Wall clock time and date at job start Mon Mar 30 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00000 * 2 1 4 4 C 1.53029 * 109.52603 * 174.16274 * 3 2 1 5 5 C 1.53116 * 109.28144 * 59.17534 * 4 3 2 6 6 C 1.53124 * 109.16133 * 302.34728 * 5 4 3 7 7 H 1.08994 * 109.50378 * 297.71241 * 6 5 4 8 8 N 1.46896 * 109.53836 * 177.61041 * 6 5 4 9 9 C 1.48539 * 110.99767 * 49.09613 * 8 6 5 10 10 C 1.54934 * 103.22527 * 159.72215 * 9 8 6 11 11 C 1.54598 * 102.91980 * 322.58364 * 10 9 8 12 12 C 1.47897 * 111.00258 * 166.49138 * 8 6 5 13 13 C 1.46842 * 111.00026 * 235.78997 * 2 1 3 14 14 H 1.09002 * 109.45945 * 305.84480 * 13 2 1 15 15 C 1.52996 * 109.46248 * 65.82131 * 13 2 1 16 16 C 1.50710 * 109.46837 * 187.13153 * 15 13 2 17 17 H 1.07990 * 120.00134 * 5.39900 * 16 15 13 18 18 C 1.37875 * 119.99656 * 185.39826 * 16 15 13 19 19 N 1.31511 * 120.00257 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99878 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47091 * 89.99744 * 20 18 16 22 22 H 1.48490 * 109.47133 * 209.99824 * 20 18 16 23 23 H 1.48494 * 109.46972 * 330.00059 * 20 18 16 24 24 H 1.08996 * 109.47193 * 178.98353 * 1 2 3 25 25 H 1.09000 * 109.47135 * 58.97854 * 1 2 3 26 26 H 1.09008 * 109.46841 * 298.97867 * 1 2 3 27 27 H 1.09008 * 109.46205 * 294.17951 * 3 2 1 28 28 H 1.09004 * 109.46788 * 54.14026 * 3 2 1 29 29 H 1.09003 * 109.50461 * 299.23820 * 4 3 2 30 30 H 1.09007 * 109.54023 * 179.13674 * 4 3 2 31 31 H 1.09000 * 109.52772 * 182.44152 * 5 4 3 32 32 H 1.09006 * 109.57337 * 62.28227 * 5 4 3 33 33 H 1.08998 * 110.66735 * 278.15481 * 9 8 6 34 34 H 1.08996 * 110.66452 * 41.28650 * 9 8 6 35 35 H 1.09000 * 110.72066 * 204.23183 * 10 9 8 36 36 H 1.08993 * 110.88203 * 81.01602 * 10 9 8 37 37 H 1.09002 * 110.31160 * 263.04094 * 11 10 9 38 38 H 1.09004 * 110.30385 * 140.87948 * 11 10 9 39 39 H 1.09000 * 109.91831 * 333.51530 * 12 8 6 40 40 H 1.08999 * 109.91801 * 94.80150 * 12 8 6 41 41 H 1.09000 * 109.47317 * 307.12957 * 15 13 2 42 42 H 1.09001 * 109.47581 * 67.13662 * 15 13 2 43 43 H 0.97004 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 1 3.7814 -1.3835 -0.0953 8 7 4.0460 -1.6254 -2.1657 9 6 5.5259 -1.5194 -2.2362 10 6 5.9274 -2.7358 -3.1077 11 6 4.9377 -3.8314 -2.6489 12 6 3.7511 -3.0685 -2.0315 13 6 1.9953 -0.7707 -1.1337 14 1 1.5635 -1.7716 -1.1240 15 6 1.6263 -0.0691 -2.4422 16 6 2.0110 -0.9443 -3.6073 17 1 2.3915 -1.9397 -3.4324 18 6 1.8771 -0.4741 -4.8965 19 7 1.4132 0.7379 -5.1095 20 14 2.3532 -1.5591 -6.3406 21 1 1.1751 -2.3533 -6.7726 22 1 2.8170 -0.7092 -7.4664 23 1 3.4459 -2.4773 -5.9307 24 1 -0.3633 -1.0275 -0.0182 25 1 -0.3633 0.5296 -0.8807 26 1 -0.3633 0.4979 0.8991 27 1 1.7324 1.8609 -0.9376 28 1 1.5634 1.9258 0.8329 29 1 3.7814 0.8568 1.0906 30 1 3.9104 2.3511 0.1313 31 1 5.1998 0.4715 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 5.8223 -0.5872 -2.7170 34 1 5.9649 -1.5970 -1.2415 35 1 6.9554 -3.0345 -2.9028 36 1 5.7950 -2.5155 -4.1668 37 1 5.4042 -4.4739 -1.9021 38 1 4.6049 -4.4220 -3.5024 39 1 3.6489 -3.3302 -0.9783 40 1 2.8339 -3.3115 -2.5678 41 1 0.5523 0.1153 -2.4654 42 1 2.1594 0.8794 -2.5089 43 1 1.3187 1.0686 -6.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:06 Heat of formation + Delta-G solvation = 20.256369 kcal Electronic energy + Delta-G solvation = -20841.758529 eV Core-core repulsion = 18115.022607 eV Total energy + Delta-G solvation = -2726.735922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60212 -37.38654 -33.12037 -32.84830 -31.35822 -28.97147 -28.39027 -26.66614 -25.77104 -22.83794 -22.33146 -21.80635 -20.16733 -19.95081 -17.71571 -16.53224 -15.82113 -15.17183 -14.71411 -14.41755 -14.25376 -13.78676 -13.56183 -13.19204 -12.87592 -12.37315 -12.24319 -11.99204 -11.81619 -11.62893 -11.39939 -10.99648 -10.94469 -10.91001 -10.80049 -10.60129 -10.46856 -10.39799 -10.17396 -9.99321 -9.80899 -9.52171 -9.27828 -8.64407 -8.09053 -7.50143 -7.24281 -5.72149 -3.62533 3.45150 3.52071 3.56444 4.39328 4.69677 4.87209 5.12669 5.17397 5.36543 5.44881 5.53432 5.57126 5.65836 5.71960 5.82582 5.93336 5.96260 6.10531 6.11310 6.13430 6.13687 6.18966 6.22651 6.28107 6.36046 6.42563 6.48522 6.52688 6.54682 6.59217 6.69692 6.75723 6.86776 7.10013 7.56156 7.65114 7.71458 7.84260 8.00904 8.02274 8.31881 8.75412 9.40056 9.93970 11.41342 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.011358 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.053170 B = 2464.597671 C = 3476.874032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.546 5.546 3 C 0.051 3.949 4 C -0.109 4.109 5 C -0.118 4.118 6 C 0.105 3.895 7 H 0.026 0.974 8 N -0.462 5.462 9 C 0.035 3.965 10 C -0.122 4.122 11 C -0.129 4.129 12 C 0.035 3.965 13 C 0.090 3.910 14 H 0.065 0.935 15 C 0.003 3.997 16 C -0.460 4.460 17 H 0.079 0.921 18 C 0.046 3.954 19 N -0.914 5.914 20 Si 0.881 3.119 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.273 1.273 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.026 0.974 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -3.418 9.124 11.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.270 5.270 3 C -0.077 4.077 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.004 4.004 7 H 0.044 0.956 8 N -0.186 5.186 9 C -0.093 4.093 10 C -0.160 4.160 11 C -0.167 4.167 12 C -0.093 4.093 13 C -0.017 4.017 14 H 0.083 0.917 15 C -0.034 4.034 16 C -0.500 4.500 17 H 0.097 0.903 18 C -0.151 4.151 19 N -0.557 5.557 20 Si 0.711 3.289 21 H -0.217 1.217 22 H -0.221 1.221 23 H -0.197 1.197 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.104 0.896 41 H 0.023 0.977 42 H 0.044 0.956 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.644 -3.324 8.974 11.111 hybrid contribution 0.294 -0.417 -0.974 1.099 sum 5.939 -3.741 8.001 10.643 Atomic orbital electron populations 1.22248 0.88227 1.01475 1.00030 1.62225 1.07158 1.13218 1.44396 1.22030 0.94959 0.90319 1.00394 1.21489 0.95198 0.99424 0.98619 1.21741 0.98191 0.95844 0.99840 1.21546 0.95299 0.93707 0.89842 0.95603 1.65238 1.07573 1.06362 1.39412 1.23193 0.90112 0.98717 0.97237 1.22436 0.97571 0.95138 1.00859 1.22368 0.96361 0.97798 1.00166 1.22919 0.99151 0.88926 0.98280 1.21780 0.92668 0.96963 0.90331 0.91681 1.19646 0.95705 0.96835 0.91259 1.21445 1.37724 1.01299 0.89486 0.90282 1.24909 0.96683 0.94854 0.98658 1.69974 1.48976 1.16767 1.19983 0.86754 0.78505 0.80702 0.82957 1.21650 1.22087 1.19749 0.92116 0.94680 0.92747 0.93545 0.92229 0.92293 0.92150 0.93081 0.89642 0.90414 0.95222 0.92152 0.90816 0.92468 0.91575 0.95019 0.89572 0.97695 0.95568 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.20 60.07 0.55 1.04 16 2 N -0.55 -10.10 4.86 -234.93 -1.14 -11.24 16 3 C 0.05 0.89 5.17 -3.84 -0.02 0.87 16 4 C -0.11 -1.73 6.09 -26.66 -0.16 -1.89 16 5 C -0.12 -2.12 4.45 -26.61 -0.12 -2.24 16 6 C 0.11 1.99 1.65 -67.63 -0.11 1.88 16 7 H 0.03 0.49 7.71 -51.93 -0.40 0.09 16 8 N -0.46 -8.94 2.56 -222.41 -0.57 -9.51 16 9 C 0.04 0.59 5.04 -1.90 -0.01 0.58 16 10 C -0.12 -1.86 7.06 -24.87 -0.18 -2.04 16 11 C -0.13 -1.94 6.93 -25.38 -0.18 -2.12 16 12 C 0.04 0.62 5.34 -2.76 -0.01 0.60 16 13 C 0.09 1.87 1.98 -67.72 -0.13 1.74 16 14 H 0.06 1.40 7.60 -51.93 -0.39 1.01 16 15 C 0.00 0.09 3.51 -27.88 -0.10 -0.01 16 16 C -0.46 -12.38 7.52 -34.44 -0.26 -12.64 16 17 H 0.08 2.04 3.74 -52.49 -0.20 1.85 16 18 C 0.05 1.32 5.46 -17.82 -0.10 1.22 16 19 N -0.91 -27.78 13.29 55.43 0.74 -27.04 16 20 Si 0.88 22.16 29.54 -169.99 -5.02 17.14 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 25 H 0.03 0.66 6.57 -51.93 -0.34 0.32 16 26 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.05 0.93 6.36 -51.92 -0.33 0.60 16 28 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.82 6.84 -51.93 -0.36 0.47 16 32 H 0.09 1.82 6.41 -51.93 -0.33 1.49 16 33 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 34 H 0.03 0.45 7.87 -51.93 -0.41 0.05 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.52 7.51 -51.93 -0.39 0.13 16 40 H 0.09 1.67 6.41 -51.93 -0.33 1.34 16 41 H 0.00 0.14 6.35 -51.93 -0.33 -0.19 16 42 H 0.03 0.71 4.85 -51.93 -0.25 0.46 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -29.69 308.40 -9.57 -39.26 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.40 Total: -0.25 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.82 Total: -13.01 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.97 Total: -47.79 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.69 -9.57 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.517 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds