Wall clock time and date at job start Mon Mar 30 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46953 * 110.99577 * 2 1 4 4 C 1.53062 * 109.36354 * 183.18864 * 3 2 1 5 5 N 1.46954 * 109.36548 * 301.59967 * 4 3 2 6 6 C 1.46893 * 110.99974 * 183.18425 * 5 4 3 7 7 H 1.09001 * 109.46923 * 55.00322 * 6 5 4 8 8 C 1.52995 * 109.47545 * 295.00371 * 6 5 4 9 9 C 1.53001 * 109.47380 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47143 * 59.99904 * 9 8 6 11 11 C 1.53001 * 109.46878 * 300.00013 * 10 9 8 12 12 H 1.09001 * 109.47289 * 299.99988 * 11 10 9 13 13 C 1.50703 * 109.46986 * 180.02562 * 11 10 9 14 14 H 1.08007 * 120.00036 * 245.44389 * 13 11 10 15 15 C 1.37875 * 120.00189 * 65.44256 * 13 11 10 16 16 N 1.31519 * 119.99792 * 9.57618 * 15 13 11 17 17 Si 1.86797 * 120.00284 * 189.57278 * 15 13 11 18 18 H 1.48502 * 109.47022 * 94.99075 * 17 15 13 19 19 H 1.48498 * 109.47414 * 214.99194 * 17 15 13 20 20 H 1.48499 * 109.47235 * 334.99325 * 17 15 13 21 21 C 1.52998 * 109.47188 * 174.99847 * 6 5 4 22 22 C 1.46965 * 110.87683 * 59.31797 * 5 4 3 23 23 C 1.46954 * 111.00300 * 123.79954 * 2 1 3 24 24 H 1.08993 * 109.47767 * 60.00195 * 1 2 3 25 25 H 1.09007 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47306 * 299.99466 * 1 2 3 27 27 H 1.09005 * 109.48907 * 63.22753 * 3 2 1 28 28 H 1.09001 * 109.49403 * 303.15715 * 3 2 1 29 29 H 1.08996 * 109.48781 * 181.63266 * 4 3 2 30 30 H 1.08998 * 109.48564 * 61.57103 * 4 3 2 31 31 H 1.09001 * 109.46970 * 299.99922 * 8 6 5 32 32 H 1.09000 * 109.47473 * 59.99718 * 8 6 5 33 33 H 1.09001 * 109.47027 * 299.99914 * 9 8 6 34 34 H 1.08993 * 109.47197 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47087 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.47131 * 59.99541 * 10 9 8 37 37 H 0.96999 * 119.99938 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.47436 * 300.00566 * 21 6 5 39 39 H 1.09001 * 109.46801 * 60.00401 * 21 6 5 40 40 H 1.08995 * 109.48561 * 60.64822 * 22 5 4 41 41 H 1.08998 * 109.48497 * 180.71332 * 22 5 4 42 42 H 1.08998 * 109.49347 * 296.78090 * 23 2 1 43 43 H 1.09006 * 109.48898 * 56.84917 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5190 0.5660 1.0596 7 1 5.8823 1.5935 1.0381 8 6 6.0291 -0.1811 -0.1742 9 6 7.5591 -0.1805 -0.1746 10 6 8.0697 -0.8751 1.0894 11 6 7.5597 -0.1279 2.3233 12 1 7.9226 0.8997 2.3016 13 6 8.0631 -0.8117 3.5683 14 1 7.3659 -1.2846 4.2442 15 6 9.4137 -0.8336 3.8447 16 7 10.2428 -0.1035 3.1310 17 14 10.0660 -1.9001 5.2326 18 1 10.5173 -3.2044 4.6844 19 1 11.2098 -1.2158 5.8872 20 1 8.9893 -2.1282 6.2296 21 6 6.0291 -0.1289 2.3237 22 6 3.5234 -0.8060 1.0597 23 6 1.9957 -0.7632 1.1400 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6937 1.8773 0.9174 28 1 1.6011 1.9129 -0.8602 29 1 3.9176 2.3449 -0.0512 30 1 3.8253 0.8481 -1.0107 31 1 5.6658 -1.2086 -0.1527 32 1 5.6657 0.3139 -1.0748 33 1 7.9220 0.8470 -0.1964 34 1 7.9224 -0.7132 -1.0534 35 1 9.1597 -0.8751 1.0889 36 1 7.7067 -1.9027 1.1112 37 1 11.1930 -0.1186 3.3257 38 1 5.6658 0.4035 3.2028 39 1 5.6658 -1.1563 2.3452 40 1 3.8253 -1.3113 0.1423 41 1 3.9178 -1.3469 1.9199 42 1 1.6938 -0.2821 2.0704 43 1 1.6014 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:09 Heat of formation + Delta-G solvation = -6.034917 kcal Electronic energy + Delta-G solvation = -19782.089577 eV Core-core repulsion = 17054.213579 eV Total energy + Delta-G solvation = -2727.875998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65620 -37.40873 -34.61691 -32.43229 -30.93592 -29.84619 -29.35684 -26.65155 -24.79720 -23.79344 -23.40252 -21.20949 -20.86688 -19.42926 -18.30347 -16.57642 -15.70394 -15.17314 -14.86460 -14.73524 -14.62312 -14.31633 -13.86128 -13.57247 -13.18769 -12.76996 -12.48741 -12.43354 -12.20067 -11.77712 -11.50775 -11.46088 -11.25791 -10.94222 -10.86256 -10.74068 -10.62954 -10.43854 -10.06195 -9.99261 -9.81023 -9.30009 -8.93147 -8.68155 -8.42261 -8.24888 -7.83104 -5.96744 -3.97501 3.33353 3.40774 3.43869 3.89283 4.20942 4.49285 4.94174 4.99398 5.16559 5.29100 5.34569 5.40301 5.45916 5.52414 5.53000 5.56149 5.65382 5.69746 5.80648 5.84048 6.01746 6.08468 6.10280 6.16312 6.35506 6.44429 6.46456 6.60266 6.75585 6.79865 6.88167 6.96430 6.99311 7.12371 7.25088 7.41688 7.47919 7.59121 7.80278 8.05278 8.09330 8.51810 9.06827 9.65478 11.12343 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.004993 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.366401 B = 5606.082547 C = 6017.902466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.053 3.947 5 N -0.534 5.534 6 C 0.086 3.914 7 H 0.076 0.924 8 C -0.142 4.142 9 C -0.114 4.114 10 C -0.104 4.104 11 C 0.049 3.951 12 H 0.032 0.968 13 C -0.512 4.512 14 H 0.054 0.946 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.884 3.116 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C -0.095 4.095 22 C 0.051 3.949 23 C 0.057 3.943 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.041 1.083 -7.315 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.075 4.075 5 N -0.258 5.258 6 C -0.021 4.021 7 H 0.094 0.906 8 C -0.181 4.181 9 C -0.153 4.153 10 C -0.142 4.142 11 C 0.030 3.970 12 H 0.050 0.950 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.527 5.527 17 Si 0.712 3.288 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.133 4.133 22 C -0.077 4.077 23 C -0.071 4.071 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.870 1.142 -7.317 16.612 hybrid contribution 0.443 -0.602 0.664 1.000 sum -14.427 0.540 -6.652 15.896 Atomic orbital electron populations 1.22328 0.87656 1.01839 1.00416 1.62162 1.07407 1.14208 1.43356 1.22169 0.95214 0.89050 1.00557 1.22134 0.93522 0.98716 0.93128 1.62469 1.08695 1.13265 1.41333 1.21862 0.84306 0.99900 0.96071 0.90602 1.22133 0.97680 1.00434 0.97857 1.21545 0.93831 1.00736 0.99140 1.21555 1.01841 0.97456 0.93311 1.18650 0.88366 0.96835 0.93121 0.95004 1.21179 0.91915 1.35102 1.06871 0.92809 1.24946 0.97235 0.95317 0.96279 1.69974 1.03201 1.38656 1.40896 0.86703 0.78621 0.80888 0.82544 1.20816 1.21390 1.19928 1.21690 0.98920 0.98336 0.94310 1.22214 0.93045 0.90711 1.01715 1.22207 0.95442 0.97888 0.91553 0.91606 0.91553 0.95769 0.94163 0.90812 0.90616 0.93948 0.92419 0.93582 0.92854 0.94055 0.91082 0.94734 0.93165 0.92798 0.93460 0.93858 0.89531 0.94128 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.06 0.58 0.82 16 2 N -0.55 -6.62 4.97 -242.75 -1.21 -7.83 16 3 C 0.06 0.69 5.62 -3.76 -0.02 0.67 16 4 C 0.05 0.72 5.25 -3.76 -0.02 0.70 16 5 N -0.53 -8.35 4.70 -226.49 -1.06 -9.41 16 6 C 0.09 1.53 2.23 -67.72 -0.15 1.37 16 7 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 8 C -0.14 -2.43 4.50 -26.73 -0.12 -2.55 16 9 C -0.11 -2.19 5.92 -26.73 -0.16 -2.35 16 10 C -0.10 -2.39 5.04 -26.73 -0.13 -2.52 16 11 C 0.05 1.21 1.97 -91.74 -0.18 1.03 16 12 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 13 C -0.51 -14.06 8.48 -34.44 -0.29 -14.35 16 14 H 0.05 1.47 7.77 -52.48 -0.41 1.06 16 15 C 0.06 1.77 5.20 -17.82 -0.09 1.67 16 16 N -0.89 -25.61 12.16 55.43 0.67 -24.94 16 17 Si 0.88 21.38 29.55 -169.99 -5.02 16.36 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 C -0.09 -1.96 4.24 -26.70 -0.11 -2.08 16 22 C 0.05 0.75 4.81 -3.76 -0.02 0.74 16 23 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.04 0.60 6.60 -51.93 -0.34 0.25 16 31 H 0.06 1.00 6.46 -51.93 -0.34 0.66 16 32 H 0.05 0.72 6.59 -51.93 -0.34 0.38 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.84 6.91 -51.93 -0.36 1.48 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.97 6.36 -51.93 -0.33 0.64 16 40 H 0.04 0.66 6.46 -51.93 -0.34 0.33 16 41 H 0.09 1.34 6.17 -51.93 -0.32 1.02 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -28.20 316.67 -10.41 -38.61 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.82 Total: -1.43 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.75 Total: -16.14 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -1.60 Total: -42.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.20 -10.41 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.576 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds