Wall clock time and date at job start Mon Mar 30 2020 04:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46846 * 111.00266 * 2 1 4 4 C 1.53045 * 109.52296 * 174.16172 * 3 2 1 5 5 C 1.53114 * 109.27901 * 59.17674 * 4 3 2 6 6 C 1.53118 * 109.16467 * 302.34434 * 5 4 3 7 7 H 1.08998 * 109.50487 * 297.71506 * 6 5 4 8 8 N 1.46897 * 109.50419 * 177.59470 * 6 5 4 9 9 C 1.48534 * 111.00207 * 304.05630 * 8 6 5 10 10 C 1.54936 * 103.22741 * 159.72297 * 9 8 6 11 11 C 1.54591 * 102.92149 * 322.58507 * 10 9 8 12 12 C 1.47903 * 110.99979 * 61.45606 * 8 6 5 13 13 C 1.46856 * 111.00170 * 235.78742 * 2 1 3 14 14 H 1.08998 * 109.44842 * 65.83127 * 13 2 1 15 15 C 1.53004 * 109.45875 * 305.85966 * 13 2 1 16 16 C 1.50697 * 109.47306 * 302.05254 * 15 13 2 17 17 H 1.08004 * 119.99370 * 5.11256 * 16 15 13 18 18 C 1.37870 * 120.00239 * 185.11141 * 16 15 13 19 19 N 1.31509 * 120.00318 * 180.27622 * 18 16 15 20 20 Si 1.86802 * 120.00079 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47085 * 89.99593 * 20 18 16 22 22 H 1.48495 * 109.47366 * 209.99608 * 20 18 16 23 23 H 1.48507 * 109.46898 * 329.99816 * 20 18 16 24 24 H 1.09001 * 109.47356 * 190.31996 * 1 2 3 25 25 H 1.08999 * 109.46929 * 310.32532 * 1 2 3 26 26 H 1.08999 * 109.47107 * 70.31661 * 1 2 3 27 27 H 1.08994 * 109.46361 * 54.14552 * 3 2 1 28 28 H 1.09001 * 109.45299 * 294.16773 * 3 2 1 29 29 H 1.09000 * 109.49965 * 299.23852 * 4 3 2 30 30 H 1.09004 * 109.53426 * 179.14009 * 4 3 2 31 31 H 1.09004 * 109.52298 * 182.44013 * 5 4 3 32 32 H 1.09004 * 109.57611 * 62.28683 * 5 4 3 33 33 H 1.09002 * 110.66772 * 278.15375 * 9 8 6 34 34 H 1.08994 * 110.66737 * 41.28542 * 9 8 6 35 35 H 1.09003 * 110.72387 * 204.22769 * 10 9 8 36 36 H 1.08998 * 110.72392 * 80.94215 * 10 9 8 37 37 H 1.09001 * 110.31147 * 263.04659 * 11 10 9 38 38 H 1.09005 * 110.31360 * 140.87308 * 11 10 9 39 39 H 1.08999 * 109.91093 * 333.50363 * 12 8 6 40 40 H 1.08996 * 109.91732 * 94.60512 * 12 8 6 41 41 H 1.08997 * 109.46671 * 182.05434 * 15 13 2 42 42 H 1.08996 * 109.47198 * 62.05630 * 15 13 2 43 43 H 0.97000 * 120.00599 * 179.72973 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1467 5 6 4.1188 0.5368 -1.0143 6 6 3.5181 -0.8716 -1.0208 7 1 3.7813 -1.3838 -0.0953 8 7 4.0461 -1.6247 -2.1662 9 6 3.7879 -0.9062 -3.4403 10 6 4.8228 -1.5259 -4.4128 11 6 6.0634 -1.7300 -3.5133 12 6 5.5153 -1.7680 -2.0746 13 6 1.9953 -0.7709 -1.1338 14 1 1.7325 -0.2707 -2.0659 15 6 1.3890 -2.1756 -1.1203 16 6 1.7089 -2.8483 0.1897 17 1 2.2148 -2.2985 0.9696 18 6 1.3557 -4.1655 0.3925 19 7 1.6300 -4.7510 1.5377 20 14 0.4813 -5.1165 -0.9567 21 1 1.4864 -5.7789 -1.8264 22 1 -0.3996 -6.1446 -0.3466 23 1 -0.3379 -4.1821 -1.7698 24 1 -0.3634 -1.0110 0.1841 25 1 -0.3633 0.6650 0.7835 26 1 -0.3633 0.3461 -0.9676 27 1 1.5635 1.9257 0.8329 28 1 1.7325 1.8606 -0.9377 29 1 3.7814 0.8566 1.0906 30 1 3.9105 2.3509 0.1314 31 1 5.1998 0.4712 -0.8905 32 1 3.8897 1.0349 -1.9565 33 1 2.7723 -1.0938 -3.7888 34 1 3.9638 0.1629 -3.3215 35 1 5.0464 -0.8377 -5.2279 36 1 4.4655 -2.4803 -4.7993 37 1 6.7576 -0.8980 -3.6317 38 1 6.5557 -2.6719 -3.7555 39 1 5.9332 -0.9441 -1.4961 40 1 5.7671 -2.7179 -1.6031 41 1 1.8071 -2.7595 -1.9402 42 1 0.3077 -2.1058 -1.2384 43 1 1.3781 -5.6765 1.6820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:00 Heat of formation + Delta-G solvation = -4.525486 kcal Electronic energy + Delta-G solvation = -20568.563732 eV Core-core repulsion = 17840.753188 eV Total energy + Delta-G solvation = -2727.810544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17249 -38.68008 -35.18638 -34.42496 -33.33869 -30.85185 -29.77204 -28.23488 -27.50059 -24.97608 -24.00883 -22.25246 -21.88052 -21.27214 -19.94805 -18.58627 -17.25211 -16.84137 -16.25059 -15.99960 -15.75817 -15.40509 -15.15252 -14.86868 -14.73760 -14.39337 -13.90566 -13.42107 -13.30073 -13.24751 -13.04946 -12.88645 -12.44432 -12.26930 -12.26510 -12.17849 -12.05087 -11.89312 -11.75582 -11.69317 -11.30607 -11.16685 -11.15751 -10.82742 -10.56959 -9.04166 -8.89554 -8.09048 -6.04000 1.37778 1.38953 1.48777 2.47093 2.94793 3.26038 3.44608 3.80603 3.80898 3.97442 3.99883 4.08188 4.16086 4.31836 4.38660 4.40809 4.57435 4.58118 4.65624 4.70309 4.73107 4.76064 4.90147 4.96649 4.99302 5.02945 5.03841 5.10451 5.16618 5.19331 5.20933 5.27462 5.33965 5.39641 5.48939 5.61174 5.84847 6.20611 6.26458 6.42235 6.47090 6.63675 7.03626 7.55210 9.08083 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.010206 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.650239 B = 2742.698659 C = 3786.419116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.548 5.548 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.149 4.149 6 C 0.103 3.897 7 H 0.055 0.945 8 N -0.526 5.526 9 C 0.025 3.975 10 C -0.117 4.117 11 C -0.120 4.120 12 C 0.029 3.971 13 C 0.123 3.877 14 H 0.024 0.976 15 C 0.002 3.998 16 C -0.458 4.458 17 H 0.043 0.957 18 C -0.001 4.001 19 N -0.960 5.960 20 Si 0.935 3.065 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.256 1.256 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.023 0.977 42 H 0.004 0.996 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 13.460 -11.220 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.273 5.273 3 C -0.073 4.073 4 C -0.146 4.146 5 C -0.188 4.188 6 C -0.006 4.006 7 H 0.073 0.927 8 N -0.250 5.250 9 C -0.102 4.102 10 C -0.155 4.155 11 C -0.158 4.158 12 C -0.099 4.099 13 C 0.015 3.985 14 H 0.042 0.958 15 C -0.036 4.036 16 C -0.497 4.497 17 H 0.061 0.939 18 C -0.195 4.195 19 N -0.604 5.604 20 Si 0.762 3.238 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.180 1.180 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.614 12.559 -10.704 17.430 hybrid contribution -0.474 -0.049 -0.544 0.723 sum 5.140 12.509 -11.247 17.590 Atomic orbital electron populations 1.22210 0.87194 1.01927 0.99680 1.61621 1.08060 1.13180 1.44460 1.22174 0.95855 0.88760 1.00482 1.21489 0.94436 1.00562 0.98069 1.22277 1.00505 0.96433 0.99547 1.21523 0.93668 0.91811 0.93626 0.92650 1.64778 1.11915 1.46231 1.02037 1.23375 0.99806 0.97027 0.90027 1.22457 0.94394 1.01226 0.97406 1.22348 0.97788 1.02902 0.92768 1.22905 0.87761 1.00768 0.98419 1.21255 0.93909 0.93979 0.89394 0.95816 1.19530 0.94441 0.93488 0.96139 1.21095 1.34202 0.95082 0.99277 0.93909 1.25777 0.97488 0.99029 0.97223 1.70066 1.51363 1.12801 1.26132 0.85887 0.79060 0.78684 0.80203 1.20228 1.21879 1.17970 0.93019 0.90634 0.95714 0.90049 0.94812 0.92968 0.88994 0.91110 0.90825 0.91712 0.92258 0.88861 0.91838 0.89706 0.90824 0.92925 0.92771 0.95865 0.97826 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 8.86 127.69 1.13 2.49 16 2 N -0.55 -21.00 4.11 -897.16 -3.68 -24.69 16 3 C 0.05 1.60 5.46 86.33 0.47 2.07 16 4 C -0.11 -2.91 6.09 30.65 0.19 -2.73 16 5 C -0.15 -4.24 4.63 30.67 0.14 -4.09 16 6 C 0.10 3.88 1.65 44.97 0.07 3.95 16 7 H 0.06 2.64 6.84 -2.39 -0.02 2.62 16 8 N -0.53 -18.59 4.53 -857.56 -3.89 -22.48 16 9 C 0.02 0.70 5.38 86.65 0.47 1.16 16 10 C -0.12 -2.63 7.06 31.80 0.22 -2.41 16 11 C -0.12 -2.68 6.93 31.47 0.22 -2.46 16 12 C 0.03 0.88 6.47 86.45 0.56 1.44 16 13 C 0.12 4.93 1.44 44.94 0.06 4.99 16 14 H 0.02 0.90 7.00 -2.39 -0.02 0.88 16 15 C 0.00 0.07 3.16 29.85 0.09 0.17 16 16 C -0.46 -26.65 8.16 25.60 0.21 -26.44 16 17 H 0.04 2.78 7.08 -2.91 -0.02 2.76 16 18 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 19 N -0.96 -62.56 13.96 21.44 0.30 -62.26 16 20 Si 0.94 47.34 27.37 68.60 1.88 49.22 16 21 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 23 H -0.26 -12.15 6.69 99.48 0.67 -11.49 16 24 H 0.05 2.19 6.42 -2.39 -0.02 2.18 16 25 H 0.07 2.32 7.98 -2.39 -0.02 2.30 16 26 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 27 H 0.08 2.14 8.01 -2.39 -0.02 2.12 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.87 6.15 -2.39 -0.01 1.85 16 32 H 0.07 1.88 5.87 -2.38 -0.01 1.87 16 33 H 0.06 1.94 7.66 -2.39 -0.02 1.92 16 34 H 0.06 1.48 5.48 -2.39 -0.01 1.46 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.47 5.63 -2.39 -0.01 1.45 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.02 1.16 6.71 -2.39 -0.02 1.14 16 42 H 0.00 0.18 6.00 -2.39 -0.01 0.16 16 43 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -69.08 310.04 -0.16 -69.25 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.92 Total: 12.42 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.31 Total: -21.46 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -7.27 Total: -109.43 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.88 Total: 49.22 kcal Total: -69.08 -0.16 -69.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.720 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds