Wall clock time and date at job start Mon Mar 30 2020 03:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48534 * 111.00126 * 2 1 4 4 C 1.54934 * 103.22526 * 159.71815 * 3 2 1 5 5 C 1.54595 * 102.92561 * 322.58299 * 4 3 2 6 6 C 1.47900 * 110.99623 * 117.39579 * 2 1 3 7 7 H 1.09000 * 109.92141 * 333.50660 * 6 2 1 8 8 C 1.52997 * 110.08523 * 94.71027 * 6 2 1 9 9 N 1.46895 * 109.47466 * 183.20319 * 8 6 2 10 10 C 1.46850 * 111.00071 * 75.68851 * 9 8 6 11 11 C 1.53032 * 109.53018 * 185.83970 * 10 9 8 12 12 C 1.53118 * 109.27964 * 300.82417 * 11 10 9 13 13 C 1.53123 * 109.16261 * 57.64434 * 12 11 10 14 14 C 1.46844 * 111.00368 * 199.89574 * 9 8 6 15 15 H 1.09000 * 109.46380 * 294.17935 * 14 9 8 16 16 C 1.50702 * 109.45936 * 54.14684 * 14 9 8 17 17 H 1.08002 * 120.00025 * 0.02562 * 16 14 9 18 18 C 1.37882 * 119.99938 * 180.02562 * 16 14 9 19 19 N 1.31516 * 119.99901 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 119.99990 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47142 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.47474 * 119.99891 * 20 18 16 23 23 H 1.48497 * 109.46715 * 239.99924 * 20 18 16 24 24 H 1.08999 * 109.47368 * 307.19179 * 1 2 3 25 25 H 1.09005 * 109.46919 * 67.18945 * 1 2 3 26 26 H 1.08993 * 109.47272 * 187.18647 * 1 2 3 27 27 H 1.09003 * 110.66719 * 41.28521 * 3 2 1 28 28 H 1.08998 * 110.80435 * 278.21986 * 3 2 1 29 29 H 1.09006 * 110.72465 * 204.22780 * 4 3 2 30 30 H 1.08999 * 110.87613 * 81.01802 * 4 3 2 31 31 H 1.08999 * 110.31201 * 263.04246 * 5 4 3 32 32 H 1.09004 * 110.39507 * 140.91209 * 5 4 3 33 33 H 1.08997 * 109.47375 * 303.20788 * 8 6 2 34 34 H 1.09002 * 109.46999 * 63.20846 * 8 6 2 35 35 H 1.08999 * 109.46207 * 305.86065 * 10 9 8 36 36 H 1.08999 * 109.46100 * 65.82129 * 10 9 8 37 37 H 1.09002 * 109.49970 * 60.75843 * 11 10 9 38 38 H 1.08993 * 109.50698 * 180.83652 * 11 10 9 39 39 H 1.08994 * 109.53079 * 177.55805 * 12 11 10 40 40 H 1.09007 * 109.52058 * 297.74900 * 12 11 10 41 41 H 1.09007 * 109.49812 * 62.29551 * 13 12 11 42 42 H 1.08999 * 109.50256 * 182.40690 * 13 12 11 43 43 H 0.96996 * 119.99599 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2982 0.1053 1.5932 6 6 1.9990 -0.6354 1.2259 7 1 1.2758 -0.5402 2.0359 8 6 2.2974 -2.1131 0.9650 9 7 2.7498 -2.7486 2.2097 10 6 1.6216 -2.9878 3.1187 11 6 2.1455 -3.5140 4.4568 12 6 2.9194 -4.8139 4.2208 13 6 4.0592 -4.5481 3.2334 14 6 3.4797 -3.9919 1.9308 15 1 2.7987 -4.7229 1.4949 16 6 4.5999 -3.7101 0.9629 17 1 4.7542 -2.7073 0.5926 18 6 5.4279 -4.7324 0.5501 19 7 5.2404 -5.9534 1.0015 20 14 6.8169 -4.3830 -0.6490 21 1 6.8148 -2.9405 -1.0022 22 1 8.1146 -4.7372 -0.0203 23 1 6.6250 -5.1934 -1.8784 24 1 -0.3634 0.6212 0.8186 25 1 -0.3633 0.3984 -0.9473 26 1 -0.3633 -1.0195 0.1285 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.8003 -1.0084 29 1 3.8123 2.1351 0.9717 30 1 4.1140 0.8847 -0.2771 31 1 3.2136 0.5486 2.5854 32 1 4.1467 -0.5780 1.5559 33 1 1.3937 -2.6093 0.6113 34 1 3.0781 -2.1981 0.2091 35 1 1.0822 -2.0547 3.2815 36 1 0.9493 -3.7235 2.6773 37 1 2.8071 -2.7729 4.9054 38 1 1.3068 -3.7055 5.1261 39 1 3.3312 -5.1694 5.1653 40 1 2.2485 -5.5675 3.8083 41 1 4.7509 -3.8233 3.6627 42 1 4.5876 -5.4791 3.0284 43 1 5.8231 -6.6725 0.7114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:53 Heat of formation + Delta-G solvation = -16.268952 kcal Electronic energy + Delta-G solvation = -20148.129471 eV Core-core repulsion = 17419.809693 eV Total energy + Delta-G solvation = -2728.319779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47739 -39.11065 -34.90639 -34.47830 -32.94179 -31.35807 -30.29157 -27.26229 -26.63297 -25.70219 -23.60500 -22.81244 -21.94819 -20.64081 -20.28947 -18.37868 -17.23578 -16.77930 -16.38776 -16.10228 -15.47582 -15.03739 -14.91941 -14.83292 -14.42859 -14.32853 -13.90691 -13.79045 -13.53237 -13.12900 -12.86199 -12.69670 -12.55225 -12.35067 -12.24682 -12.10281 -11.96086 -11.89917 -11.79631 -11.60000 -11.38001 -11.30841 -10.86368 -10.67015 -10.38022 -9.34027 -8.86526 -8.08492 -6.18834 1.40017 1.42065 1.53850 2.43140 2.91025 3.19371 3.62474 3.80339 3.90472 4.07975 4.17751 4.20034 4.27439 4.38745 4.44355 4.56014 4.60876 4.64022 4.67439 4.81198 4.83768 4.86589 4.91963 4.99241 5.04900 5.05720 5.11840 5.14928 5.24791 5.28404 5.30940 5.37545 5.48270 5.54375 5.68609 5.80304 5.84974 6.03889 6.19738 6.32965 6.47795 6.82171 6.96968 7.49262 8.97072 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016540 B = 0.008600 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.497152 B = 3254.901406 C = 4415.536451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.042 3.958 4 C -0.123 4.123 5 C -0.113 4.113 6 C 0.086 3.914 7 H 0.049 0.951 8 C 0.084 3.916 9 N -0.530 5.530 10 C 0.055 3.945 11 C -0.103 4.103 12 C -0.118 4.118 13 C -0.098 4.098 14 C 0.228 3.772 15 H -0.048 1.048 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.284 1.284 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.002 0.998 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.006 0.994 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.731 12.516 2.689 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.086 4.086 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.023 4.023 7 H 0.067 0.933 8 C -0.044 4.044 9 N -0.255 5.255 10 C -0.073 4.073 11 C -0.140 4.140 12 C -0.155 4.155 13 C -0.137 4.137 14 C 0.121 3.879 15 H -0.031 1.031 16 C -0.551 4.551 17 H 0.077 0.923 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.780 3.220 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.210 1.210 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.025 0.975 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.194 12.374 2.437 14.519 hybrid contribution -0.062 -0.787 -0.509 0.939 sum -7.256 11.587 1.929 13.807 Atomic orbital electron populations 1.22491 0.87039 1.01388 1.01819 1.64446 1.08966 1.15886 1.37474 1.23240 0.94863 0.88797 1.01656 1.22511 0.96632 0.98756 0.98148 1.22240 0.97087 0.97062 0.98769 1.22169 0.96223 0.93592 0.90298 0.93260 1.21787 0.97278 0.93200 0.92179 1.61877 1.23448 1.26651 1.13549 1.22134 0.92068 0.99000 0.94125 1.21506 0.99877 0.96687 0.95956 1.21614 0.97622 0.97388 0.98922 1.21437 0.96960 1.00511 0.94750 1.18947 0.91139 0.84870 0.92969 1.03104 1.21481 1.13679 0.94689 1.25205 0.92265 1.25671 0.99932 0.94930 0.98172 1.70035 1.39834 1.00815 1.45331 0.85562 0.79324 0.78370 0.78758 1.19159 1.20539 1.20987 0.94462 0.90076 0.92664 0.92537 0.89238 0.89168 0.92220 0.91096 0.92570 0.98020 0.91774 0.90263 0.97539 0.91436 0.89863 0.91643 0.94365 0.94747 0.92100 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.42 127.69 1.20 1.70 16 2 N -0.54 -15.85 5.19 -884.07 -4.59 -20.44 16 3 C 0.04 0.97 6.56 86.65 0.57 1.54 16 4 C -0.12 -3.13 7.06 31.80 0.22 -2.91 16 5 C -0.11 -3.56 6.36 31.48 0.20 -3.36 16 6 C 0.09 2.81 2.57 45.06 0.12 2.92 16 7 H 0.05 1.53 6.37 -2.39 -0.02 1.52 16 8 C 0.08 3.50 4.30 86.30 0.37 3.87 16 9 N -0.53 -22.94 4.09 -875.54 -3.58 -26.52 16 10 C 0.05 2.00 5.29 86.32 0.46 2.45 16 11 C -0.10 -3.39 6.09 30.64 0.19 -3.21 16 12 C -0.12 -4.61 6.00 30.67 0.18 -4.42 16 13 C -0.10 -4.81 5.14 30.65 0.16 -4.65 16 14 C 0.23 11.85 1.83 44.19 0.08 11.93 16 15 H -0.05 -2.90 8.14 -2.39 -0.02 -2.92 16 16 C -0.51 -28.70 7.65 25.60 0.20 -28.50 16 17 H 0.06 3.33 6.45 -2.91 -0.02 3.31 16 18 C 0.01 0.64 5.30 84.66 0.45 1.09 16 19 N -0.92 -54.04 11.33 21.45 0.24 -53.79 16 20 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 24 H 0.04 0.77 7.96 -2.39 -0.02 0.75 16 25 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.06 1.13 7.89 -2.39 -0.02 1.12 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.17 7.60 -2.39 -0.02 2.15 16 33 H 0.00 0.07 8.00 -2.39 -0.02 0.05 16 34 H 0.06 3.09 5.65 -2.39 -0.01 3.08 16 35 H 0.08 2.48 6.66 -2.39 -0.02 2.46 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.03 1.69 8.14 -2.38 -0.02 1.68 16 42 H 0.06 3.37 6.09 -2.39 -0.01 3.35 16 43 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -62.01 321.87 -0.56 -62.57 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.94 Total: 12.87 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.39 Total: -21.53 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -7.93 Total: -100.75 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.01 -0.56 -62.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.299 kcal (2) G-P(sol) polarization free energy of solvation -62.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds