Wall clock time and date at job start Mon Mar 30 2020 04:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46957 * 110.99730 * 2 1 4 4 C 1.53054 * 109.36429 * 183.19196 * 3 2 1 5 5 N 1.46961 * 109.36319 * 301.59870 * 4 3 2 6 6 C 1.46897 * 110.99815 * 183.18804 * 5 4 3 7 7 H 1.08997 * 109.47319 * 299.99548 * 6 5 4 8 8 C 1.52996 * 109.47283 * 60.00233 * 6 5 4 9 9 C 1.53001 * 109.47279 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46985 * 299.99771 * 9 8 6 11 11 C 1.53008 * 109.47055 * 60.00229 * 10 9 8 12 12 H 1.09001 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47077 * 59.99534 * 11 10 9 14 14 H 1.07993 * 120.00262 * 275.11981 * 13 11 10 15 15 C 1.37880 * 119.99660 * 95.12562 * 13 11 10 16 16 N 1.31516 * 119.99562 * 186.42622 * 15 13 11 17 17 Si 1.86798 * 120.00179 * 6.42065 * 15 13 11 18 18 H 1.48506 * 109.47092 * 84.90353 * 17 15 13 19 19 H 1.48497 * 109.47159 * 204.90271 * 17 15 13 20 20 H 1.48500 * 109.47244 * 324.90724 * 17 15 13 21 21 C 1.52995 * 109.46738 * 299.99725 * 11 10 9 22 22 C 1.46954 * 110.87892 * 59.31794 * 5 4 3 23 23 C 1.46947 * 111.00197 * 123.80062 * 2 1 3 24 24 H 1.08995 * 109.47071 * 59.99558 * 1 2 3 25 25 H 1.08992 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46844 * 299.99976 * 1 2 3 27 27 H 1.08997 * 109.49170 * 63.22465 * 3 2 1 28 28 H 1.08999 * 109.49287 * 303.15844 * 3 2 1 29 29 H 1.08997 * 109.48762 * 181.63290 * 4 3 2 30 30 H 1.08993 * 109.50782 * 61.57632 * 4 3 2 31 31 H 1.08997 * 109.47502 * 59.99427 * 8 6 5 32 32 H 1.09001 * 109.46938 * 299.99747 * 8 6 5 33 33 H 1.09000 * 109.47441 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47042 * 59.99690 * 9 8 6 35 35 H 1.08992 * 109.47311 * 299.99646 * 10 9 8 36 36 H 1.09006 * 109.46915 * 179.97438 * 10 9 8 37 37 H 0.97000 * 119.99558 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47143 * 180.02562 * 21 11 10 39 39 H 1.09005 * 109.47203 * 300.00215 * 21 11 10 40 40 H 1.09010 * 109.48878 * 60.65038 * 22 5 4 41 41 H 1.08999 * 109.49075 * 180.71174 * 22 5 4 42 42 H 1.09007 * 109.49137 * 296.77877 * 23 2 1 43 43 H 1.09000 * 109.49245 * 56.82316 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3292 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5192 0.5660 1.0596 7 1 5.8825 0.1123 0.1375 8 6 6.0291 2.0053 1.1552 9 6 7.5591 2.0053 1.1557 10 6 8.0687 1.2030 2.3547 11 6 7.5587 -0.2364 2.2591 12 1 7.9221 -0.8081 3.1131 13 6 8.0615 -0.8638 0.9845 14 1 7.5206 -0.7185 0.0611 15 6 9.2121 -1.6234 0.9972 16 7 9.7207 -2.0654 -0.1322 17 14 10.0486 -2.0246 2.6186 18 1 9.4157 -3.2269 3.2179 19 1 11.4897 -2.2910 2.3794 20 1 9.9052 -0.8748 3.5474 21 6 6.0288 -0.2363 2.2586 22 6 3.5235 -0.8060 1.0597 23 6 1.9957 -0.7632 1.1400 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6938 1.8774 0.9173 28 1 1.6013 1.9129 -0.8602 29 1 3.9177 2.3449 -0.0513 30 1 3.8256 0.8483 -1.0107 31 1 5.6658 2.4590 2.0772 32 1 5.6657 2.5770 0.3012 33 1 7.9225 3.0308 1.2234 34 1 7.9228 1.5514 0.2338 35 1 7.7051 1.6569 3.2766 36 1 9.1588 1.2027 2.3548 37 1 10.5304 -2.5995 -0.1233 38 1 5.6654 -1.2618 2.1909 39 1 5.6651 0.2175 3.1805 40 1 3.8254 -1.3114 0.1422 41 1 3.9179 -1.3469 1.9199 42 1 1.6938 -0.2820 2.0704 43 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:12 Heat of formation + Delta-G solvation = -0.913594 kcal Electronic energy + Delta-G solvation = -19981.157128 eV Core-core repulsion = 17253.503207 eV Total energy + Delta-G solvation = -2727.653920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.47715 -37.56431 -34.62149 -32.31291 -31.07448 -29.83858 -29.56463 -26.75746 -25.00281 -23.58594 -23.40231 -21.02483 -20.63840 -19.47958 -18.67933 -16.47953 -16.03059 -15.03531 -14.88742 -14.62398 -14.49055 -14.26261 -13.87803 -13.67384 -13.04069 -12.66347 -12.48724 -12.41490 -12.08465 -12.05173 -11.94437 -11.51328 -11.18567 -11.05015 -10.89625 -10.63042 -10.49083 -10.33693 -10.15072 -10.01629 -9.71987 -9.27625 -8.97154 -8.74963 -8.42047 -8.35072 -7.80863 -6.02230 -3.99615 3.31568 3.40318 3.42378 3.95126 4.26335 4.46800 5.02058 5.04629 5.21762 5.29561 5.33525 5.42856 5.56262 5.56973 5.61196 5.68404 5.72350 5.74514 5.88840 5.92718 6.12058 6.15003 6.23727 6.27229 6.32226 6.41305 6.44641 6.52209 6.60075 6.67901 6.84552 6.94923 7.02509 7.03142 7.16428 7.24462 7.29396 7.46746 7.58279 7.69450 7.87989 8.58955 9.03087 9.62214 11.10812 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031316 B = 0.005803 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.890149 B = 4824.137463 C = 5171.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.060 3.940 4 C 0.053 3.947 5 N -0.540 5.540 6 C 0.092 3.908 7 H 0.057 0.943 8 C -0.101 4.101 9 C -0.107 4.107 10 C -0.107 4.107 11 C 0.010 3.990 12 H 0.030 0.970 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.903 5.903 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.292 1.292 20 H -0.266 1.266 21 C -0.091 4.091 22 C 0.054 3.946 23 C 0.059 3.941 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.086 0.914 42 H 0.038 0.962 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 6.161 2.487 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.075 4.075 5 N -0.265 5.265 6 C -0.015 4.015 7 H 0.075 0.925 8 C -0.139 4.139 9 C -0.145 4.145 10 C -0.145 4.145 11 C -0.010 4.010 12 H 0.049 0.951 13 C -0.540 4.540 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.542 5.542 17 Si 0.703 3.297 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.190 1.190 21 C -0.129 4.129 22 C -0.074 4.074 23 C -0.069 4.069 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.198 6.049 2.401 15.618 hybrid contribution 0.534 -0.331 0.755 0.983 sum -13.663 5.718 3.156 15.144 Atomic orbital electron populations 1.22325 0.87715 1.01813 1.00337 1.62151 1.07332 1.14256 1.43389 1.22163 0.95316 0.88974 1.00397 1.22161 0.93353 0.99175 0.92859 1.62270 1.09363 1.13205 1.41672 1.21644 0.83770 0.96219 0.99847 0.92519 1.21513 0.96381 0.95601 1.00423 1.21375 0.94042 0.97978 1.01068 1.21681 0.99570 0.97955 0.95283 1.19187 0.91387 0.92843 0.97571 0.95147 1.21018 1.08888 1.29846 0.94236 0.90705 1.25069 0.96675 0.95703 0.95755 1.69919 1.21670 1.36875 1.25728 0.86902 0.78484 0.79164 0.85188 1.20420 1.21866 1.19043 1.21554 0.97794 0.98142 0.95428 1.22173 0.92948 0.90508 1.01809 1.22195 0.95482 0.97841 0.91391 0.91611 0.91563 0.95884 0.94310 0.90853 0.90168 0.94245 0.92581 0.93403 0.94144 0.90614 0.95256 0.93346 0.92866 0.92851 0.94024 0.93983 0.89606 0.94323 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.07 0.58 0.84 16 2 N -0.55 -7.06 4.97 -242.76 -1.21 -8.27 16 3 C 0.06 0.75 5.62 -3.76 -0.02 0.73 16 4 C 0.05 0.77 5.32 -3.76 -0.02 0.75 16 5 N -0.54 -8.82 4.58 -226.49 -1.04 -9.86 16 6 C 0.09 1.72 1.72 -67.71 -0.12 1.60 16 7 H 0.06 1.24 6.30 -51.93 -0.33 0.92 16 8 C -0.10 -1.76 4.97 -26.73 -0.13 -1.89 16 9 C -0.11 -2.04 5.70 -26.73 -0.15 -2.20 16 10 C -0.11 -2.23 5.44 -26.73 -0.15 -2.38 16 11 C 0.01 0.22 2.28 -91.77 -0.21 0.01 16 12 H 0.03 0.72 5.22 -51.93 -0.27 0.45 16 13 C -0.50 -13.45 7.31 -34.44 -0.25 -13.70 16 14 H 0.07 2.18 6.26 -52.49 -0.33 1.85 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 17 Si 0.87 21.47 27.04 -169.99 -4.60 16.87 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.27 -6.26 6.76 56.52 0.38 -5.88 16 21 C -0.09 -1.82 4.37 -26.73 -0.12 -1.94 16 22 C 0.05 0.85 5.23 -3.77 -0.02 0.83 16 23 C 0.06 0.78 5.62 -3.77 -0.02 0.76 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.10 6.14 -51.93 -0.32 0.78 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.76 6.34 -51.93 -0.33 0.43 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.65 7.17 -51.93 -0.37 1.27 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.05 1.08 6.28 -51.93 -0.33 0.75 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.09 1.36 6.06 -51.93 -0.31 1.04 16 42 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -28.86 312.20 -9.75 -38.61 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.66 Total: -0.81 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.73 Total: -14.75 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -1.47 Total: -44.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.60 Total: 16.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.86 -9.75 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.696 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds