Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48670 * 111.11287 * 2 1 4 4 C 1.54383 * 104.67317 * 201.09887 * 3 2 1 5 5 C 1.54258 * 105.05936 * 23.77420 * 4 3 2 6 6 C 1.48558 * 110.99596 * 244.58035 * 2 1 3 7 7 H 1.09002 * 110.41155 * 40.14743 * 6 2 1 8 8 C 1.52995 * 110.41557 * 277.82098 * 6 2 1 9 9 N 1.46904 * 109.47336 * 180.10356 * 8 6 2 10 10 C 1.46850 * 110.99641 * 288.41894 * 9 8 6 11 11 C 1.53049 * 109.57216 * 174.19212 * 10 9 8 12 12 C 1.53118 * 109.27602 * 59.08635 * 11 10 9 13 13 C 1.53115 * 109.20998 * 302.43847 * 12 11 10 14 14 C 1.46851 * 111.00205 * 164.21098 * 9 8 6 15 15 H 1.08995 * 109.45022 * 65.82926 * 14 9 8 16 16 C 1.50698 * 109.45833 * 305.85321 * 14 9 8 17 17 H 1.07999 * 120.00526 * 359.94527 * 16 14 9 18 18 C 1.37878 * 119.99483 * 179.97438 * 16 14 9 19 19 N 1.31512 * 120.00481 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47086 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47494 * 119.99995 * 20 18 16 23 23 H 1.48501 * 109.47195 * 240.00097 * 20 18 16 24 24 H 1.09000 * 109.47132 * 180.44206 * 1 2 3 25 25 H 1.09008 * 109.46513 * 300.43999 * 1 2 3 26 26 H 1.08995 * 109.47180 * 60.43984 * 1 2 3 27 27 H 1.09007 * 110.44043 * 82.26066 * 3 2 1 28 28 H 1.08994 * 110.40084 * 319.92194 * 3 2 1 29 29 H 1.08994 * 110.32102 * 264.87671 * 4 3 2 30 30 H 1.09000 * 110.40355 * 142.71537 * 4 3 2 31 31 H 1.09002 * 110.32414 * 241.10120 * 5 4 3 32 32 H 1.09002 * 110.32430 * 118.89221 * 5 4 3 33 33 H 1.08993 * 109.47337 * 60.10089 * 8 6 2 34 34 H 1.08997 * 109.47306 * 300.10132 * 8 6 2 35 35 H 1.08992 * 109.46366 * 294.17720 * 10 9 8 36 36 H 1.08999 * 109.46245 * 54.16042 * 10 9 8 37 37 H 1.08997 * 109.45021 * 299.17372 * 11 10 9 38 38 H 1.08997 * 109.55471 * 179.05844 * 11 10 9 39 39 H 1.09002 * 109.52238 * 182.50550 * 12 11 10 40 40 H 1.08995 * 109.52084 * 62.37254 * 12 11 10 41 41 H 1.09000 * 109.50489 * 177.56306 * 13 12 11 42 42 H 1.09005 * 109.50835 * 297.68217 * 13 12 11 43 43 H 0.96996 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4452 1.2498 -0.5376 5 6 3.4431 -0.0542 -1.3617 6 6 2.0013 -0.5953 -1.2527 7 1 1.4085 -0.2729 -2.1087 8 6 2.0103 -2.1222 -1.1561 9 7 2.5420 -2.6886 -2.4029 10 6 1.5830 -2.5305 -3.5037 11 6 2.2233 -2.9981 -4.8128 12 6 2.6374 -4.4659 -4.6769 13 6 3.5982 -4.6109 -3.4936 14 6 2.9167 -4.0971 -2.2233 15 1 2.0225 -4.6884 -2.0265 16 6 3.8661 -4.2196 -1.0594 17 1 4.1621 -3.3389 -0.5089 18 6 4.3573 -5.4561 -0.6977 19 7 3.9978 -6.5285 -1.3687 20 14 5.5336 -5.6081 0.7454 21 1 5.7778 -4.2644 1.3286 22 1 4.9387 -6.4945 1.7778 23 1 6.8189 -6.1864 0.2777 24 1 -0.3633 -1.0276 0.0079 25 1 -0.3632 0.5207 0.8861 26 1 -0.3633 0.5070 -0.8939 27 1 2.0133 1.7916 1.0121 28 1 1.4122 2.0229 -0.6577 29 1 4.1520 1.1743 0.2887 30 1 3.6960 2.0991 -1.1732 31 1 4.1489 -0.7697 -0.9400 32 1 3.6912 0.1552 -2.4023 33 1 0.9939 -2.4823 -0.9979 34 1 2.6389 -2.4297 -0.3204 35 1 0.6951 -3.1292 -3.3006 36 1 1.3012 -1.4813 -3.5919 37 1 3.1028 -2.3899 -5.0241 38 1 1.5056 -2.8962 -5.6267 39 1 3.1341 -4.7904 -5.5913 40 1 1.7530 -5.0794 -4.5053 41 1 3.8622 -5.6607 -3.3657 42 1 4.5001 -4.0289 -3.6836 43 1 4.3430 -7.3984 -1.1140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = 0.692948 kcal Electronic energy + Delta-G solvation = -20114.453143 eV Core-core repulsion = 17386.868888 eV Total energy + Delta-G solvation = -2727.584256 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.07054 -37.57644 -32.89777 -32.87420 -31.86570 -29.52212 -28.88016 -25.56573 -25.20608 -24.27250 -22.04311 -21.07587 -20.64986 -19.30774 -18.56371 -16.35340 -15.83879 -15.18639 -15.07602 -14.38195 -13.86894 -13.67532 -13.51283 -13.33460 -13.24448 -12.58981 -12.39249 -12.13139 -12.02668 -11.79031 -11.43785 -11.01336 -10.94002 -10.87821 -10.66873 -10.64794 -10.45590 -10.25711 -10.20555 -10.05105 -9.86111 -9.53718 -9.17869 -8.68513 -8.34280 -8.23717 -7.09208 -5.97192 -4.00987 3.32995 3.41072 3.46227 4.15698 4.45734 4.89934 5.04705 5.16994 5.25635 5.35553 5.47125 5.53875 5.58302 5.68652 5.72163 5.77582 5.82834 5.88514 5.99218 6.05700 6.12655 6.23796 6.26714 6.40700 6.42864 6.45766 6.50742 6.61587 6.79351 6.81973 6.86673 6.91963 7.18339 7.19088 7.30652 7.36171 7.64348 7.79756 7.88561 8.26760 8.39756 8.67251 9.06463 9.63724 11.09242 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.008248 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.344898 B = 3394.050520 C = 4443.041776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.512 5.512 3 C 0.034 3.966 4 C -0.128 4.128 5 C -0.103 4.103 6 C 0.070 3.930 7 H 0.041 0.959 8 C 0.077 3.923 9 N -0.530 5.530 10 C 0.057 3.943 11 C -0.110 4.110 12 C -0.122 4.122 13 C -0.104 4.104 14 C 0.221 3.779 15 H -0.004 1.004 16 C -0.502 4.502 17 H 0.066 0.934 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.285 1.285 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.022 0.978 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.014 0.986 34 H 0.100 0.900 35 H 0.016 0.984 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.042 0.958 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 11.823 -1.629 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.237 5.237 3 C -0.094 4.094 4 C -0.166 4.166 5 C -0.141 4.141 6 C -0.038 4.038 7 H 0.059 0.941 8 C -0.052 4.052 9 N -0.255 5.255 10 C -0.072 4.072 11 C -0.148 4.148 12 C -0.160 4.160 13 C -0.142 4.142 14 C 0.115 3.885 15 H 0.014 0.986 16 C -0.540 4.540 17 H 0.084 0.916 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.212 1.212 23 H -0.211 1.211 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.118 0.882 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.061 0.939 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.937 11.574 -1.271 12.291 hybrid contribution -0.583 -0.174 0.179 0.634 sum -4.520 11.400 -1.092 12.312 Atomic orbital electron populations 1.22475 0.88631 1.02198 0.99916 1.65229 1.07527 1.14503 1.36394 1.23077 0.95611 0.90258 1.00424 1.22352 0.96115 0.98350 0.99824 1.22145 0.96643 0.95703 0.99603 1.22714 0.95377 0.96463 0.89288 0.94077 1.21876 0.97847 0.90603 0.94829 1.61895 1.38584 1.21743 1.03299 1.22001 0.93670 0.98535 0.92956 1.21528 0.99837 0.97658 0.95770 1.21682 0.99961 0.94932 0.99436 1.21632 0.96510 1.03644 0.92447 1.19172 0.94337 0.81103 0.93864 0.98623 1.21234 1.26652 0.93101 1.13012 0.91599 1.24923 0.96601 0.95849 0.96792 1.69896 1.44827 0.98453 1.40075 0.86512 0.80761 0.78155 0.82450 1.19616 1.21238 1.21143 0.91183 0.91798 0.95960 0.90687 0.94543 0.91308 0.92038 0.89969 0.91658 0.96813 0.88185 0.96538 0.92871 0.91945 0.93513 0.93838 0.93508 0.88902 0.93868 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.42 60.06 0.57 0.79 16 2 N -0.51 -7.88 5.34 -230.25 -1.23 -9.12 16 3 C 0.03 0.45 6.50 -2.12 -0.01 0.43 16 4 C -0.13 -1.69 7.00 -25.35 -0.18 -1.87 16 5 C -0.10 -1.65 6.32 -25.35 -0.16 -1.81 16 6 C 0.07 1.17 2.28 -66.07 -0.15 1.02 16 7 H 0.04 0.68 6.38 -51.93 -0.33 0.35 16 8 C 0.08 1.55 4.31 -3.82 -0.02 1.53 16 9 N -0.53 -11.26 4.20 -228.08 -0.96 -12.22 16 10 C 0.06 1.07 5.30 -3.83 -0.02 1.05 16 11 C -0.11 -1.94 6.10 -26.64 -0.16 -2.11 16 12 C -0.12 -2.43 6.00 -26.61 -0.16 -2.59 16 13 C -0.10 -2.48 5.14 -26.65 -0.14 -2.62 16 14 C 0.22 5.52 1.83 -68.87 -0.13 5.40 16 15 H 0.00 -0.11 8.14 -51.93 -0.42 -0.53 16 16 C -0.50 -13.52 7.72 -34.44 -0.27 -13.79 16 17 H 0.07 1.78 6.39 -52.49 -0.34 1.45 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -25.31 11.33 55.43 0.63 -24.69 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.02 0.27 7.97 -51.93 -0.41 -0.14 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.44 7.98 -51.93 -0.41 0.02 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.52 7.82 -51.93 -0.41 1.11 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.01 0.28 7.43 -51.93 -0.39 -0.10 16 34 H 0.10 2.28 5.65 -51.93 -0.29 1.99 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.90 6.47 -51.93 -0.34 0.56 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 2.46 6.09 -51.93 -0.32 2.15 16 42 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -27.64 320.65 -10.50 -38.14 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.83 Total: -0.27 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -0.92 Total: -13.03 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -1.56 Total: -46.02 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.64 -10.50 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.833 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds