Wall clock time and date at job start Mon Mar 30 2020 04:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46957 * 110.99847 * 2 1 4 4 C 1.53052 * 109.36249 * 183.18818 * 3 2 1 5 5 N 1.46957 * 109.36522 * 301.59692 * 4 3 2 6 6 C 1.46897 * 111.00475 * 183.18500 * 5 4 3 7 7 H 1.08996 * 109.47600 * 300.00619 * 6 5 4 8 8 C 1.53002 * 109.46883 * 60.00066 * 6 5 4 9 9 C 1.52997 * 109.47415 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 6 11 11 C 1.52999 * 109.46626 * 59.99702 * 10 9 8 12 12 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 14 14 H 1.07990 * 120.00048 * 120.00449 * 13 11 10 15 15 C 1.37879 * 119.99661 * 300.00357 * 13 11 10 16 16 N 1.31510 * 120.00409 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99651 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47285 * 60.00175 * 17 15 13 19 19 H 1.48508 * 109.47183 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47196 * 299.99614 * 17 15 13 21 21 C 1.52996 * 109.47593 * 180.02562 * 6 5 4 22 22 C 1.46957 * 110.87953 * 59.32311 * 5 4 3 23 23 C 1.46957 * 111.00046 * 123.79764 * 2 1 3 24 24 H 1.09003 * 109.47009 * 59.99524 * 1 2 3 25 25 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47215 * 300.00489 * 1 2 3 27 27 H 1.09000 * 109.49245 * 63.22544 * 3 2 1 28 28 H 1.08998 * 109.50934 * 303.16484 * 3 2 1 29 29 H 1.08997 * 109.48991 * 181.63161 * 4 3 2 30 30 H 1.09003 * 109.49084 * 61.56386 * 4 3 2 31 31 H 1.09000 * 109.46986 * 60.00080 * 8 6 5 32 32 H 1.09001 * 109.47601 * 300.00803 * 8 6 5 33 33 H 1.09001 * 109.46922 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47140 * 59.99976 * 9 8 6 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 37 37 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47054 * 300.00396 * 21 6 5 39 39 H 1.09001 * 109.46997 * 60.00129 * 21 6 5 40 40 H 1.08997 * 109.49517 * 60.64569 * 22 5 4 41 41 H 1.09000 * 109.49418 * 180.71388 * 22 5 4 42 42 H 1.09003 * 109.48739 * 296.78039 * 23 2 1 43 43 H 1.08999 * 109.48586 * 56.82168 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5658 1.0598 7 1 5.8824 0.1121 0.1378 8 6 6.0291 2.0051 1.1554 9 6 7.5591 2.0052 1.1548 10 6 8.0696 1.2026 2.3533 11 6 7.5595 -0.2367 2.2576 12 1 7.9225 -0.6903 1.3354 13 6 8.0618 -1.0271 3.4384 14 1 7.3600 -1.4838 4.1204 15 6 9.4174 -1.1673 3.6477 16 7 10.2720 -0.6117 2.8169 17 14 10.0399 -2.1464 5.1117 18 1 9.5449 -3.5434 5.0195 19 1 11.5250 -2.1460 5.1120 20 1 9.5451 -1.5277 6.3676 21 6 6.0290 -0.2371 2.2582 22 6 3.5235 -0.8061 1.0598 23 6 1.9956 -0.7632 1.1401 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6938 1.8774 0.9174 28 1 1.6013 1.9132 -0.8600 29 1 3.9178 2.3448 -0.0512 30 1 3.8253 0.8479 -1.0106 31 1 5.6658 2.4589 2.0774 32 1 5.6658 2.5769 0.3015 33 1 7.9224 3.0306 1.2233 34 1 7.9221 1.5515 0.2325 35 1 9.1595 1.2030 2.3531 36 1 7.7066 1.6562 3.2755 37 1 11.2257 -0.7099 2.9644 38 1 5.6657 0.2162 3.1804 39 1 5.6657 -1.2625 2.1897 40 1 3.8253 -1.3115 0.1425 41 1 3.9177 -1.3470 1.9200 42 1 1.6937 -0.2820 2.0704 43 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259855774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:18 Heat of formation + Delta-G solvation = -4.814439 kcal Electronic energy + Delta-G solvation = -19700.483505 eV Core-core repulsion = 16972.660431 eV Total energy + Delta-G solvation = -2727.823074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.49010 -37.40235 -34.64130 -32.53050 -31.10139 -29.67828 -29.35254 -26.67828 -24.94203 -23.61018 -23.38160 -20.90819 -20.51684 -19.53901 -18.67053 -16.61375 -15.80912 -15.09525 -14.91467 -14.70489 -14.49292 -14.24962 -13.98383 -13.63059 -13.09415 -12.64110 -12.54466 -12.33721 -12.10946 -11.97774 -11.64936 -11.35012 -11.15937 -10.95779 -10.87067 -10.61868 -10.45320 -10.37534 -10.21727 -9.90409 -9.72579 -9.27399 -8.94972 -8.56491 -8.42784 -8.23783 -7.95187 -5.93213 -3.99255 3.34745 3.39271 3.42034 3.89328 4.17041 4.48163 4.95266 4.99464 5.16054 5.29113 5.35548 5.36117 5.50040 5.51363 5.56645 5.61018 5.68317 5.70117 5.85729 5.92652 6.01395 6.09800 6.12367 6.20591 6.35404 6.43107 6.56184 6.65546 6.74703 6.85861 6.89373 6.96911 6.98604 7.18836 7.31075 7.45711 7.54526 7.59453 7.80849 8.08106 8.22052 8.52567 9.04562 9.64985 11.12314 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.005084 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.404019 B = 5506.014102 C = 6164.295221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.059 3.941 4 C 0.053 3.947 5 N -0.537 5.537 6 C 0.088 3.912 7 H 0.034 0.966 8 C -0.103 4.103 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.052 3.948 12 H 0.022 0.978 13 C -0.511 4.511 14 H 0.053 0.947 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.098 4.098 22 C 0.053 3.947 23 C 0.058 3.942 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.259 0.741 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 3.645 -5.606 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.070 4.070 4 C -0.075 4.075 5 N -0.262 5.262 6 C -0.020 4.020 7 H 0.052 0.948 8 C -0.141 4.141 9 C -0.156 4.156 10 C -0.148 4.148 11 C 0.033 3.967 12 H 0.040 0.960 13 C -0.549 4.549 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.135 4.135 22 C -0.075 4.075 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.734 3.660 -5.636 16.194 hybrid contribution 0.342 -0.517 0.753 0.976 sum -14.392 3.143 -4.883 15.519 Atomic orbital electron populations 1.22329 0.87642 1.01849 1.00415 1.62173 1.07427 1.14235 1.43364 1.22167 0.95195 0.89042 1.00554 1.22177 0.93538 0.99242 0.92580 1.62245 1.08995 1.13249 1.41665 1.21758 0.84338 0.96957 0.98908 0.94841 1.21565 0.96644 0.95194 1.00719 1.21618 0.93842 0.99348 1.00801 1.21614 1.03506 0.96022 0.93638 1.18631 0.88221 0.92885 0.97004 0.95974 1.21170 0.91462 1.31860 1.10447 0.92884 1.24953 0.97026 0.95704 0.96267 1.69870 1.01930 1.44456 1.36740 0.86714 0.77554 0.80683 0.83358 1.20380 1.21381 1.20352 1.21740 0.99158 0.97177 0.95473 1.22199 0.93228 0.90436 1.01621 1.22197 0.95317 0.97927 0.91558 0.91603 0.91535 0.95772 0.94143 0.90807 0.90067 0.94502 0.91909 0.93714 0.93756 0.93177 0.89207 0.94792 0.93082 0.92647 0.93545 0.94392 0.89287 0.94089 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.60 60.06 0.58 0.83 16 2 N -0.55 -6.72 4.97 -242.75 -1.21 -7.93 16 3 C 0.06 0.71 5.62 -3.77 -0.02 0.69 16 4 C 0.05 0.73 5.32 -3.77 -0.02 0.71 16 5 N -0.54 -8.55 4.58 -226.49 -1.04 -9.59 16 6 C 0.09 1.59 1.94 -67.71 -0.13 1.46 16 7 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 8 C -0.10 -1.80 4.98 -26.73 -0.13 -1.93 16 9 C -0.12 -2.29 5.92 -26.73 -0.16 -2.45 16 10 C -0.11 -2.59 4.98 -26.73 -0.13 -2.72 16 11 C 0.05 1.28 2.10 -91.75 -0.19 1.09 16 12 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 13 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.10 -2.05 4.08 -26.71 -0.11 -2.16 16 22 C 0.05 0.80 5.23 -3.77 -0.02 0.78 16 23 C 0.06 0.74 5.62 -3.77 -0.02 0.72 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.07 6.14 -51.93 -0.32 0.75 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.96 6.28 -51.93 -0.33 0.64 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.39 6.06 -51.93 -0.31 1.08 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -28.17 318.16 -10.50 -38.67 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.91 Total: -1.69 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.75 Total: -15.74 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: -1.62 Total: -42.39 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.17 -10.50 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.853 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds