Wall clock time and date at job start Mon Mar 30 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46850 * 111.00108 * 2 1 4 4 C 1.53041 * 109.52582 * 185.84342 * 3 2 1 5 5 C 1.53120 * 109.27298 * 300.82021 * 4 3 2 6 6 C 1.53123 * 109.16504 * 57.65283 * 5 4 3 7 7 H 1.09003 * 109.49981 * 62.28602 * 6 5 4 8 8 N 1.46897 * 109.50434 * 182.40371 * 6 5 4 9 9 C 1.48527 * 110.99882 * 177.40979 * 8 6 5 10 10 C 1.54938 * 103.22904 * 159.71887 * 9 8 6 11 11 C 1.54594 * 102.91948 * 322.58568 * 10 9 8 12 12 C 1.47902 * 110.99984 * 294.80169 * 8 6 5 13 13 C 1.46844 * 111.00342 * 124.20955 * 2 1 3 14 14 H 1.09000 * 109.45781 * 54.15240 * 13 2 1 15 15 C 1.52999 * 109.46087 * 294.17597 * 13 2 1 16 16 C 1.50700 * 109.47316 * 68.11182 * 15 13 2 17 17 H 1.08007 * 119.99825 * 5.81844 * 16 15 13 18 18 C 1.37871 * 120.00410 * 185.82094 * 16 15 13 19 19 N 1.31517 * 119.99957 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00386 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46701 * 59.99955 * 20 18 16 22 22 H 1.48494 * 109.47388 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47358 * 300.00640 * 20 18 16 24 24 H 1.09001 * 109.46990 * 307.60772 * 1 2 3 25 25 H 1.09004 * 109.47292 * 67.60437 * 1 2 3 26 26 H 1.08994 * 109.47097 * 187.60897 * 1 2 3 27 27 H 1.08999 * 109.46334 * 305.85388 * 3 2 1 28 28 H 1.08996 * 109.46396 * 65.82651 * 3 2 1 29 29 H 1.08997 * 109.50667 * 60.75704 * 4 3 2 30 30 H 1.08996 * 109.50268 * 180.84146 * 4 3 2 31 31 H 1.09002 * 109.52325 * 177.56314 * 5 4 3 32 32 H 1.09006 * 109.52614 * 297.74515 * 5 4 3 33 33 H 1.08999 * 110.67050 * 278.15563 * 9 8 6 34 34 H 1.09001 * 110.66869 * 41.28347 * 9 8 6 35 35 H 1.09001 * 110.72791 * 204.22316 * 10 9 8 36 36 H 1.09004 * 110.72057 * 80.94297 * 10 9 8 37 37 H 1.08995 * 110.30788 * 263.03793 * 11 10 9 38 38 H 1.09002 * 110.30752 * 140.87218 * 11 10 9 39 39 H 1.08999 * 109.91838 * 333.51635 * 12 8 6 40 40 H 1.09002 * 109.91544 * 94.60540 * 12 8 6 41 41 H 1.08995 * 109.47644 * 308.11142 * 15 13 2 42 42 H 1.09003 * 109.47040 * 188.10500 * 15 13 2 43 43 H 0.97002 * 120.00091 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3342 -0.1469 5 6 4.1188 0.5370 1.0143 6 6 3.5181 -0.8715 1.0208 7 1 3.7813 -1.3836 0.0953 8 7 4.0461 -1.6245 2.1663 9 6 3.4370 -2.9772 2.2403 10 6 4.4424 -3.7715 3.1115 11 6 5.8109 -3.2206 2.6493 12 6 5.5022 -1.8450 2.0298 13 6 1.9953 -0.7707 1.1337 14 1 1.5635 -1.7715 1.1241 15 6 1.6264 -0.0690 2.4423 16 6 0.1360 -0.1467 2.6513 17 1 -0.4747 -0.7260 1.9745 18 6 -0.4480 0.5216 3.7063 19 7 0.2955 1.2274 4.5301 20 14 -2.2956 0.4258 3.9649 21 1 -2.6935 -0.9898 4.1725 22 1 -2.6705 1.2260 5.1583 23 1 -2.9915 0.9652 2.7692 24 1 -0.3633 0.6271 0.8141 25 1 -0.3634 0.3915 -0.9502 26 1 -0.3633 -1.0186 0.1361 27 1 1.5635 1.9257 -0.8330 28 1 1.7325 1.8608 0.9375 29 1 3.7814 0.8568 -1.0907 30 1 3.9098 2.3513 -0.1318 31 1 5.1998 0.4714 0.8905 32 1 3.8888 1.0355 1.9560 33 1 2.4606 -2.9335 2.7227 34 1 3.3570 -3.4180 1.2467 35 1 4.3683 -4.8399 2.9090 36 1 4.2815 -3.5664 4.1700 37 1 6.2521 -3.8812 1.9031 38 1 6.4815 -3.1099 3.5015 39 1 5.7813 -1.8412 0.9762 40 1 6.0473 -1.0646 2.5608 41 1 1.9323 0.9760 2.3930 42 1 2.1357 -0.5579 3.2728 43 1 -0.1153 1.6973 5.2726 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:58 Heat of formation + Delta-G solvation = -7.107087 kcal Electronic energy + Delta-G solvation = -20510.507469 eV Core-core repulsion = 17782.584978 eV Total energy + Delta-G solvation = -2727.922490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11653 -38.87114 -35.18218 -34.34592 -33.03087 -30.62430 -29.74183 -28.46208 -27.65397 -24.56034 -23.69259 -23.34974 -21.73803 -21.24254 -19.34604 -18.50477 -17.35953 -16.93217 -16.55038 -16.16500 -15.66830 -15.16573 -15.12857 -14.66167 -14.36221 -14.04204 -13.79544 -13.71070 -13.27467 -13.09919 -12.93763 -12.77753 -12.67489 -12.45133 -12.34138 -12.20596 -12.11985 -11.89307 -11.55862 -11.53656 -11.39127 -11.24635 -11.09122 -10.73793 -10.43854 -9.18442 -8.87338 -8.12056 -6.14973 1.37439 1.38667 1.45874 2.41768 2.96059 3.19470 3.46731 3.76996 3.81730 4.06058 4.08445 4.14169 4.21401 4.39235 4.41122 4.53255 4.65434 4.68591 4.73193 4.77021 4.86580 4.92512 4.96225 4.99252 5.02004 5.10498 5.12149 5.13640 5.17058 5.20944 5.26970 5.38159 5.42611 5.48234 5.65542 5.76003 5.94693 6.11175 6.24327 6.30909 6.41126 6.50300 6.97211 7.46110 8.98952 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.008224 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.759311 B = 3403.738901 C = 4180.581767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.529 5.529 3 C 0.048 3.952 4 C -0.102 4.102 5 C -0.106 4.106 6 C 0.098 3.902 7 H 0.043 0.957 8 N -0.529 5.529 9 C 0.036 3.964 10 C -0.118 4.118 11 C -0.121 4.121 12 C 0.035 3.965 13 C 0.100 3.900 14 H 0.052 0.948 15 C 0.021 3.979 16 C -0.525 4.525 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.946 3.054 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.014 0.986 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.071 0.929 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.292 -5.975 -8.488 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.252 5.252 3 C -0.080 4.080 4 C -0.141 4.141 5 C -0.144 4.144 6 C -0.011 4.011 7 H 0.061 0.939 8 N -0.254 5.254 9 C -0.092 4.092 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.092 4.092 13 C -0.009 4.009 14 H 0.070 0.930 15 C -0.017 4.017 16 C -0.563 4.563 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.572 5.572 20 Si 0.772 3.228 21 H -0.196 1.196 22 H -0.215 1.215 23 H -0.191 1.191 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.032 0.968 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.314 -5.783 -8.322 13.764 hybrid contribution -1.406 0.238 0.783 1.627 sum 7.908 -5.545 -7.539 12.252 Atomic orbital electron populations 1.22648 0.87855 1.01295 1.00470 1.62382 1.08056 1.13396 1.41400 1.22122 0.96344 0.89951 0.99607 1.21495 0.93524 1.00543 0.98495 1.21553 0.99685 0.94628 0.98542 1.21665 0.93908 0.94797 0.90704 0.93908 1.64678 1.04473 1.15364 1.40840 1.23141 0.98564 0.88679 0.98776 1.22457 0.94168 0.99670 0.99352 1.22370 0.97183 0.95142 1.01216 1.22896 0.88433 0.98190 0.99712 1.21562 0.93092 0.96119 0.90109 0.92988 1.19384 0.94388 0.94745 0.93197 1.21901 0.94470 1.28981 1.10903 0.91453 1.25787 1.01999 0.95724 0.96006 1.70122 1.36897 1.33475 1.16728 0.85783 0.81130 0.78231 0.77646 1.19595 1.21497 1.19125 0.93890 0.91763 0.92946 0.90265 0.96815 0.90296 0.90137 0.90703 0.94034 0.92655 0.93606 0.89216 0.92049 0.89781 0.90259 0.93262 0.91041 0.98272 0.98284 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 7.94 127.69 1.01 2.03 16 2 N -0.53 -20.87 4.86 -897.20 -4.36 -25.23 16 3 C 0.05 1.78 5.15 86.33 0.44 2.22 16 4 C -0.10 -3.14 6.09 30.65 0.19 -2.95 16 5 C -0.11 -3.61 4.92 30.68 0.15 -3.46 16 6 C 0.10 3.53 1.50 44.97 0.07 3.60 16 7 H 0.04 1.47 7.96 -2.39 -0.02 1.45 16 8 N -0.53 -18.51 4.17 -857.58 -3.58 -22.09 16 9 C 0.04 1.17 5.31 86.65 0.46 1.63 16 10 C -0.12 -3.01 7.06 31.80 0.22 -2.79 16 11 C -0.12 -2.65 6.93 31.47 0.22 -2.43 16 12 C 0.04 0.95 5.60 86.44 0.48 1.44 16 13 C 0.10 4.25 1.74 44.94 0.08 4.33 16 14 H 0.05 2.32 6.77 -2.39 -0.02 2.30 16 15 C 0.02 1.11 3.61 29.85 0.11 1.21 16 16 C -0.52 -29.18 6.43 25.60 0.16 -29.02 16 17 H 0.07 3.59 5.20 -2.91 -0.02 3.58 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 20 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 24 H 0.04 2.01 5.43 -2.39 -0.01 2.00 16 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 2.07 7.14 -2.39 -0.02 2.06 16 27 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 28 H 0.01 0.62 6.02 -2.39 -0.01 0.61 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.15 7.44 -2.39 -0.02 2.13 16 32 H 0.04 1.72 6.75 -2.38 -0.02 1.70 16 33 H 0.05 2.14 7.68 -2.39 -0.02 2.12 16 34 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.21 7.65 -2.39 -0.02 1.19 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.00 -0.05 4.82 -2.39 -0.01 -0.07 16 42 H 0.00 -0.07 7.34 -2.39 -0.02 -0.09 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -64.54 310.72 -0.60 -65.13 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.96 Total: 16.17 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.06 Total: -23.60 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -7.65 Total: -104.55 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.54 -0.60 -65.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.028 kcal (2) G-P(sol) polarization free energy of solvation -64.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds