Wall clock time and date at job start Mon Mar 30 2020 04:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00000 * 2 1 4 4 C 1.53029 * 109.52603 * 174.16274 * 3 2 1 5 5 C 1.53116 * 109.28144 * 59.17534 * 4 3 2 6 6 C 1.53124 * 109.16133 * 302.34728 * 5 4 3 7 7 H 1.08994 * 109.50378 * 297.71241 * 6 5 4 8 8 N 1.46896 * 109.53836 * 177.61041 * 6 5 4 9 9 C 1.48539 * 110.99767 * 49.09613 * 8 6 5 10 10 C 1.54934 * 103.22527 * 159.72215 * 9 8 6 11 11 C 1.54598 * 102.91980 * 322.58364 * 10 9 8 12 12 C 1.47897 * 111.00258 * 166.49138 * 8 6 5 13 13 C 1.46842 * 111.00026 * 235.78997 * 2 1 3 14 14 H 1.09002 * 109.45945 * 305.84480 * 13 2 1 15 15 C 1.52996 * 109.46248 * 65.82131 * 13 2 1 16 16 C 1.50710 * 109.46837 * 187.13153 * 15 13 2 17 17 H 1.07990 * 120.00134 * 5.39900 * 16 15 13 18 18 C 1.37875 * 119.99656 * 185.39826 * 16 15 13 19 19 N 1.31511 * 120.00257 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99878 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47091 * 89.99744 * 20 18 16 22 22 H 1.48490 * 109.47133 * 209.99824 * 20 18 16 23 23 H 1.48494 * 109.46972 * 330.00059 * 20 18 16 24 24 H 1.08996 * 109.47193 * 178.98353 * 1 2 3 25 25 H 1.09000 * 109.47135 * 58.97854 * 1 2 3 26 26 H 1.09008 * 109.46841 * 298.97867 * 1 2 3 27 27 H 1.09008 * 109.46205 * 294.17951 * 3 2 1 28 28 H 1.09004 * 109.46788 * 54.14026 * 3 2 1 29 29 H 1.09003 * 109.50461 * 299.23820 * 4 3 2 30 30 H 1.09007 * 109.54023 * 179.13674 * 4 3 2 31 31 H 1.09000 * 109.52772 * 182.44152 * 5 4 3 32 32 H 1.09006 * 109.57337 * 62.28227 * 5 4 3 33 33 H 1.08998 * 110.66735 * 278.15481 * 9 8 6 34 34 H 1.08996 * 110.66452 * 41.28650 * 9 8 6 35 35 H 1.09000 * 110.72066 * 204.23183 * 10 9 8 36 36 H 1.08993 * 110.88203 * 81.01602 * 10 9 8 37 37 H 1.09002 * 110.31160 * 263.04094 * 11 10 9 38 38 H 1.09004 * 110.30385 * 140.87948 * 11 10 9 39 39 H 1.09000 * 109.91831 * 333.51530 * 12 8 6 40 40 H 1.08999 * 109.91801 * 94.80150 * 12 8 6 41 41 H 1.09000 * 109.47317 * 307.12957 * 15 13 2 42 42 H 1.09001 * 109.47581 * 67.13662 * 15 13 2 43 43 H 0.97004 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8715 -1.0208 7 1 3.7814 -1.3835 -0.0953 8 7 4.0460 -1.6254 -2.1657 9 6 5.5259 -1.5194 -2.2362 10 6 5.9274 -2.7358 -3.1077 11 6 4.9377 -3.8314 -2.6489 12 6 3.7511 -3.0685 -2.0315 13 6 1.9953 -0.7707 -1.1337 14 1 1.5635 -1.7716 -1.1240 15 6 1.6263 -0.0691 -2.4422 16 6 2.0110 -0.9443 -3.6073 17 1 2.3915 -1.9397 -3.4324 18 6 1.8771 -0.4741 -4.8965 19 7 1.4132 0.7379 -5.1095 20 14 2.3532 -1.5591 -6.3406 21 1 1.1751 -2.3533 -6.7726 22 1 2.8170 -0.7092 -7.4664 23 1 3.4459 -2.4773 -5.9307 24 1 -0.3633 -1.0275 -0.0182 25 1 -0.3633 0.5296 -0.8807 26 1 -0.3633 0.4979 0.8991 27 1 1.7324 1.8609 -0.9376 28 1 1.5634 1.9258 0.8329 29 1 3.7814 0.8568 1.0906 30 1 3.9104 2.3511 0.1313 31 1 5.1998 0.4715 -0.8906 32 1 3.8896 1.0351 -1.9565 33 1 5.8223 -0.5872 -2.7170 34 1 5.9649 -1.5970 -1.2415 35 1 6.9554 -3.0345 -2.9028 36 1 5.7950 -2.5155 -4.1668 37 1 5.4042 -4.4739 -1.9021 38 1 4.6049 -4.4220 -3.5024 39 1 3.6489 -3.3302 -0.9783 40 1 2.8339 -3.3115 -2.5678 41 1 0.5523 0.1153 -2.4654 42 1 2.1594 0.8794 -2.5089 43 1 1.3187 1.0686 -6.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861129.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:06 Heat of formation + Delta-G solvation = 1.560114 kcal Electronic energy + Delta-G solvation = -20842.569260 eV Core-core repulsion = 18115.022607 eV Total energy + Delta-G solvation = -2727.546652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.10243 -38.77590 -34.88852 -34.51922 -32.95647 -30.64046 -29.73096 -28.33873 -27.31994 -24.78095 -23.74023 -23.32367 -21.56431 -21.24459 -19.32046 -18.49804 -17.24644 -16.70458 -16.32355 -16.13197 -15.93460 -15.34812 -14.96366 -14.66158 -14.31898 -13.99291 -13.70400 -13.62008 -13.44149 -13.09776 -12.93044 -12.82493 -12.56330 -12.44489 -12.30883 -12.23314 -11.98271 -11.86132 -11.57115 -11.52507 -11.33265 -11.26521 -10.91519 -10.62980 -10.29590 -9.07378 -8.76316 -7.93819 -5.88496 1.42111 1.43661 1.54865 2.57073 2.96769 3.39179 3.51471 3.79582 3.89255 4.08539 4.11408 4.14855 4.21667 4.40721 4.46549 4.51834 4.60714 4.68194 4.70650 4.73403 4.81106 4.87370 4.96772 4.99207 5.01736 5.06328 5.09537 5.14016 5.16609 5.17315 5.19582 5.30747 5.43182 5.53167 5.68329 5.82022 6.03734 6.15015 6.28944 6.35858 6.51388 6.68336 7.23255 7.71190 9.20015 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.011358 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.053170 B = 2464.597671 C = 3476.874032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.539 5.539 3 C 0.050 3.950 4 C -0.103 4.103 5 C -0.113 4.113 6 C 0.111 3.889 7 H 0.041 0.959 8 N -0.500 5.500 9 C 0.037 3.963 10 C -0.119 4.119 11 C -0.123 4.123 12 C 0.034 3.966 13 C 0.100 3.900 14 H 0.055 0.945 15 C 0.018 3.982 16 C -0.453 4.453 17 H 0.092 0.908 18 C -0.013 4.013 19 N -0.956 5.956 20 Si 0.941 3.059 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.257 1.257 24 H 0.065 0.935 25 H 0.006 0.994 26 H 0.086 0.914 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.059 0.941 41 H -0.030 1.030 42 H 0.000 1.000 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.602 -4.914 11.029 14.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.262 5.262 3 C -0.078 4.078 4 C -0.141 4.141 5 C -0.151 4.151 6 C 0.002 3.998 7 H 0.058 0.942 8 N -0.224 5.224 9 C -0.091 4.091 10 C -0.157 4.157 11 C -0.161 4.161 12 C -0.094 4.094 13 C -0.008 4.008 14 H 0.073 0.927 15 C -0.020 4.020 16 C -0.492 4.492 17 H 0.110 0.890 18 C -0.206 4.206 19 N -0.602 5.602 20 Si 0.769 3.231 21 H -0.214 1.214 22 H -0.227 1.227 23 H -0.181 1.181 24 H 0.083 0.917 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.077 0.923 41 H -0.012 1.012 42 H 0.018 0.982 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.480 -4.841 10.893 14.072 hybrid contribution -0.321 0.077 -1.518 1.554 sum 7.159 -4.764 9.374 12.721 Atomic orbital electron populations 1.22317 0.87577 1.01824 1.00226 1.62323 1.07807 1.13704 1.42416 1.22127 0.96572 0.89503 0.99638 1.21496 0.93617 1.00522 0.98458 1.21672 0.99648 0.95154 0.98625 1.21468 0.93552 0.94408 0.90418 0.94152 1.65036 1.09699 1.07505 1.40159 1.23187 0.88436 0.98858 0.98574 1.22434 0.99510 0.94546 0.99197 1.22362 0.95288 0.97693 1.00763 1.22871 0.99167 0.88412 0.98904 1.21560 0.94565 0.95959 0.88737 0.92705 1.19452 0.92958 0.95943 0.93692 1.21901 1.35620 1.01760 0.89897 0.89048 1.25689 0.97371 0.96009 1.01563 1.70138 1.51193 1.18773 1.20077 0.85788 0.78543 0.79130 0.79645 1.21355 1.22688 1.18110 0.91651 0.97580 0.89501 0.97241 0.89380 0.90152 0.90201 0.90905 0.93992 0.91754 0.93001 0.88858 0.93038 0.89474 0.91805 0.93746 0.92298 1.01168 0.98179 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.20 127.69 1.18 2.16 16 2 N -0.54 -19.49 4.86 -897.17 -4.36 -23.85 16 3 C 0.05 1.68 5.17 86.32 0.45 2.13 16 4 C -0.10 -3.04 6.09 30.64 0.19 -2.85 16 5 C -0.11 -3.95 4.45 30.67 0.14 -3.81 16 6 C 0.11 4.05 1.65 44.97 0.07 4.13 16 7 H 0.04 1.39 7.71 -2.39 -0.02 1.37 16 8 N -0.50 -18.81 2.56 -857.58 -2.20 -21.01 16 9 C 0.04 1.15 5.04 86.65 0.44 1.59 16 10 C -0.12 -3.30 7.06 31.80 0.22 -3.08 16 11 C -0.12 -3.34 6.93 31.47 0.22 -3.13 16 12 C 0.03 1.14 5.34 86.44 0.46 1.60 16 13 C 0.10 4.17 1.98 44.94 0.09 4.26 16 14 H 0.05 2.37 7.60 -2.39 -0.02 2.36 16 15 C 0.02 0.92 3.51 29.85 0.10 1.02 16 16 C -0.45 -25.04 7.52 25.60 0.19 -24.85 16 17 H 0.09 4.78 3.74 -2.92 -0.01 4.77 16 18 C -0.01 -0.79 5.46 84.65 0.46 -0.32 16 19 N -0.96 -60.65 13.29 21.45 0.28 -60.37 16 20 Si 0.94 46.53 29.54 68.60 2.03 48.56 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 24 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 25 H 0.01 0.22 6.57 -2.39 -0.02 0.21 16 26 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.01 0.39 6.36 -2.38 -0.02 0.37 16 28 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.19 6.84 -2.39 -0.02 2.17 16 32 H 0.04 1.83 6.41 -2.38 -0.02 1.82 16 33 H 0.06 2.15 7.74 -2.39 -0.02 2.13 16 34 H 0.05 1.39 7.87 -2.39 -0.02 1.37 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.36 7.51 -2.39 -0.02 1.34 16 40 H 0.06 2.26 6.41 -2.39 -0.02 2.24 16 41 H -0.03 -1.75 6.35 -2.39 -0.02 -1.76 16 42 H 0.00 0.00 4.85 -2.39 -0.01 -0.01 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -66.57 308.40 0.93 -65.64 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.97 Total: 12.18 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 4.21 Total: -21.15 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -6.27 Total: -105.23 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -66.57 0.93 -65.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861129.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.199 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds