Wall clock time and date at job start Mon Mar 30 2020 04:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46846 * 111.00266 * 2 1 4 4 C 1.53045 * 109.52296 * 174.16172 * 3 2 1 5 5 C 1.53114 * 109.27901 * 59.17674 * 4 3 2 6 6 C 1.53118 * 109.16467 * 302.34434 * 5 4 3 7 7 H 1.08998 * 109.50487 * 297.71506 * 6 5 4 8 8 N 1.46897 * 109.50419 * 177.59470 * 6 5 4 9 9 C 1.48534 * 111.00207 * 304.05630 * 8 6 5 10 10 C 1.54936 * 103.22741 * 159.72297 * 9 8 6 11 11 C 1.54591 * 102.92149 * 322.58507 * 10 9 8 12 12 C 1.47903 * 110.99979 * 61.45606 * 8 6 5 13 13 C 1.46856 * 111.00170 * 235.78742 * 2 1 3 14 14 H 1.08998 * 109.44842 * 65.83127 * 13 2 1 15 15 C 1.53004 * 109.45875 * 305.85966 * 13 2 1 16 16 C 1.50697 * 109.47306 * 302.05254 * 15 13 2 17 17 H 1.08004 * 119.99370 * 5.11256 * 16 15 13 18 18 C 1.37870 * 120.00239 * 185.11141 * 16 15 13 19 19 N 1.31509 * 120.00318 * 180.27622 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47085 * 89.99593 * 20 18 16 22 22 H 1.48495 * 109.47366 * 209.99608 * 20 18 16 23 23 H 1.48507 * 109.46898 * 329.99816 * 20 18 16 24 24 H 1.09001 * 109.47356 * 190.31996 * 1 2 3 25 25 H 1.08999 * 109.46929 * 310.32532 * 1 2 3 26 26 H 1.08999 * 109.47107 * 70.31661 * 1 2 3 27 27 H 1.08994 * 109.46361 * 54.14552 * 3 2 1 28 28 H 1.09001 * 109.45299 * 294.16773 * 3 2 1 29 29 H 1.09000 * 109.49965 * 299.23852 * 4 3 2 30 30 H 1.09004 * 109.53426 * 179.14009 * 4 3 2 31 31 H 1.09004 * 109.52298 * 182.44013 * 5 4 3 32 32 H 1.09004 * 109.57611 * 62.28683 * 5 4 3 33 33 H 1.09002 * 110.66772 * 278.15375 * 9 8 6 34 34 H 1.08994 * 110.66737 * 41.28542 * 9 8 6 35 35 H 1.09003 * 110.72387 * 204.22769 * 10 9 8 36 36 H 1.08998 * 110.72392 * 80.94215 * 10 9 8 37 37 H 1.09001 * 110.31147 * 263.04659 * 11 10 9 38 38 H 1.09005 * 110.31360 * 140.87308 * 11 10 9 39 39 H 1.08999 * 109.91093 * 333.50363 * 12 8 6 40 40 H 1.08996 * 109.91732 * 94.60512 * 12 8 6 41 41 H 1.08997 * 109.46671 * 182.05434 * 15 13 2 42 42 H 1.08996 * 109.47198 * 62.05630 * 15 13 2 43 43 H 0.97000 * 120.00599 * 179.72973 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5368 -1.0143 6 6 3.5181 -0.8716 -1.0208 7 1 3.7813 -1.3838 -0.0953 8 7 4.0461 -1.6247 -2.1662 9 6 3.7879 -0.9062 -3.4403 10 6 4.8228 -1.5259 -4.4128 11 6 6.0634 -1.7300 -3.5133 12 6 5.5153 -1.7680 -2.0746 13 6 1.9953 -0.7709 -1.1338 14 1 1.7325 -0.2707 -2.0659 15 6 1.3890 -2.1756 -1.1203 16 6 1.7089 -2.8483 0.1897 17 1 2.2148 -2.2985 0.9696 18 6 1.3557 -4.1655 0.3925 19 7 1.6300 -4.7510 1.5377 20 14 0.4813 -5.1165 -0.9567 21 1 1.4864 -5.7789 -1.8264 22 1 -0.3996 -6.1446 -0.3466 23 1 -0.3379 -4.1821 -1.7698 24 1 -0.3634 -1.0110 0.1841 25 1 -0.3633 0.6650 0.7835 26 1 -0.3633 0.3461 -0.9676 27 1 1.5635 1.9257 0.8329 28 1 1.7325 1.8606 -0.9377 29 1 3.7814 0.8566 1.0906 30 1 3.9105 2.3509 0.1314 31 1 5.1998 0.4712 -0.8905 32 1 3.8897 1.0349 -1.9565 33 1 2.7723 -1.0938 -3.7888 34 1 3.9638 0.1629 -3.3215 35 1 5.0464 -0.8377 -5.2279 36 1 4.4655 -2.4803 -4.7993 37 1 6.7576 -0.8980 -3.6317 38 1 6.5557 -2.6719 -3.7555 39 1 5.9332 -0.9441 -1.4961 40 1 5.7671 -2.7179 -1.6031 41 1 1.8071 -2.7595 -1.9402 42 1 0.3077 -2.1058 -1.2384 43 1 1.3781 -5.6765 1.6820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:01 Heat of formation + Delta-G solvation = 16.353544 kcal Electronic energy + Delta-G solvation = -20567.658349 eV Core-core repulsion = 17840.753188 eV Total energy + Delta-G solvation = -2726.905161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80985 -37.37466 -33.39537 -32.98770 -31.56041 -29.30827 -28.58188 -26.67509 -26.03377 -23.13313 -22.69636 -21.05375 -20.50647 -19.86048 -18.39562 -16.54876 -15.96574 -15.54876 -14.69062 -14.50274 -14.11148 -13.85225 -13.80062 -13.44767 -13.43013 -12.62760 -12.34414 -12.10046 -11.86484 -11.75150 -11.56914 -11.29422 -11.07475 -10.96877 -10.81602 -10.75636 -10.62168 -10.46626 -10.41108 -10.06721 -9.83063 -9.50329 -9.38094 -8.84940 -8.29087 -7.72270 -7.45744 -5.78981 -3.70995 3.45908 3.52288 3.55570 4.28322 4.66282 4.72094 4.93536 4.96475 5.14846 5.18963 5.28601 5.36591 5.53663 5.57534 5.66676 5.72582 5.77173 5.83979 5.95633 5.96417 5.99896 6.03976 6.04876 6.09913 6.17638 6.22938 6.28088 6.34118 6.38538 6.45636 6.51756 6.70858 6.77411 6.93491 7.29350 7.44484 7.52170 7.63168 7.87711 7.94117 8.09111 8.85225 9.35271 9.85833 11.34916 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.010206 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.650239 B = 2742.698659 C = 3786.419116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.518 5.518 3 C 0.054 3.946 4 C -0.109 4.109 5 C -0.160 4.160 6 C 0.095 3.905 7 H 0.107 0.893 8 N -0.493 5.493 9 C 0.025 3.975 10 C -0.123 4.123 11 C -0.129 4.129 12 C 0.032 3.968 13 C 0.117 3.883 14 H 0.011 0.989 15 C -0.006 4.006 16 C -0.476 4.476 17 H 0.082 0.918 18 C 0.062 3.938 19 N -0.911 5.911 20 Si 0.871 3.129 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.271 1.271 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.006 0.994 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 11.259 -8.755 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.242 5.242 3 C -0.074 4.074 4 C -0.147 4.147 5 C -0.199 4.199 6 C -0.013 4.013 7 H 0.125 0.875 8 N -0.215 5.215 9 C -0.103 4.103 10 C -0.161 4.161 11 C -0.167 4.167 12 C -0.096 4.096 13 C 0.008 3.992 14 H 0.029 0.971 15 C -0.043 4.043 16 C -0.514 4.514 17 H 0.100 0.900 18 C -0.137 4.137 19 N -0.553 5.553 20 Si 0.700 3.300 21 H -0.206 1.206 22 H -0.221 1.221 23 H -0.196 1.196 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.027 0.973 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.223 10.334 -8.221 14.201 hybrid contribution -0.377 0.597 -1.390 1.559 sum 4.846 10.931 -9.612 15.341 Atomic orbital electron populations 1.22293 0.87496 1.03522 0.98029 1.61680 1.07416 1.10654 1.44496 1.22087 0.95339 0.90870 0.99115 1.21461 0.94951 0.98937 0.99386 1.22395 1.00125 0.98856 0.98519 1.21832 0.94345 0.89965 0.95207 0.87514 1.64900 1.10344 1.45034 1.01235 1.23338 0.99641 0.96318 0.91004 1.22459 0.95316 1.01105 0.97202 1.22372 0.97551 1.01481 0.95268 1.22886 0.88788 1.01735 0.96143 1.21429 0.93144 0.96168 0.88419 0.97131 1.19664 0.94542 0.91118 0.98989 1.20988 1.36316 0.95440 0.98685 0.90033 1.24965 0.96086 0.97674 0.94962 1.69910 1.49141 1.12400 1.23812 0.86926 0.80064 0.79979 0.83020 1.20564 1.22094 1.19650 0.89421 0.92794 0.97303 0.91478 0.96402 0.90879 0.92530 0.92169 0.92491 0.90517 0.93725 0.91850 0.90922 0.92193 0.91381 0.93706 0.90310 0.95113 0.97567 0.93325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.86 60.06 0.53 1.17 16 2 N -0.52 -10.06 4.11 -234.92 -0.96 -11.02 16 3 C 0.05 0.86 5.46 -3.83 -0.02 0.84 16 4 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 5 C -0.16 -2.45 4.63 -26.61 -0.12 -2.57 16 6 C 0.10 1.79 1.65 -67.63 -0.11 1.68 16 7 H 0.11 2.40 6.84 -51.93 -0.36 2.05 16 8 N -0.49 -8.81 4.53 -222.41 -1.01 -9.81 16 9 C 0.02 0.38 5.38 -1.90 -0.01 0.36 16 10 C -0.12 -1.57 7.06 -24.87 -0.18 -1.74 16 11 C -0.13 -1.61 6.93 -25.37 -0.18 -1.78 16 12 C 0.03 0.50 6.47 -2.75 -0.02 0.48 16 13 C 0.12 2.36 1.44 -67.71 -0.10 2.26 16 14 H 0.01 0.21 7.00 -51.93 -0.36 -0.15 16 15 C -0.01 -0.14 3.16 -27.88 -0.09 -0.23 16 16 C -0.48 -13.30 8.16 -34.44 -0.28 -13.58 16 17 H 0.08 2.50 7.08 -52.48 -0.37 2.12 16 18 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 19 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 20 Si 0.87 22.47 27.37 -169.99 -4.65 17.81 16 21 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.27 -6.76 6.69 56.52 0.38 -6.38 16 24 H 0.09 1.83 6.42 -51.93 -0.33 1.50 16 25 H 0.05 0.86 7.98 -51.93 -0.41 0.45 16 26 H 0.01 0.15 8.12 -51.93 -0.42 -0.28 16 27 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 28 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.86 6.15 -51.93 -0.32 0.54 16 32 H 0.06 0.84 5.87 -51.93 -0.30 0.54 16 33 H 0.08 1.22 7.66 -51.93 -0.40 0.82 16 34 H 0.04 0.64 5.48 -51.93 -0.28 0.35 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.65 5.63 -51.93 -0.29 0.36 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.03 0.77 6.71 -51.93 -0.35 0.42 16 42 H 0.01 0.15 6.00 -51.93 -0.31 -0.16 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -30.58 310.04 -9.48 -40.06 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.48 Total: -0.79 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.83 Total: -13.16 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -1.20 Total: -48.59 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.65 Total: 17.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.58 -9.48 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.415 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds