Wall clock time and date at job start Mon Mar 30 2020 04:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46957 * 110.99847 * 2 1 4 4 C 1.53052 * 109.36249 * 183.18818 * 3 2 1 5 5 N 1.46957 * 109.36522 * 301.59692 * 4 3 2 6 6 C 1.46897 * 111.00475 * 183.18500 * 5 4 3 7 7 H 1.08996 * 109.47600 * 300.00619 * 6 5 4 8 8 C 1.53002 * 109.46883 * 60.00066 * 6 5 4 9 9 C 1.52997 * 109.47415 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.47164 * 300.00027 * 9 8 6 11 11 C 1.52999 * 109.46626 * 59.99702 * 10 9 8 12 12 H 1.09000 * 109.47160 * 60.00369 * 11 10 9 13 13 C 1.50706 * 109.46957 * 180.02562 * 11 10 9 14 14 H 1.07990 * 120.00048 * 120.00449 * 13 11 10 15 15 C 1.37879 * 119.99661 * 300.00357 * 13 11 10 16 16 N 1.31510 * 120.00409 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99651 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47285 * 60.00175 * 17 15 13 19 19 H 1.48508 * 109.47183 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47196 * 299.99614 * 17 15 13 21 21 C 1.52996 * 109.47593 * 180.02562 * 6 5 4 22 22 C 1.46957 * 110.87953 * 59.32311 * 5 4 3 23 23 C 1.46957 * 111.00046 * 123.79764 * 2 1 3 24 24 H 1.09003 * 109.47009 * 59.99524 * 1 2 3 25 25 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47215 * 300.00489 * 1 2 3 27 27 H 1.09000 * 109.49245 * 63.22544 * 3 2 1 28 28 H 1.08998 * 109.50934 * 303.16484 * 3 2 1 29 29 H 1.08997 * 109.48991 * 181.63161 * 4 3 2 30 30 H 1.09003 * 109.49084 * 61.56386 * 4 3 2 31 31 H 1.09000 * 109.46986 * 60.00080 * 8 6 5 32 32 H 1.09001 * 109.47601 * 300.00803 * 8 6 5 33 33 H 1.09001 * 109.46922 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47140 * 59.99976 * 9 8 6 35 35 H 1.08993 * 109.46955 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47050 * 300.00004 * 10 9 8 37 37 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.47054 * 300.00396 * 21 6 5 39 39 H 1.09001 * 109.46997 * 60.00129 * 21 6 5 40 40 H 1.08997 * 109.49517 * 60.64569 * 22 5 4 41 41 H 1.09000 * 109.49418 * 180.71388 * 22 5 4 42 42 H 1.09003 * 109.48739 * 296.78039 * 23 2 1 43 43 H 1.08999 * 109.48586 * 56.82168 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5658 1.0598 7 1 5.8824 0.1121 0.1378 8 6 6.0291 2.0051 1.1554 9 6 7.5591 2.0052 1.1548 10 6 8.0696 1.2026 2.3533 11 6 7.5595 -0.2367 2.2576 12 1 7.9225 -0.6903 1.3354 13 6 8.0618 -1.0271 3.4384 14 1 7.3600 -1.4838 4.1204 15 6 9.4174 -1.1673 3.6477 16 7 10.2720 -0.6117 2.8169 17 14 10.0399 -2.1464 5.1117 18 1 9.5449 -3.5434 5.0195 19 1 11.5250 -2.1460 5.1120 20 1 9.5451 -1.5277 6.3676 21 6 6.0290 -0.2371 2.2582 22 6 3.5235 -0.8061 1.0598 23 6 1.9956 -0.7632 1.1401 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6938 1.8774 0.9174 28 1 1.6013 1.9132 -0.8600 29 1 3.9178 2.3448 -0.0512 30 1 3.8253 0.8479 -1.0106 31 1 5.6658 2.4589 2.0774 32 1 5.6658 2.5769 0.3015 33 1 7.9224 3.0306 1.2233 34 1 7.9221 1.5515 0.2325 35 1 9.1595 1.2030 2.3531 36 1 7.7066 1.6562 3.2755 37 1 11.2257 -0.7099 2.9644 38 1 5.6657 0.2162 3.1804 39 1 5.6657 -1.2625 2.1897 40 1 3.8253 -1.3115 0.1425 41 1 3.9177 -1.3470 1.9200 42 1 1.6937 -0.2820 2.0704 43 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259855774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:17 Heat of formation + Delta-G solvation = -22.621327 kcal Electronic energy + Delta-G solvation = -19701.255669 eV Core-core repulsion = 16972.660431 eV Total energy + Delta-G solvation = -2728.595238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74801 -38.80600 -36.06236 -34.40238 -32.35797 -31.27429 -30.78968 -27.87514 -26.87196 -24.72091 -24.59246 -22.44452 -22.14124 -20.69402 -20.39673 -18.44585 -17.29464 -16.52729 -16.04559 -15.96031 -15.79086 -15.63182 -15.32116 -14.95068 -14.73665 -14.35457 -14.08092 -13.62773 -13.34198 -13.15534 -13.02319 -12.82046 -12.70667 -12.51365 -12.22610 -12.21914 -12.00942 -11.89644 -11.68621 -11.58067 -11.45079 -11.16006 -10.77775 -10.48885 -10.29246 -9.38595 -9.20235 -8.06065 -6.20174 1.41647 1.42827 1.50394 2.44115 2.90325 3.01087 3.20045 3.90852 3.92439 4.01885 4.11264 4.25463 4.35177 4.41471 4.43753 4.50081 4.60112 4.64475 4.69742 4.73956 4.78558 4.84417 4.87103 4.93160 4.97416 5.01188 5.02350 5.06863 5.15035 5.15653 5.31701 5.44124 5.49816 5.63532 5.71796 5.99281 6.00935 6.06281 6.17590 6.23553 6.29090 6.43426 6.91679 7.47524 8.97699 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.005084 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.404019 B = 5506.014102 C = 6164.295221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.063 3.937 4 C 0.052 3.948 5 N -0.539 5.539 6 C 0.097 3.903 7 H 0.020 0.980 8 C -0.095 4.095 9 C -0.111 4.111 10 C -0.103 4.103 11 C 0.049 3.951 12 H -0.012 1.012 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.951 3.049 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.085 4.085 22 C 0.052 3.948 23 C 0.065 3.935 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.260 0.740 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.027 0.973 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.760 4.335 -5.818 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.065 4.065 4 C -0.076 4.076 5 N -0.264 5.264 6 C -0.011 4.011 7 H 0.038 0.962 8 C -0.132 4.132 9 C -0.149 4.149 10 C -0.141 4.141 11 C 0.030 3.970 12 H 0.007 0.993 13 C -0.573 4.573 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.777 3.223 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.197 1.197 21 C -0.123 4.123 22 C -0.076 4.076 23 C -0.063 4.063 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.591 4.352 -5.853 18.124 hybrid contribution 0.907 -0.759 0.793 1.424 sum -15.684 3.593 -5.059 16.867 Atomic orbital electron populations 1.22385 0.85742 1.02738 1.01214 1.62186 1.09185 1.14269 1.42890 1.22162 0.93693 0.89236 1.01446 1.22280 0.95008 0.99130 0.91186 1.62232 1.07164 1.13963 1.43010 1.21522 0.86141 0.96889 0.96574 0.96245 1.21484 0.94772 0.94871 1.02091 1.21519 0.95507 0.99604 0.98274 1.21426 1.01413 0.95947 0.95351 1.18591 0.90792 0.93168 0.94464 0.99345 1.21551 0.91923 1.32489 1.11308 0.93276 1.25716 0.97240 0.96669 0.98883 1.70013 1.02050 1.45326 1.38196 0.85719 0.77039 0.79374 0.80169 1.19773 1.20904 1.19689 1.21509 0.96429 0.97658 0.96658 1.22202 0.95093 0.89804 1.00484 1.22105 0.93380 0.99007 0.91782 0.90251 0.90702 0.95441 0.94360 0.88585 0.89018 0.95212 0.91822 0.90648 0.91606 0.93792 0.92479 0.95488 0.93110 0.93347 0.93960 0.95426 0.90591 0.94446 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.66 16 2 N -0.56 -12.34 4.97 -921.93 -4.58 -16.92 16 3 C 0.06 1.33 5.62 86.31 0.49 1.82 16 4 C 0.05 1.32 5.32 86.31 0.46 1.77 16 5 N -0.54 -16.54 4.58 -870.49 -3.99 -20.53 16 6 C 0.10 3.47 1.94 44.92 0.09 3.56 16 7 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 8 C -0.09 -3.13 4.98 30.59 0.15 -2.98 16 9 C -0.11 -4.25 5.92 30.60 0.18 -4.07 16 10 C -0.10 -4.99 4.98 30.60 0.15 -4.83 16 11 C 0.05 2.51 2.10 -11.52 -0.02 2.49 16 12 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 13 C -0.53 -30.22 8.56 25.60 0.22 -30.00 16 14 H 0.05 2.74 7.74 -2.92 -0.02 2.71 16 15 C 0.01 0.76 5.30 84.66 0.45 1.21 16 16 N -0.92 -53.82 11.32 21.45 0.24 -53.58 16 17 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C -0.08 -3.63 4.08 30.61 0.12 -3.50 16 22 C 0.05 1.54 5.23 86.31 0.45 1.99 16 23 C 0.07 1.56 5.62 86.31 0.49 2.04 16 24 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 26 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.09 2.12 6.14 -2.39 -0.01 2.10 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.08 6.34 -2.39 -0.02 2.07 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 1.81 6.28 -2.39 -0.01 1.79 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 2.40 6.06 -2.39 -0.01 2.38 16 42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 1.86 8.13 -2.39 -0.02 1.84 16 Total: -1.00 -61.36 318.16 -0.90 -62.26 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.94 Total: 11.25 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 4.45 Total: -28.85 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -8.32 Total: -91.03 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -61.36 -0.90 -62.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259855774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.640 kcal (2) G-P(sol) polarization free energy of solvation -61.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds