Wall clock time and date at job start Mon Mar 30 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46957 * 110.99730 * 2 1 4 4 C 1.53054 * 109.36429 * 183.19196 * 3 2 1 5 5 N 1.46961 * 109.36319 * 301.59870 * 4 3 2 6 6 C 1.46897 * 110.99815 * 183.18804 * 5 4 3 7 7 H 1.08997 * 109.47319 * 299.99548 * 6 5 4 8 8 C 1.52996 * 109.47283 * 60.00233 * 6 5 4 9 9 C 1.53001 * 109.47279 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46985 * 299.99771 * 9 8 6 11 11 C 1.53008 * 109.47055 * 60.00229 * 10 9 8 12 12 H 1.09001 * 109.47068 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47077 * 59.99534 * 11 10 9 14 14 H 1.07993 * 120.00262 * 275.11981 * 13 11 10 15 15 C 1.37880 * 119.99660 * 95.12562 * 13 11 10 16 16 N 1.31516 * 119.99562 * 186.42622 * 15 13 11 17 17 Si 1.86798 * 120.00179 * 6.42065 * 15 13 11 18 18 H 1.48506 * 109.47092 * 84.90353 * 17 15 13 19 19 H 1.48497 * 109.47159 * 204.90271 * 17 15 13 20 20 H 1.48500 * 109.47244 * 324.90724 * 17 15 13 21 21 C 1.52995 * 109.46738 * 299.99725 * 11 10 9 22 22 C 1.46954 * 110.87892 * 59.31794 * 5 4 3 23 23 C 1.46947 * 111.00197 * 123.80062 * 2 1 3 24 24 H 1.08995 * 109.47071 * 59.99558 * 1 2 3 25 25 H 1.08992 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46844 * 299.99976 * 1 2 3 27 27 H 1.08997 * 109.49170 * 63.22465 * 3 2 1 28 28 H 1.08999 * 109.49287 * 303.15844 * 3 2 1 29 29 H 1.08997 * 109.48762 * 181.63290 * 4 3 2 30 30 H 1.08993 * 109.50782 * 61.57632 * 4 3 2 31 31 H 1.08997 * 109.47502 * 59.99427 * 8 6 5 32 32 H 1.09001 * 109.46938 * 299.99747 * 8 6 5 33 33 H 1.09000 * 109.47441 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47042 * 59.99690 * 9 8 6 35 35 H 1.08992 * 109.47311 * 299.99646 * 10 9 8 36 36 H 1.09006 * 109.46915 * 179.97438 * 10 9 8 37 37 H 0.97000 * 119.99558 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47143 * 180.02562 * 21 11 10 39 39 H 1.09005 * 109.47203 * 300.00215 * 21 11 10 40 40 H 1.09010 * 109.48878 * 60.65038 * 22 5 4 41 41 H 1.08999 * 109.49075 * 180.71174 * 22 5 4 42 42 H 1.09007 * 109.49137 * 296.77877 * 23 2 1 43 43 H 1.09000 * 109.49245 * 56.82316 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3292 -0.0804 5 7 4.0502 0.5659 1.0597 6 6 5.5192 0.5660 1.0596 7 1 5.8825 0.1123 0.1375 8 6 6.0291 2.0053 1.1552 9 6 7.5591 2.0053 1.1557 10 6 8.0687 1.2030 2.3547 11 6 7.5587 -0.2364 2.2591 12 1 7.9221 -0.8081 3.1131 13 6 8.0615 -0.8638 0.9845 14 1 7.5206 -0.7185 0.0611 15 6 9.2121 -1.6234 0.9972 16 7 9.7207 -2.0654 -0.1322 17 14 10.0486 -2.0246 2.6186 18 1 9.4157 -3.2269 3.2179 19 1 11.4897 -2.2910 2.3794 20 1 9.9052 -0.8748 3.5474 21 6 6.0288 -0.2363 2.2586 22 6 3.5235 -0.8060 1.0597 23 6 1.9957 -0.7632 1.1400 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6938 1.8774 0.9173 28 1 1.6013 1.9129 -0.8602 29 1 3.9177 2.3449 -0.0513 30 1 3.8256 0.8483 -1.0107 31 1 5.6658 2.4590 2.0772 32 1 5.6657 2.5770 0.3012 33 1 7.9225 3.0308 1.2234 34 1 7.9228 1.5514 0.2338 35 1 7.7051 1.6569 3.2766 36 1 9.1588 1.2027 2.3548 37 1 10.5304 -2.5995 -0.1233 38 1 5.6654 -1.2618 2.1909 39 1 5.6651 0.2175 3.1805 40 1 3.8254 -1.3114 0.1422 41 1 3.9179 -1.3469 1.9199 42 1 1.6938 -0.2820 2.0704 43 1 1.6011 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:11 Heat of formation + Delta-G solvation = -20.575195 kcal Electronic energy + Delta-G solvation = -19982.009719 eV Core-core repulsion = 17253.503207 eV Total energy + Delta-G solvation = -2728.506511 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80078 -38.94269 -35.97593 -34.31662 -32.41234 -31.38914 -30.92965 -27.93040 -26.94900 -24.74573 -24.63557 -22.52049 -22.14763 -20.72016 -20.51804 -18.28088 -17.48147 -16.31214 -16.06428 -16.00358 -15.80432 -15.72726 -15.38122 -15.03167 -14.58289 -14.45435 -14.16669 -13.68656 -13.60538 -13.19575 -13.03968 -12.98718 -12.77227 -12.43345 -12.25057 -12.06511 -12.03363 -11.85772 -11.70262 -11.62184 -11.52641 -11.00292 -10.71914 -10.62607 -10.40117 -9.36093 -9.18914 -8.21005 -6.21407 1.36216 1.37699 1.48071 2.39685 2.92210 3.01687 3.16160 3.91355 3.93701 4.05366 4.11313 4.25175 4.32238 4.40226 4.43358 4.55257 4.61265 4.64755 4.68840 4.71728 4.82585 4.84049 4.85921 4.90661 4.93914 4.98037 4.98630 5.02093 5.07014 5.13164 5.26287 5.35056 5.49649 5.53974 5.62307 5.77479 5.89760 6.03039 6.06549 6.23413 6.27385 6.43589 6.85506 7.42851 8.95538 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.031316 B = 0.005803 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.890149 B = 4824.137463 C = 5171.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.566 5.566 3 C 0.066 3.934 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.099 3.901 7 H 0.010 0.990 8 C -0.093 4.093 9 C -0.104 4.104 10 C -0.106 4.106 11 C 0.004 3.996 12 H 0.029 0.971 13 C -0.490 4.490 14 H 0.035 0.965 15 C 0.006 3.994 16 N -0.956 5.956 17 Si 0.937 3.063 18 H -0.271 1.271 19 H -0.294 1.294 20 H -0.245 1.245 21 C -0.086 4.086 22 C 0.053 3.947 23 C 0.068 3.932 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.013 0.987 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 7.812 4.661 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.291 5.291 3 C -0.062 4.062 4 C -0.077 4.077 5 N -0.257 5.257 6 C -0.009 4.009 7 H 0.028 0.972 8 C -0.131 4.131 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.016 4.016 12 H 0.047 0.953 13 C -0.528 4.528 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.597 5.597 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.221 1.221 20 H -0.168 1.168 21 C -0.124 4.124 22 C -0.076 4.076 23 C -0.060 4.060 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.032 0.968 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.087 7.715 4.588 18.422 hybrid contribution 1.043 -0.837 -0.022 1.337 sum -15.044 6.879 4.565 17.160 Atomic orbital electron populations 1.22370 0.85607 1.02697 1.01271 1.62144 1.09303 1.14399 1.43293 1.22129 0.93335 0.89197 1.01551 1.22266 0.95287 0.99076 0.91110 1.62332 1.07494 1.13540 1.42289 1.21438 0.85500 0.96788 0.97125 0.97156 1.21452 0.94884 0.94661 1.02095 1.21323 0.95437 0.98928 0.98505 1.21627 0.98741 0.96691 0.97380 1.19242 0.93389 0.93975 0.94982 0.95287 1.21240 1.07912 1.28930 0.94703 0.94676 1.25908 0.97797 0.96092 0.99157 1.70080 1.22625 1.38757 1.28263 0.85889 0.77041 0.79715 0.81155 1.19671 1.22117 1.16823 1.21445 0.95743 0.98200 0.96969 1.22200 0.95228 0.89984 1.00176 1.22094 0.93133 0.98920 0.91897 0.90473 0.90804 0.95056 0.93702 0.88932 0.88966 0.96508 0.90553 0.91843 0.91281 0.94516 0.92112 0.94811 0.93047 0.93907 0.91671 0.96841 0.90009 0.93705 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.60 127.69 1.23 1.71 16 2 N -0.57 -13.48 4.97 -921.95 -4.58 -18.06 16 3 C 0.07 1.50 5.62 86.31 0.49 1.99 16 4 C 0.05 1.43 5.32 86.31 0.46 1.89 16 5 N -0.53 -16.93 4.58 -870.47 -3.98 -20.91 16 6 C 0.10 3.71 1.72 44.92 0.08 3.79 16 7 H 0.01 0.49 6.30 -2.39 -0.02 0.47 16 8 C -0.09 -3.07 4.97 30.59 0.15 -2.91 16 9 C -0.10 -3.87 5.70 30.59 0.17 -3.69 16 10 C -0.11 -4.25 5.44 30.60 0.17 -4.09 16 11 C 0.00 0.16 2.28 -11.54 -0.03 0.13 16 12 H 0.03 1.32 5.22 -2.39 -0.01 1.30 16 13 C -0.49 -27.24 7.31 25.60 0.19 -27.05 16 14 H 0.04 2.20 6.26 -2.91 -0.02 2.18 16 15 C 0.01 0.35 5.47 84.66 0.46 0.81 16 16 N -0.96 -60.33 13.96 21.45 0.30 -60.03 16 17 Si 0.94 44.63 27.04 68.60 1.85 46.48 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 20 H -0.24 -10.73 6.76 99.48 0.67 -10.06 16 21 C -0.09 -3.36 4.37 30.59 0.13 -3.23 16 22 C 0.05 1.65 5.23 86.31 0.45 2.10 16 23 C 0.07 1.67 5.62 86.31 0.49 2.16 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 26 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.35 6.14 -2.39 -0.01 2.33 16 30 H 0.02 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.89 6.34 -2.39 -0.02 1.88 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.04 1.64 7.17 -2.38 -0.02 1.62 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.03 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.04 1.74 6.28 -2.39 -0.01 1.73 16 39 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.08 2.59 6.06 -2.39 -0.01 2.58 16 42 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 Total: -1.00 -64.71 312.20 -1.05 -65.77 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.92 Total: 13.16 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 4.43 Total: -26.40 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -8.26 Total: -99.01 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Total: -64.71 -1.05 -65.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.192 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds