Wall clock time and date at job start Mon Mar 30 2020 04:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48558 * 110.99949 * 2 1 4 4 C 1.54379 * 104.59380 * 200.95563 * 3 2 1 5 5 C 1.54253 * 105.06037 * 23.85304 * 4 3 2 6 6 H 1.09003 * 110.32552 * 241.00025 * 5 4 3 7 7 N 1.46905 * 110.32615 * 118.89298 * 5 4 3 8 8 C 1.48001 * 110.99417 * 56.04803 * 7 5 4 9 9 C 1.50447 * 112.82210 * 84.84002 * 8 7 5 10 10 C 1.54305 * 108.48994 * 93.73248 * 9 8 7 11 11 C 1.45882 * 112.19483 * 281.44699 * 10 9 8 12 12 C 1.54321 * 112.17820 * 61.12051 * 11 10 9 13 13 H 1.08997 * 109.62903 * 41.38370 * 12 11 10 14 14 C 1.50694 * 109.63302 * 161.77952 * 12 11 10 15 15 H 1.08000 * 120.00563 * 119.60496 * 14 12 11 16 16 C 1.37885 * 119.99902 * 299.60660 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47743 * 111.07273 * 184.92678 * 7 5 4 23 23 C 1.48560 * 111.00399 * 244.57839 * 2 1 3 24 24 H 1.08999 * 109.46706 * 59.87720 * 1 2 3 25 25 H 1.08997 * 109.46718 * 179.87561 * 1 2 3 26 26 H 1.08994 * 109.47242 * 299.87708 * 1 2 3 27 27 H 1.09008 * 110.41238 * 82.17836 * 3 2 1 28 28 H 1.09004 * 110.51170 * 319.78633 * 3 2 1 29 29 H 1.08993 * 110.32528 * 264.95661 * 4 3 2 30 30 H 1.09002 * 110.41181 * 142.79136 * 4 3 2 31 31 H 1.08996 * 108.81635 * 323.97297 * 8 7 5 32 32 H 1.09005 * 108.80867 * 205.70073 * 8 7 5 33 33 H 1.08998 * 109.63495 * 334.03218 * 9 8 7 34 34 H 1.09003 * 109.63339 * 213.42854 * 9 8 7 35 35 H 1.09003 * 108.93976 * 160.75503 * 10 9 8 36 36 H 1.08999 * 108.94289 * 42.14638 * 10 9 8 37 37 H 1.09001 * 108.93750 * 300.42877 * 11 10 9 38 38 H 1.08997 * 108.87066 * 181.76636 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.08997 * 108.87595 * 70.52828 * 22 7 5 41 41 H 1.09001 * 108.60243 * 312.33373 * 22 7 5 42 42 H 1.09002 * 110.40909 * 40.26013 * 23 2 1 43 43 H 1.08997 * 110.41075 * 277.82247 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2501 -0.5343 5 6 3.4434 -0.0539 -1.3583 6 1 4.1497 -0.7686 -0.9360 7 7 3.7809 0.2282 -2.7600 8 6 5.0796 0.9306 -2.8616 9 6 6.2533 -0.0105 -2.8655 10 6 6.6245 -0.3239 -4.3301 11 6 5.7300 -1.3099 -4.9265 12 6 4.2659 -0.8233 -4.9602 13 1 4.2360 0.2279 -5.2468 14 6 3.4831 -1.6416 -5.9544 15 1 2.6329 -2.2212 -5.6265 16 6 3.8523 -1.6503 -7.2829 17 7 4.8874 -0.9441 -7.6824 18 14 2.8824 -2.6653 -8.5151 19 1 3.4776 -2.5048 -9.8662 20 1 2.9261 -4.0963 -8.1212 21 1 1.4721 -2.2009 -8.5378 22 6 3.6713 -0.9903 -3.5883 23 6 2.0015 -0.5954 -1.2526 24 1 -0.3633 0.5157 -0.8889 25 1 -0.3633 -1.0277 -0.0022 26 1 -0.3633 0.5119 0.8910 27 1 2.0079 1.7917 1.0121 28 1 1.4105 2.0229 -0.6592 29 1 4.1483 1.1748 0.2935 30 1 3.6956 2.0993 -1.1695 31 1 5.1780 1.6118 -2.0164 32 1 5.0930 1.5130 -3.7830 33 1 5.9849 -0.9329 -2.3504 34 1 7.1006 0.4586 -2.3653 35 1 7.6446 -0.7066 -4.3625 36 1 6.5750 0.5963 -4.9123 37 1 5.7831 -2.2318 -4.3472 38 1 6.0587 -1.5134 -5.9456 39 1 5.1473 -0.9506 -8.6169 40 1 2.6185 -1.2531 -3.6914 41 1 4.1864 -1.8046 -3.0788 42 1 1.4100 -0.2714 -2.1089 43 1 2.0080 -1.6831 -1.1837 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259849852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:30 Heat of formation + Delta-G solvation = -10.266784 kcal Electronic energy + Delta-G solvation = -20007.763605 eV Core-core repulsion = 17279.704099 eV Total energy + Delta-G solvation = -2728.059505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83052 -38.99302 -35.75992 -34.52676 -32.70613 -31.71478 -29.71890 -27.76132 -26.80097 -25.33615 -24.89857 -22.10104 -21.81857 -20.89898 -19.82494 -18.65852 -17.33255 -16.94326 -16.63448 -16.21104 -15.67800 -15.26989 -15.02164 -14.76828 -14.39539 -14.19552 -14.03499 -13.69999 -13.40390 -13.20239 -12.84116 -12.73249 -12.54892 -12.45246 -12.36307 -12.18791 -12.14898 -11.95781 -11.70706 -11.52232 -11.43209 -11.17572 -10.91690 -10.64892 -10.34059 -9.50039 -8.96857 -8.08082 -6.20934 1.41090 1.41970 1.49441 2.42801 2.85075 3.18889 3.35290 3.66523 3.77337 3.97030 4.15385 4.17768 4.32542 4.39083 4.43170 4.50183 4.56300 4.62875 4.67785 4.73585 4.76548 4.88513 4.91362 4.94137 4.98830 5.04909 5.08589 5.09728 5.15253 5.20822 5.26978 5.48202 5.50416 5.59975 5.68095 5.76639 5.92934 6.04192 6.16695 6.29857 6.46737 6.52035 6.90964 7.46194 8.96512 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.006449 C = 0.005274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.886220 B = 4340.460378 C = 5307.546187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.037 3.963 4 C -0.114 4.114 5 C 0.083 3.917 6 H 0.040 0.960 7 N -0.553 5.553 8 C 0.063 3.937 9 C -0.134 4.134 10 C -0.102 4.102 11 C -0.108 4.108 12 C 0.055 3.945 13 H 0.004 0.996 14 C -0.532 4.532 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.912 5.912 18 Si 0.950 3.050 19 H -0.283 1.283 20 H -0.272 1.272 21 H -0.273 1.273 22 C 0.096 3.904 23 C 0.043 3.957 24 H 0.024 0.976 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.019 0.981 38 H 0.055 0.945 39 H 0.260 0.740 40 H 0.047 0.953 41 H 0.011 0.989 42 H 0.039 0.961 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 4.252 14.870 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.091 4.091 4 C -0.152 4.152 5 C -0.026 4.026 6 H 0.058 0.942 7 N -0.278 5.278 8 C -0.064 4.064 9 C -0.173 4.173 10 C -0.139 4.139 11 C -0.147 4.147 12 C 0.037 3.963 13 H 0.022 0.978 14 C -0.571 4.571 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.552 5.552 18 Si 0.776 3.224 19 H -0.209 1.209 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.030 4.030 23 C -0.085 4.085 24 H 0.042 0.958 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.038 0.962 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.058 0.942 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.449 4.296 15.015 15.808 hybrid contribution -0.153 -0.875 -1.743 1.956 sum -2.602 3.421 13.272 13.951 Atomic orbital electron populations 1.22545 0.87087 1.02556 1.01311 1.65399 1.09246 1.16146 1.34004 1.23133 0.94837 0.89512 1.01641 1.22459 0.97188 0.96674 0.98911 1.22296 0.95329 0.97132 0.87837 0.94181 1.61836 1.30917 1.27233 1.07850 1.21874 0.86181 0.96251 1.02113 1.21826 0.99398 0.99916 0.96189 1.20468 0.98438 0.99187 0.95842 1.20454 0.97491 0.96466 1.00245 1.18314 0.92064 0.95278 0.90672 0.97789 1.21554 1.13272 1.28655 0.93601 0.93253 1.25674 0.96020 0.96625 1.00033 1.70034 1.27064 1.41766 1.16288 0.85740 0.79049 0.79430 0.78205 1.20888 1.19703 1.19864 1.21606 0.98989 0.88891 0.93553 1.23061 0.94976 0.99325 0.91148 0.95765 0.91121 0.89567 0.88356 0.94039 0.89612 0.89986 0.88983 0.93034 0.93054 0.89540 0.93172 0.93994 0.96187 0.92640 0.93130 0.93419 0.97070 0.94219 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.53 127.69 1.22 1.50 16 2 N -0.52 -13.04 5.66 -907.62 -5.14 -18.18 16 3 C 0.04 0.80 6.49 86.45 0.56 1.36 16 4 C -0.11 -2.66 5.80 31.49 0.18 -2.47 16 5 C 0.08 2.47 2.72 45.81 0.12 2.59 16 6 H 0.04 1.23 7.86 -2.39 -0.02 1.21 16 7 N -0.55 -19.85 4.50 -870.45 -3.91 -23.77 16 8 C 0.06 2.06 4.82 85.27 0.41 2.47 16 9 C -0.13 -4.34 5.60 30.21 0.17 -4.17 16 10 C -0.10 -4.04 5.30 28.85 0.15 -3.88 16 11 C -0.11 -5.22 4.55 28.86 0.13 -5.09 16 12 C 0.06 2.82 1.77 -11.92 -0.02 2.80 16 13 H 0.00 0.23 7.10 -2.39 -0.02 0.21 16 14 C -0.53 -29.88 8.45 25.60 0.22 -29.66 16 15 H 0.05 2.73 7.46 -2.91 -0.02 2.71 16 16 C 0.02 0.86 5.20 84.66 0.44 1.30 16 17 N -0.91 -53.15 11.41 21.45 0.24 -52.90 16 18 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 C 0.10 4.15 4.06 85.32 0.35 4.50 16 23 C 0.04 1.29 5.09 86.45 0.44 1.73 16 24 H 0.02 0.53 7.98 -2.39 -0.02 0.51 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.04 0.94 7.97 -2.38 -0.02 0.92 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.92 6.42 -2.39 -0.02 1.91 16 31 H 0.09 2.41 5.70 -2.39 -0.01 2.40 16 32 H 0.05 1.94 6.59 -2.38 -0.02 1.92 16 33 H 0.05 1.73 6.73 -2.39 -0.02 1.71 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.77 7.52 -2.39 -0.02 1.75 16 37 H 0.02 0.93 7.53 -2.39 -0.02 0.91 16 38 H 0.06 3.06 5.85 -2.39 -0.01 3.04 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.05 2.15 6.60 -2.39 -0.02 2.13 16 41 H 0.01 0.48 6.50 -2.39 -0.02 0.46 16 42 H 0.04 1.33 7.43 -2.39 -0.02 1.31 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -60.61 312.32 -1.45 -62.06 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.96 Total: 13.62 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 4.37 Total: -27.04 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -8.81 Total: -94.85 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.61 -1.45 -62.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.789 kcal (2) G-P(sol) polarization free energy of solvation -60.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds