Wall clock time and date at job start Mon Mar 30 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46953 * 110.99577 * 2 1 4 4 C 1.53062 * 109.36354 * 183.18864 * 3 2 1 5 5 N 1.46954 * 109.36548 * 301.59967 * 4 3 2 6 6 C 1.46893 * 110.99974 * 183.18425 * 5 4 3 7 7 H 1.09001 * 109.46923 * 55.00322 * 6 5 4 8 8 C 1.52995 * 109.47545 * 295.00371 * 6 5 4 9 9 C 1.53001 * 109.47380 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47143 * 59.99904 * 9 8 6 11 11 C 1.53001 * 109.46878 * 300.00013 * 10 9 8 12 12 H 1.09001 * 109.47289 * 299.99988 * 11 10 9 13 13 C 1.50703 * 109.46986 * 180.02562 * 11 10 9 14 14 H 1.08007 * 120.00036 * 245.44389 * 13 11 10 15 15 C 1.37875 * 120.00189 * 65.44256 * 13 11 10 16 16 N 1.31519 * 119.99792 * 9.57618 * 15 13 11 17 17 Si 1.86797 * 120.00284 * 189.57278 * 15 13 11 18 18 H 1.48502 * 109.47022 * 94.99075 * 17 15 13 19 19 H 1.48498 * 109.47414 * 214.99194 * 17 15 13 20 20 H 1.48499 * 109.47235 * 334.99325 * 17 15 13 21 21 C 1.52998 * 109.47188 * 174.99847 * 6 5 4 22 22 C 1.46965 * 110.87683 * 59.31797 * 5 4 3 23 23 C 1.46954 * 111.00300 * 123.79954 * 2 1 3 24 24 H 1.08993 * 109.47767 * 60.00195 * 1 2 3 25 25 H 1.09007 * 109.47071 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47306 * 299.99466 * 1 2 3 27 27 H 1.09005 * 109.48907 * 63.22753 * 3 2 1 28 28 H 1.09001 * 109.49403 * 303.15715 * 3 2 1 29 29 H 1.08996 * 109.48781 * 181.63266 * 4 3 2 30 30 H 1.08998 * 109.48564 * 61.57103 * 4 3 2 31 31 H 1.09001 * 109.46970 * 299.99922 * 8 6 5 32 32 H 1.09000 * 109.47473 * 59.99718 * 8 6 5 33 33 H 1.09001 * 109.47027 * 299.99914 * 9 8 6 34 34 H 1.08993 * 109.47197 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47087 * 179.97438 * 10 9 8 36 36 H 1.09003 * 109.47131 * 59.99541 * 10 9 8 37 37 H 0.96999 * 119.99938 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.47436 * 300.00566 * 21 6 5 39 39 H 1.09001 * 109.46801 * 60.00401 * 21 6 5 40 40 H 1.08995 * 109.48561 * 60.64822 * 22 5 4 41 41 H 1.08998 * 109.48497 * 180.71332 * 22 5 4 42 42 H 1.08998 * 109.49347 * 296.78090 * 23 2 1 43 43 H 1.09006 * 109.48898 * 56.84917 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0501 0.5660 1.0597 6 6 5.5190 0.5660 1.0596 7 1 5.8823 1.5935 1.0381 8 6 6.0291 -0.1811 -0.1742 9 6 7.5591 -0.1805 -0.1746 10 6 8.0697 -0.8751 1.0894 11 6 7.5597 -0.1279 2.3233 12 1 7.9226 0.8997 2.3016 13 6 8.0631 -0.8117 3.5683 14 1 7.3659 -1.2846 4.2442 15 6 9.4137 -0.8336 3.8447 16 7 10.2428 -0.1035 3.1310 17 14 10.0660 -1.9001 5.2326 18 1 10.5173 -3.2044 4.6844 19 1 11.2098 -1.2158 5.8872 20 1 8.9893 -2.1282 6.2296 21 6 6.0291 -0.1289 2.3237 22 6 3.5234 -0.8060 1.0597 23 6 1.9957 -0.7632 1.1400 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6937 1.8773 0.9174 28 1 1.6011 1.9129 -0.8602 29 1 3.9176 2.3449 -0.0512 30 1 3.8253 0.8481 -1.0107 31 1 5.6658 -1.2086 -0.1527 32 1 5.6657 0.3139 -1.0748 33 1 7.9220 0.8470 -0.1964 34 1 7.9224 -0.7132 -1.0534 35 1 9.1597 -0.8751 1.0889 36 1 7.7067 -1.9027 1.1112 37 1 11.1930 -0.1186 3.3257 38 1 5.6658 0.4035 3.2028 39 1 5.6658 -1.1563 2.3452 40 1 3.8253 -1.3113 0.1423 41 1 3.9178 -1.3469 1.9199 42 1 1.6938 -0.2821 2.0704 43 1 1.6014 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:08 Heat of formation + Delta-G solvation = -24.035562 kcal Electronic energy + Delta-G solvation = -19782.870143 eV Core-core repulsion = 17054.213579 eV Total energy + Delta-G solvation = -2728.656564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.91200 -38.75280 -36.05263 -34.31618 -32.06164 -31.51301 -30.76063 -27.84494 -26.78542 -24.85692 -24.47665 -22.86491 -22.32233 -20.85667 -19.77241 -18.43655 -17.12566 -16.49860 -16.21792 -15.90602 -15.86037 -15.62258 -15.20936 -14.97232 -14.72594 -14.37310 -14.17006 -13.45044 -13.39182 -13.34870 -12.86442 -12.81842 -12.65615 -12.48790 -12.45714 -12.25410 -12.04230 -11.81390 -11.75751 -11.53570 -11.47954 -11.13991 -10.74968 -10.55656 -10.37217 -9.35183 -9.07527 -8.10693 -6.18558 1.40246 1.41739 1.51685 2.44340 2.97179 3.03146 3.19286 3.85984 3.94001 4.09238 4.13655 4.23475 4.29724 4.32627 4.42311 4.56894 4.60491 4.64548 4.71980 4.73170 4.78629 4.80746 4.86884 4.95364 4.99107 5.00731 5.03169 5.07300 5.11442 5.17786 5.35308 5.40186 5.45330 5.60099 5.67367 6.01572 6.02683 6.04651 6.11512 6.25800 6.27572 6.43582 6.94055 7.47856 8.97686 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037406 B = 0.004993 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.366401 B = 5606.082547 C = 6017.902466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.062 3.938 4 C 0.053 3.947 5 N -0.541 5.541 6 C 0.096 3.904 7 H 0.067 0.933 8 C -0.130 4.130 9 C -0.107 4.107 10 C -0.095 4.095 11 C 0.048 3.952 12 H -0.003 1.003 13 C -0.533 4.533 14 H 0.049 0.951 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.947 3.053 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.082 4.082 22 C 0.052 3.948 23 C 0.063 3.937 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.034 0.966 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.260 0.740 38 H 0.039 0.961 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.807 0.626 -8.232 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.281 5.281 3 C -0.066 4.066 4 C -0.075 4.075 5 N -0.265 5.265 6 C -0.012 4.012 7 H 0.085 0.915 8 C -0.169 4.169 9 C -0.146 4.146 10 C -0.133 4.133 11 C 0.029 3.971 12 H 0.015 0.985 13 C -0.572 4.572 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.557 5.557 17 Si 0.773 3.227 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.120 4.120 22 C -0.076 4.076 23 C -0.065 4.065 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.660 0.684 -8.237 18.598 hybrid contribution 0.973 -0.436 0.960 1.435 sum -15.687 0.248 -7.276 17.294 Atomic orbital electron populations 1.22388 0.85874 1.02743 1.01127 1.62188 1.09055 1.14102 1.42801 1.22161 0.93892 0.89299 1.01245 1.22218 0.94797 0.98535 0.91969 1.62411 1.07005 1.14193 1.42864 1.21591 0.86046 0.98939 0.94657 0.91460 1.22021 0.95762 1.00729 0.98415 1.21448 0.95450 1.00041 0.97622 1.21363 0.99628 0.97569 0.94790 1.18596 0.90924 0.94574 0.93054 0.98523 1.21561 0.92308 1.35331 1.07955 0.93300 1.25691 0.97513 0.96356 0.98752 1.70093 1.03377 1.39794 1.42447 0.85714 0.78005 0.79228 0.79768 1.20162 1.21026 1.19307 1.21456 0.96178 0.98675 0.95664 1.22203 0.94614 0.89889 1.00882 1.22133 0.93824 0.98941 0.91628 0.90260 0.90634 0.95633 0.94773 0.88639 0.90073 0.93989 0.92210 0.91219 0.93420 0.92103 0.94497 0.94950 0.93136 0.94245 0.93304 0.94138 0.90918 0.94854 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.60 127.69 1.23 1.65 16 2 N -0.56 -11.93 4.97 -921.93 -4.58 -16.51 16 3 C 0.06 1.31 5.62 86.31 0.49 1.80 16 4 C 0.05 1.31 5.25 86.31 0.45 1.76 16 5 N -0.54 -16.24 4.70 -870.49 -4.09 -20.33 16 6 C 0.10 3.34 2.23 44.91 0.10 3.44 16 7 H 0.07 2.47 8.11 -2.39 -0.02 2.45 16 8 C -0.13 -4.24 4.50 30.59 0.14 -4.11 16 9 C -0.11 -4.04 5.92 30.60 0.18 -3.86 16 10 C -0.10 -4.49 5.04 30.59 0.15 -4.33 16 11 C 0.05 2.41 1.97 -11.52 -0.02 2.39 16 12 H 0.00 -0.20 8.09 -2.39 -0.02 -0.22 16 13 C -0.53 -30.03 8.48 25.60 0.22 -29.82 16 14 H 0.05 2.73 7.77 -2.91 -0.02 2.70 16 15 C 0.02 0.88 5.20 84.65 0.44 1.32 16 16 N -0.92 -54.29 12.16 21.45 0.26 -54.03 16 17 Si 0.95 44.37 29.55 68.60 2.03 46.40 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C -0.08 -3.45 4.24 30.61 0.13 -3.32 16 22 C 0.05 1.46 4.81 86.31 0.42 1.88 16 23 C 0.06 1.46 5.62 86.31 0.49 1.95 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.06 8.13 -2.38 -0.02 1.05 16 26 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 27 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 30 H 0.04 1.06 6.60 -2.39 -0.02 1.04 16 31 H 0.06 1.95 6.46 -2.39 -0.02 1.93 16 32 H 0.07 1.99 6.59 -2.39 -0.02 1.97 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.04 1.96 6.91 -2.39 -0.02 1.95 16 36 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 38 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.05 2.03 6.36 -2.39 -0.02 2.01 16 40 H 0.04 1.16 6.46 -2.39 -0.02 1.14 16 41 H 0.07 2.21 6.17 -2.39 -0.01 2.19 16 42 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 1.81 8.13 -2.38 -0.02 1.79 16 Total: -1.00 -61.13 316.67 -1.03 -62.16 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.95 Total: 11.56 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 4.40 Total: -29.25 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -8.41 Total: -90.87 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.13 -1.03 -62.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.123 kcal (2) G-P(sol) polarization free energy of solvation -61.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds