Wall clock time and date at job start Mon Mar 30 2020 03:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48563 * 110.99953 * 2 1 4 4 C 1.54379 * 104.59136 * 200.95762 * 3 2 1 5 5 C 1.54257 * 105.06223 * 23.84878 * 4 3 2 6 6 C 1.48558 * 111.00305 * 244.57649 * 2 1 3 7 7 H 1.08995 * 110.51108 * 40.20989 * 6 2 1 8 8 C 1.53004 * 110.41167 * 277.82031 * 6 2 1 9 9 N 1.46894 * 109.47087 * 65.83480 * 8 6 2 10 10 C 1.46848 * 111.00409 * 53.14653 * 9 8 6 11 11 C 1.53168 * 109.55848 * 185.83778 * 10 9 8 12 12 C 1.53114 * 109.21158 * 300.86207 * 11 10 9 13 13 C 1.53123 * 109.21326 * 57.62504 * 12 11 10 14 14 C 1.46844 * 110.99933 * 177.36034 * 9 8 6 15 15 H 1.09008 * 109.46376 * 294.17502 * 14 9 8 16 16 C 1.50702 * 109.46719 * 54.14323 * 14 9 8 17 17 H 1.08004 * 119.99297 * 0.05522 * 16 14 9 18 18 C 1.37868 * 120.00283 * 180.02562 * 16 14 9 19 19 N 1.31516 * 120.00096 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00063 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47283 * 59.99835 * 20 18 16 22 22 H 1.48501 * 109.47270 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47478 * 300.00004 * 20 18 16 24 24 H 1.09004 * 109.46889 * 182.04599 * 1 2 3 25 25 H 1.08995 * 109.47314 * 302.04931 * 1 2 3 26 26 H 1.08997 * 109.46654 * 62.05652 * 1 2 3 27 27 H 1.08994 * 110.41146 * 82.17679 * 3 2 1 28 28 H 1.09005 * 110.50747 * 319.78422 * 3 2 1 29 29 H 1.08996 * 110.32036 * 264.94865 * 4 3 2 30 30 H 1.09002 * 110.32135 * 142.74480 * 4 3 2 31 31 H 1.08997 * 110.32613 * 241.09865 * 5 4 3 32 32 H 1.09007 * 110.31968 * 118.89526 * 5 4 3 33 33 H 1.09000 * 109.46844 * 305.83638 * 8 6 2 34 34 H 1.08999 * 109.47174 * 185.83701 * 8 6 2 35 35 H 1.08998 * 109.46194 * 305.86141 * 10 9 8 36 36 H 1.09002 * 109.45622 * 65.83206 * 10 9 8 37 37 H 1.09005 * 109.58810 * 180.91345 * 11 10 9 38 38 H 1.08999 * 109.48809 * 60.74979 * 11 10 9 39 39 H 1.09001 * 109.52504 * 297.69378 * 12 11 10 40 40 H 1.08997 * 109.53057 * 177.56444 * 12 11 10 41 41 H 1.08991 * 109.50226 * 62.25560 * 13 12 11 42 42 H 1.08996 * 109.50453 * 182.34055 * 13 12 11 43 43 H 0.97008 * 119.99912 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3583 6 6 2.0015 -0.5954 -1.2526 7 1 1.4106 -0.2732 -2.1099 8 6 2.0106 -2.1223 -1.1558 9 7 0.6293 -2.6164 -1.0804 10 6 -0.1790 -2.0905 -2.1879 11 6 -1.6410 -2.5057 -1.9979 12 6 -1.7295 -4.0337 -1.9559 13 6 -0.8411 -4.5590 -0.8248 14 6 0.5964 -4.0842 -1.0494 15 1 0.9642 -4.4759 -1.9978 16 6 1.4708 -4.5825 0.0724 17 1 1.9974 -3.8787 0.6999 18 6 1.5979 -5.9367 0.2979 19 7 0.9566 -6.7936 -0.4663 20 14 2.6823 -6.5543 1.6878 21 1 2.1822 -6.0208 2.9803 22 1 2.6490 -8.0386 1.7195 23 1 4.0773 -6.0945 1.4692 24 1 -0.3633 -1.0271 0.0367 25 1 -0.3634 0.5453 0.8710 26 1 -0.3632 0.4816 -0.9078 27 1 2.0078 1.7917 1.0120 28 1 1.4104 2.0229 -0.6592 29 1 4.1483 1.1749 0.2935 30 1 3.6937 2.0995 -1.1699 31 1 4.1484 -0.7693 -0.9350 32 1 3.6938 0.1553 -2.3984 33 1 2.5545 -2.4264 -0.2615 34 1 2.4981 -2.5394 -2.0370 35 1 -0.1096 -1.0028 -2.2035 36 1 0.1924 -2.4916 -3.1309 37 1 -2.2387 -2.1292 -2.8282 38 1 -2.0173 -2.0935 -1.0616 39 1 -1.3896 -4.4445 -2.9066 40 1 -2.7620 -4.3341 -1.7776 41 1 -1.2048 -4.1791 0.1299 42 1 -0.8680 -5.6486 -0.8170 43 1 1.0464 -7.7465 -0.3078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:57 Heat of formation + Delta-G solvation = 8.671180 kcal Electronic energy + Delta-G solvation = -20362.430856 eV Core-core repulsion = 17635.192562 eV Total energy + Delta-G solvation = -2727.238293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28960 -37.41815 -32.90749 -32.84351 -31.83465 -29.59510 -28.87759 -25.64399 -25.03474 -24.12641 -22.17126 -21.09948 -20.58152 -19.30162 -18.60833 -16.41209 -15.86752 -15.09155 -14.93802 -14.45154 -14.21325 -13.63634 -13.44432 -13.21896 -12.94878 -12.57111 -12.30395 -12.04692 -11.99876 -11.81661 -11.19201 -11.11394 -10.88565 -10.75706 -10.71616 -10.59867 -10.49914 -10.38264 -10.26612 -10.10707 -9.92844 -9.52637 -9.19399 -8.67488 -8.32198 -7.99190 -7.02003 -5.95169 -3.98881 3.36904 3.40731 3.44810 4.37908 4.46322 4.77192 4.97712 5.12400 5.18548 5.36253 5.44338 5.60530 5.69776 5.70685 5.79314 5.80143 5.85590 5.94687 5.96027 6.02155 6.13148 6.23318 6.26203 6.37679 6.39085 6.42120 6.47327 6.59963 6.72539 6.84165 6.90380 6.92919 7.19037 7.28973 7.40270 7.50618 7.63713 7.80661 7.91379 8.27841 8.41134 8.69251 9.08975 9.65935 11.11254 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018846 B = 0.008218 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.403909 B = 3406.414317 C = 4419.372010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.492 5.492 3 C 0.027 3.973 4 C -0.122 4.122 5 C -0.121 4.121 6 C 0.061 3.939 7 H 0.046 0.954 8 C 0.083 3.917 9 N -0.525 5.525 10 C 0.047 3.953 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.104 4.104 14 C 0.220 3.780 15 H -0.004 1.004 16 C -0.501 4.501 17 H 0.065 0.935 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.278 1.278 24 H 0.111 0.889 25 H 0.051 0.949 26 H 0.012 0.988 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.023 0.977 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 12.754 -2.648 13.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.215 5.215 3 C -0.102 4.102 4 C -0.160 4.160 5 C -0.160 4.160 6 C -0.048 4.048 7 H 0.064 0.936 8 C -0.046 4.046 9 N -0.249 5.249 10 C -0.082 4.082 11 C -0.148 4.148 12 C -0.160 4.160 13 C -0.142 4.142 14 C 0.115 3.885 15 H 0.013 0.987 16 C -0.540 4.540 17 H 0.083 0.917 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.204 1.204 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.097 12.398 -1.756 12.522 hybrid contribution 0.531 -0.186 -0.831 1.004 sum 0.434 12.212 -2.588 12.491 Atomic orbital electron populations 1.22833 0.87595 1.05251 0.98189 1.65273 1.08779 1.12649 1.34837 1.23139 0.95064 0.91571 1.00384 1.22252 0.96892 0.97343 0.99518 1.22319 0.97191 0.97035 0.99476 1.22894 0.94219 0.96651 0.91031 0.93620 1.21917 0.91271 0.90111 1.01257 1.62060 1.09469 1.12610 1.40802 1.22211 0.94404 0.98606 0.92966 1.21569 0.95585 0.97211 1.00468 1.21683 0.99286 0.94550 1.00473 1.21631 0.94730 1.02959 0.94906 1.19193 0.93376 0.80203 0.95774 0.98666 1.21188 1.26792 0.91352 1.14661 0.91675 1.24921 0.95975 0.96902 0.96381 1.69885 1.42644 1.01981 1.38921 0.86616 0.80974 0.77321 0.82811 1.20229 1.21532 1.20403 0.87029 0.93056 0.96917 0.90724 0.94804 0.91223 0.92058 0.90651 0.91945 0.88935 0.95932 0.92205 0.96649 0.93555 0.91926 0.93536 0.93867 0.93876 0.88943 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.16 60.07 0.49 0.64 16 2 N -0.49 -7.99 5.34 -230.35 -1.23 -9.22 16 3 C 0.03 0.35 6.49 -2.18 -0.01 0.34 16 4 C -0.12 -1.46 7.00 -25.35 -0.18 -1.64 16 5 C -0.12 -1.67 6.55 -25.35 -0.17 -1.83 16 6 C 0.06 0.98 2.27 -66.07 -0.15 0.83 16 7 H 0.05 0.74 5.85 -51.93 -0.30 0.44 16 8 C 0.08 1.64 4.23 -3.82 -0.02 1.62 16 9 N -0.52 -11.02 2.78 -227.99 -0.63 -11.66 16 10 C 0.05 0.85 4.04 -3.77 -0.02 0.84 16 11 C -0.11 -1.92 6.06 -26.59 -0.16 -2.08 16 12 C -0.12 -2.41 6.00 -26.61 -0.16 -2.57 16 13 C -0.10 -2.47 5.14 -26.64 -0.14 -2.61 16 14 C 0.22 5.49 1.83 -68.87 -0.13 5.36 16 15 H 0.00 -0.12 8.14 -51.92 -0.42 -0.54 16 16 C -0.50 -13.62 7.95 -34.44 -0.27 -13.89 16 17 H 0.07 1.79 6.27 -52.48 -0.33 1.46 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -25.44 11.33 55.43 0.63 -24.81 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.11 2.04 5.02 -51.93 -0.26 1.78 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.18 7.10 -51.93 -0.37 -0.19 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.42 8.00 -51.93 -0.42 0.01 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.07 7.86 -51.93 -0.41 0.67 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 2.04 6.24 -51.93 -0.32 1.72 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 1.00 4.01 -51.93 -0.21 0.79 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.08 7.64 -51.93 -0.40 0.69 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.09 2.46 6.10 -51.93 -0.32 2.14 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 311.42 15.07 4.69 4.69 Total: -1.00 -27.70 311.42 -10.10 -37.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.54 Total: 0.16 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.00 Total: -13.46 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -1.24 Total: -45.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.70 -10.10 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.478 kcal (2) G-P(sol) polarization free energy of solvation -27.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds