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.56 Total: 0.12 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.81 Total: -15.30 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -1.73 Total: -43.78 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.60 -10.42 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.719 kcal (2) G-P(sol) polarization free energy of solvation -27.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds