Wall clock time and date at job start Mon Mar 30 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48534 * 111.00126 * 2 1 4 4 C 1.54934 * 103.22526 * 159.71815 * 3 2 1 5 5 C 1.54595 * 102.92561 * 322.58299 * 4 3 2 6 6 C 1.47900 * 110.99623 * 117.39579 * 2 1 3 7 7 H 1.09000 * 109.92141 * 333.50660 * 6 2 1 8 8 C 1.52997 * 110.08523 * 94.71027 * 6 2 1 9 9 N 1.46895 * 109.47466 * 183.20319 * 8 6 2 10 10 C 1.46850 * 111.00071 * 75.68851 * 9 8 6 11 11 C 1.53032 * 109.53018 * 185.83970 * 10 9 8 12 12 C 1.53118 * 109.27964 * 300.82417 * 11 10 9 13 13 C 1.53123 * 109.16261 * 57.64434 * 12 11 10 14 14 C 1.46844 * 111.00368 * 199.89574 * 9 8 6 15 15 H 1.09000 * 109.46380 * 294.17935 * 14 9 8 16 16 C 1.50702 * 109.45936 * 54.14684 * 14 9 8 17 17 H 1.08002 * 120.00025 * 0.02562 * 16 14 9 18 18 C 1.37882 * 119.99938 * 180.02562 * 16 14 9 19 19 N 1.31516 * 119.99901 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99990 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.47474 * 119.99891 * 20 18 16 23 23 H 1.48497 * 109.46715 * 239.99924 * 20 18 16 24 24 H 1.08999 * 109.47368 * 307.19179 * 1 2 3 25 25 H 1.09005 * 109.46919 * 67.18945 * 1 2 3 26 26 H 1.08993 * 109.47272 * 187.18647 * 1 2 3 27 27 H 1.09003 * 110.66719 * 41.28521 * 3 2 1 28 28 H 1.08998 * 110.80435 * 278.21986 * 3 2 1 29 29 H 1.09006 * 110.72465 * 204.22780 * 4 3 2 30 30 H 1.08999 * 110.87613 * 81.01802 * 4 3 2 31 31 H 1.08999 * 110.31201 * 263.04246 * 5 4 3 32 32 H 1.09004 * 110.39507 * 140.91209 * 5 4 3 33 33 H 1.08997 * 109.47375 * 303.20788 * 8 6 2 34 34 H 1.09002 * 109.46999 * 63.20846 * 8 6 2 35 35 H 1.08999 * 109.46207 * 305.86065 * 10 9 8 36 36 H 1.08999 * 109.46100 * 65.82129 * 10 9 8 37 37 H 1.09002 * 109.49970 * 60.75843 * 11 10 9 38 38 H 1.08993 * 109.50698 * 180.83652 * 11 10 9 39 39 H 1.08994 * 109.53079 * 177.55805 * 12 11 10 40 40 H 1.09007 * 109.52058 * 297.74900 * 12 11 10 41 41 H 1.09007 * 109.49812 * 62.29551 * 13 12 11 42 42 H 1.08999 * 109.50256 * 182.40690 * 13 12 11 43 43 H 0.96996 * 119.99599 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2982 0.1053 1.5932 6 6 1.9990 -0.6354 1.2259 7 1 1.2758 -0.5402 2.0359 8 6 2.2974 -2.1131 0.9650 9 7 2.7498 -2.7486 2.2097 10 6 1.6216 -2.9878 3.1187 11 6 2.1455 -3.5140 4.4568 12 6 2.9194 -4.8139 4.2208 13 6 4.0592 -4.5481 3.2334 14 6 3.4797 -3.9919 1.9308 15 1 2.7987 -4.7229 1.4949 16 6 4.5999 -3.7101 0.9629 17 1 4.7542 -2.7073 0.5926 18 6 5.4279 -4.7324 0.5501 19 7 5.2404 -5.9534 1.0015 20 14 6.8169 -4.3830 -0.6490 21 1 6.8148 -2.9405 -1.0022 22 1 8.1146 -4.7372 -0.0203 23 1 6.6250 -5.1934 -1.8784 24 1 -0.3634 0.6212 0.8186 25 1 -0.3633 0.3984 -0.9473 26 1 -0.3633 -1.0195 0.1285 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.8003 -1.0084 29 1 3.8123 2.1351 0.9717 30 1 4.1140 0.8847 -0.2771 31 1 3.2136 0.5486 2.5854 32 1 4.1467 -0.5780 1.5559 33 1 1.3937 -2.6093 0.6113 34 1 3.0781 -2.1981 0.2091 35 1 1.0822 -2.0547 3.2815 36 1 0.9493 -3.7235 2.6773 37 1 2.8071 -2.7729 4.9054 38 1 1.3068 -3.7055 5.1261 39 1 3.3312 -5.1694 5.1653 40 1 2.2485 -5.5675 3.8083 41 1 4.7509 -3.8233 3.6627 42 1 4.5876 -5.4791 3.0284 43 1 5.8231 -6.6725 0.7114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:54 Heat of formation + Delta-G solvation = 0.944701 kcal Electronic energy + Delta-G solvation = -20147.383031 eV Core-core repulsion = 17419.809693 eV Total energy + Delta-G solvation = -2727.573339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.07318 -37.57236 -32.89464 -32.87459 -31.79566 -29.50457 -28.87719 -25.58850 -25.18613 -24.20266 -21.97553 -21.09743 -20.78681 -19.20949 -18.56475 -16.32935 -15.84228 -15.25705 -15.03750 -14.38650 -13.79070 -13.71442 -13.37728 -13.28086 -13.19407 -12.60796 -12.39846 -12.16978 -11.97955 -11.80708 -11.41503 -11.06477 -10.94257 -10.77871 -10.71623 -10.66412 -10.47493 -10.24496 -10.13767 -10.05590 -9.82985 -9.53862 -9.18079 -8.67823 -8.34261 -8.16513 -7.08613 -5.97209 -4.00895 3.32755 3.40846 3.45524 4.15102 4.45540 4.96252 5.06435 5.17092 5.30717 5.35388 5.48514 5.54283 5.60414 5.68477 5.73198 5.76347 5.87279 5.90980 5.97393 6.13600 6.14799 6.25153 6.28749 6.41940 6.43192 6.47096 6.51821 6.62404 6.83424 6.84782 6.90896 6.93232 7.19790 7.22848 7.33317 7.38285 7.65319 7.80675 7.88627 8.27584 8.40529 8.67778 9.06474 9.63661 11.09239 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.008600 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.497152 B = 3254.901406 C = 4415.536451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.114 4.114 6 C 0.075 3.925 7 H 0.041 0.959 8 C 0.077 3.923 9 N -0.531 5.531 10 C 0.058 3.942 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.104 4.104 14 C 0.221 3.779 15 H -0.004 1.004 16 C -0.501 4.501 17 H 0.066 0.934 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.286 1.286 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.014 0.986 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 10.242 1.957 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.244 5.244 3 C -0.091 4.091 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.034 4.034 7 H 0.059 0.941 8 C -0.052 4.052 9 N -0.257 5.257 10 C -0.071 4.071 11 C -0.148 4.148 12 C -0.160 4.160 13 C -0.142 4.142 14 C 0.115 3.885 15 H 0.014 0.986 16 C -0.540 4.540 17 H 0.084 0.916 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.212 1.212 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.337 10.080 1.705 12.028 hybrid contribution -0.284 -0.069 -0.251 0.385 sum -6.621 10.011 1.454 12.090 Atomic orbital electron populations 1.22465 0.88564 1.01571 1.00282 1.64514 1.07331 1.14231 1.38292 1.23190 0.95616 0.89922 1.00356 1.22520 0.96015 0.98664 0.99270 1.22310 0.98905 0.96927 0.97060 1.22397 0.95554 0.96122 0.89299 0.94077 1.21898 0.99373 0.90570 0.93376 1.61868 1.22123 1.28823 1.12861 1.21988 0.93004 0.97836 0.94232 1.21525 0.98884 0.98238 0.96147 1.21684 0.99009 0.96008 0.99309 1.21635 0.95847 1.02563 0.94190 1.19172 0.92082 0.84293 0.92937 0.98604 1.21232 1.13090 0.94972 1.24693 0.91599 1.24924 0.97643 0.95065 0.96530 1.69900 1.38914 1.00124 1.44269 0.86514 0.82068 0.78453 0.80854 1.19638 1.21157 1.21233 0.95994 0.91730 0.91544 0.94436 0.90628 0.91781 0.90804 0.92508 0.88978 0.96728 0.88262 0.92949 0.96488 0.91966 0.93533 0.93845 0.93494 0.93897 0.88915 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.42 60.07 0.57 0.83 16 2 N -0.52 -8.02 5.19 -230.78 -1.20 -9.21 16 3 C 0.04 0.49 6.56 -1.90 -0.01 0.48 16 4 C -0.13 -1.75 7.06 -24.87 -0.18 -1.92 16 5 C -0.11 -1.85 6.36 -25.37 -0.16 -2.01 16 6 C 0.07 1.26 2.57 -66.64 -0.17 1.09 16 7 H 0.04 0.69 6.37 -51.93 -0.33 0.36 16 8 C 0.08 1.54 4.30 -3.83 -0.02 1.53 16 9 N -0.53 -11.30 4.09 -228.09 -0.93 -12.23 16 10 C 0.06 1.09 5.29 -3.83 -0.02 1.07 16 11 C -0.11 -1.95 6.09 -26.65 -0.16 -2.11 16 12 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 13 C -0.10 -2.48 5.14 -26.65 -0.14 -2.61 16 14 C 0.22 5.51 1.83 -68.88 -0.13 5.39 16 15 H 0.00 -0.10 8.14 -51.93 -0.42 -0.52 16 16 C -0.50 -13.46 7.65 -34.44 -0.26 -13.72 16 17 H 0.07 1.77 6.45 -52.49 -0.34 1.43 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -25.27 11.33 55.43 0.63 -24.64 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.02 0.26 7.96 -51.93 -0.41 -0.15 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 27 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.75 7.60 -51.93 -0.39 1.36 16 33 H 0.01 0.30 8.00 -51.93 -0.42 -0.11 16 34 H 0.10 2.27 5.65 -51.93 -0.29 1.98 16 35 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.09 2.46 6.09 -51.93 -0.32 2.14 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -27.53 321.87 -10.50 -38.03 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.89 Total: -0.01 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.93 Total: -13.07 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -1.50 Total: -46.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.53 -10.50 -38.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds