Wall clock time and date at job start Mon Mar 30 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46850 * 111.00108 * 2 1 4 4 C 1.53041 * 109.52582 * 185.84342 * 3 2 1 5 5 C 1.53120 * 109.27298 * 300.82021 * 4 3 2 6 6 C 1.53123 * 109.16504 * 57.65283 * 5 4 3 7 7 H 1.09003 * 109.49981 * 62.28602 * 6 5 4 8 8 N 1.46897 * 109.50434 * 182.40371 * 6 5 4 9 9 C 1.48527 * 110.99882 * 177.40979 * 8 6 5 10 10 C 1.54938 * 103.22904 * 159.71887 * 9 8 6 11 11 C 1.54594 * 102.91948 * 322.58568 * 10 9 8 12 12 C 1.47902 * 110.99984 * 294.80169 * 8 6 5 13 13 C 1.46844 * 111.00342 * 124.20955 * 2 1 3 14 14 H 1.09000 * 109.45781 * 54.15240 * 13 2 1 15 15 C 1.52999 * 109.46087 * 294.17597 * 13 2 1 16 16 C 1.50700 * 109.47316 * 68.11182 * 15 13 2 17 17 H 1.08007 * 119.99825 * 5.81844 * 16 15 13 18 18 C 1.37871 * 120.00410 * 185.82094 * 16 15 13 19 19 N 1.31517 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00386 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46701 * 59.99955 * 20 18 16 22 22 H 1.48494 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47358 * 300.00640 * 20 18 16 24 24 H 1.09001 * 109.46990 * 307.60772 * 1 2 3 25 25 H 1.09004 * 109.47292 * 67.60437 * 1 2 3 26 26 H 1.08994 * 109.47097 * 187.60897 * 1 2 3 27 27 H 1.08999 * 109.46334 * 305.85388 * 3 2 1 28 28 H 1.08996 * 109.46396 * 65.82651 * 3 2 1 29 29 H 1.08997 * 109.50667 * 60.75704 * 4 3 2 30 30 H 1.08996 * 109.50268 * 180.84146 * 4 3 2 31 31 H 1.09002 * 109.52325 * 177.56314 * 5 4 3 32 32 H 1.09006 * 109.52614 * 297.74515 * 5 4 3 33 33 H 1.08999 * 110.67050 * 278.15563 * 9 8 6 34 34 H 1.09001 * 110.66869 * 41.28347 * 9 8 6 35 35 H 1.09001 * 110.72791 * 204.22316 * 10 9 8 36 36 H 1.09004 * 110.72057 * 80.94297 * 10 9 8 37 37 H 1.08995 * 110.30788 * 263.03793 * 11 10 9 38 38 H 1.09002 * 110.30752 * 140.87218 * 11 10 9 39 39 H 1.08999 * 109.91838 * 333.51635 * 12 8 6 40 40 H 1.09002 * 109.91544 * 94.60540 * 12 8 6 41 41 H 1.08995 * 109.47644 * 308.11142 * 15 13 2 42 42 H 1.09003 * 109.47040 * 188.10500 * 15 13 2 43 43 H 0.97002 * 120.00091 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8715 1.0208 7 1 3.7813 -1.3836 0.0953 8 7 4.0461 -1.6245 2.1663 9 6 3.4370 -2.9772 2.2403 10 6 4.4424 -3.7715 3.1115 11 6 5.8109 -3.2206 2.6493 12 6 5.5022 -1.8450 2.0298 13 6 1.9953 -0.7707 1.1337 14 1 1.5635 -1.7715 1.1241 15 6 1.6264 -0.0690 2.4423 16 6 0.1360 -0.1467 2.6513 17 1 -0.4747 -0.7260 1.9745 18 6 -0.4480 0.5216 3.7063 19 7 0.2955 1.2274 4.5301 20 14 -2.2956 0.4258 3.9649 21 1 -2.6935 -0.9898 4.1725 22 1 -2.6705 1.2260 5.1583 23 1 -2.9915 0.9652 2.7692 24 1 -0.3633 0.6271 0.8141 25 1 -0.3634 0.3915 -0.9502 26 1 -0.3633 -1.0186 0.1361 27 1 1.5635 1.9257 -0.8330 28 1 1.7325 1.8608 0.9375 29 1 3.7814 0.8568 -1.0907 30 1 3.9098 2.3513 -0.1318 31 1 5.1998 0.4714 0.8905 32 1 3.8888 1.0355 1.9560 33 1 2.4606 -2.9335 2.7227 34 1 3.3570 -3.4180 1.2467 35 1 4.3683 -4.8399 2.9090 36 1 4.2815 -3.5664 4.1700 37 1 6.2521 -3.8812 1.9031 38 1 6.4815 -3.1099 3.5015 39 1 5.7813 -1.8412 0.9762 40 1 6.0473 -1.0646 2.5608 41 1 1.9323 0.9760 2.3930 42 1 2.1357 -0.5579 3.2728 43 1 -0.1153 1.6973 5.2726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:58 Heat of formation + Delta-G solvation = 11.722254 kcal Electronic energy + Delta-G solvation = -20509.690967 eV Core-core repulsion = 17782.584978 eV Total energy + Delta-G solvation = -2727.105989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62899 -37.50374 -33.41036 -32.64765 -31.47911 -29.03729 -28.46185 -26.71149 -26.04376 -22.72153 -22.18469 -21.82319 -20.41929 -20.06285 -17.72997 -16.44023 -15.93277 -15.61451 -14.76395 -14.50717 -14.15435 -13.79526 -13.50761 -13.19508 -13.01701 -12.37742 -12.24409 -12.07983 -11.96306 -11.48970 -11.30057 -11.09354 -11.08028 -10.94071 -10.75683 -10.68072 -10.58128 -10.38699 -10.32943 -10.05236 -9.81571 -9.47856 -9.44634 -8.82245 -8.27514 -7.86745 -7.12520 -5.94734 -3.92097 3.32723 3.38354 3.40034 4.30875 4.47705 4.88334 4.95848 5.02835 5.18510 5.39155 5.43162 5.54191 5.56638 5.62211 5.75467 5.85798 5.95301 5.97447 6.05362 6.06304 6.16311 6.24375 6.27878 6.32980 6.39263 6.43162 6.49017 6.54238 6.60627 6.70522 6.74507 6.85761 7.07045 7.21528 7.37528 7.55525 7.75712 7.79126 7.98576 8.11849 8.27696 8.47891 9.11156 9.65566 11.15842 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.008224 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.759311 B = 3403.738901 C = 4180.581767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.048 3.952 4 C -0.109 4.109 5 C -0.110 4.110 6 C 0.091 3.909 7 H 0.032 0.968 8 N -0.500 5.500 9 C 0.037 3.963 10 C -0.123 4.123 11 C -0.129 4.129 12 C 0.037 3.963 13 C 0.091 3.909 14 H 0.064 0.936 15 C 0.002 3.998 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -5.010 -6.587 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.080 4.080 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.018 4.018 7 H 0.050 0.950 8 N -0.224 5.224 9 C -0.091 4.091 10 C -0.161 4.161 11 C -0.168 4.168 12 C -0.091 4.091 13 C -0.018 4.018 14 H 0.082 0.918 15 C -0.036 4.036 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.710 3.290 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.503 -4.808 -6.404 11.680 hybrid contribution -1.155 -0.074 0.199 1.174 sum 7.348 -4.882 -6.205 10.786 Atomic orbital electron populations 1.22754 0.87609 1.02027 1.00246 1.62271 1.08234 1.12739 1.42710 1.22056 0.94088 0.90983 1.00876 1.21498 0.95820 0.99193 0.98268 1.21596 0.98045 0.95413 0.99778 1.21785 0.96169 0.93923 0.89915 0.94991 1.64742 1.02305 1.14563 1.40801 1.23204 0.99315 0.88466 0.98081 1.22477 0.94293 0.98621 1.00755 1.22380 0.97860 0.96252 1.00272 1.22828 0.90741 0.96826 0.98724 1.21747 0.90665 0.97355 0.91996 0.91822 1.19657 0.95625 0.96371 0.91980 1.21517 0.93361 1.29836 1.11254 0.92062 1.24964 0.97368 0.95853 0.96082 1.69969 1.34951 1.32091 1.15955 0.86826 0.86580 0.78032 0.77575 1.20373 1.21443 1.20335 0.90526 0.94671 0.92757 0.92404 0.92759 0.92390 0.92215 0.93303 0.90354 0.89176 0.94461 0.91665 0.90719 0.92138 0.91432 0.94497 0.90817 0.95578 0.94826 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 7.94 60.06 0.48 0.91 16 2 N -0.54 -10.72 4.86 -234.93 -1.14 -11.87 16 3 C 0.05 0.91 5.15 -3.83 -0.02 0.89 16 4 C -0.11 -1.78 6.09 -26.65 -0.16 -1.95 16 5 C -0.11 -1.92 4.92 -26.61 -0.13 -2.05 16 6 C 0.09 1.66 1.50 -67.63 -0.10 1.56 16 7 H 0.03 0.59 7.96 -51.93 -0.41 0.17 16 8 N -0.50 -8.76 4.17 -222.41 -0.93 -9.68 16 9 C 0.04 0.60 5.31 -1.90 -0.01 0.59 16 10 C -0.12 -1.65 7.06 -24.87 -0.18 -1.83 16 11 C -0.13 -1.59 6.93 -25.38 -0.18 -1.76 16 12 C 0.04 0.53 5.60 -2.76 -0.02 0.52 16 13 C 0.09 1.90 1.74 -67.73 -0.12 1.78 16 14 H 0.06 1.39 6.77 -51.93 -0.35 1.04 16 15 C 0.00 0.04 3.61 -27.88 -0.10 -0.06 16 16 C -0.52 -14.01 6.43 -34.44 -0.22 -14.23 16 17 H 0.06 1.60 5.20 -52.48 -0.27 1.33 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.88 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H 0.08 1.77 5.43 -51.93 -0.28 1.49 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.09 7.14 -51.93 -0.37 0.72 16 27 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 28 H 0.05 1.19 6.02 -51.93 -0.31 0.88 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.75 7.44 -51.93 -0.39 0.36 16 32 H 0.08 1.57 6.75 -51.93 -0.35 1.22 16 33 H 0.09 1.66 7.68 -51.93 -0.40 1.26 16 34 H 0.04 0.58 8.02 -51.93 -0.42 0.17 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.04 0.51 7.65 -51.93 -0.40 0.11 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.71 4.82 -51.93 -0.25 0.46 16 42 H 0.03 0.92 7.34 -51.93 -0.38 0.54 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -28.71 310.72 -10.05 -38.76 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.52 Total: 1.48 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -0.85 Total: -14.09 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.33 Total: -47.21 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.71 -10.05 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.481 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds