Wall clock time and date at job start Mon Mar 30 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48670 * 111.11287 * 2 1 4 4 C 1.54383 * 104.67317 * 201.09887 * 3 2 1 5 5 C 1.54258 * 105.05936 * 23.77420 * 4 3 2 6 6 C 1.48558 * 110.99596 * 244.58035 * 2 1 3 7 7 H 1.09002 * 110.41155 * 40.14743 * 6 2 1 8 8 C 1.52995 * 110.41557 * 277.82098 * 6 2 1 9 9 N 1.46904 * 109.47336 * 180.10356 * 8 6 2 10 10 C 1.46850 * 110.99641 * 288.41894 * 9 8 6 11 11 C 1.53049 * 109.57216 * 174.19212 * 10 9 8 12 12 C 1.53118 * 109.27602 * 59.08635 * 11 10 9 13 13 C 1.53115 * 109.20998 * 302.43847 * 12 11 10 14 14 C 1.46851 * 111.00205 * 164.21098 * 9 8 6 15 15 H 1.08995 * 109.45022 * 65.82926 * 14 9 8 16 16 C 1.50698 * 109.45833 * 305.85321 * 14 9 8 17 17 H 1.07999 * 120.00526 * 359.94527 * 16 14 9 18 18 C 1.37878 * 119.99483 * 179.97438 * 16 14 9 19 19 N 1.31512 * 120.00481 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99963 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47086 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47494 * 119.99995 * 20 18 16 23 23 H 1.48501 * 109.47195 * 240.00097 * 20 18 16 24 24 H 1.09000 * 109.47132 * 180.44206 * 1 2 3 25 25 H 1.09008 * 109.46513 * 300.43999 * 1 2 3 26 26 H 1.08995 * 109.47180 * 60.43984 * 1 2 3 27 27 H 1.09007 * 110.44043 * 82.26066 * 3 2 1 28 28 H 1.08994 * 110.40084 * 319.92194 * 3 2 1 29 29 H 1.08994 * 110.32102 * 264.87671 * 4 3 2 30 30 H 1.09000 * 110.40355 * 142.71537 * 4 3 2 31 31 H 1.09002 * 110.32414 * 241.10120 * 5 4 3 32 32 H 1.09002 * 110.32430 * 118.89221 * 5 4 3 33 33 H 1.08993 * 109.47337 * 60.10089 * 8 6 2 34 34 H 1.08997 * 109.47306 * 300.10132 * 8 6 2 35 35 H 1.08992 * 109.46366 * 294.17720 * 10 9 8 36 36 H 1.08999 * 109.46245 * 54.16042 * 10 9 8 37 37 H 1.08997 * 109.45021 * 299.17372 * 11 10 9 38 38 H 1.08997 * 109.55471 * 179.05844 * 11 10 9 39 39 H 1.09002 * 109.52238 * 182.50550 * 12 11 10 40 40 H 1.08995 * 109.52084 * 62.37254 * 12 11 10 41 41 H 1.09000 * 109.50489 * 177.56306 * 13 12 11 42 42 H 1.09005 * 109.50835 * 297.68217 * 13 12 11 43 43 H 0.96996 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0045 1.3869 0.0000 4 6 3.4452 1.2498 -0.5376 5 6 3.4431 -0.0542 -1.3617 6 6 2.0013 -0.5953 -1.2527 7 1 1.4085 -0.2729 -2.1087 8 6 2.0103 -2.1222 -1.1561 9 7 2.5420 -2.6886 -2.4029 10 6 1.5830 -2.5305 -3.5037 11 6 2.2233 -2.9981 -4.8128 12 6 2.6374 -4.4659 -4.6769 13 6 3.5982 -4.6109 -3.4936 14 6 2.9167 -4.0971 -2.2233 15 1 2.0225 -4.6884 -2.0265 16 6 3.8661 -4.2196 -1.0594 17 1 4.1621 -3.3389 -0.5089 18 6 4.3573 -5.4561 -0.6977 19 7 3.9978 -6.5285 -1.3687 20 14 5.5336 -5.6081 0.7454 21 1 5.7778 -4.2644 1.3286 22 1 4.9387 -6.4945 1.7778 23 1 6.8189 -6.1864 0.2777 24 1 -0.3633 -1.0276 0.0079 25 1 -0.3632 0.5207 0.8861 26 1 -0.3633 0.5070 -0.8939 27 1 2.0133 1.7916 1.0121 28 1 1.4122 2.0229 -0.6577 29 1 4.1520 1.1743 0.2887 30 1 3.6960 2.0991 -1.1732 31 1 4.1489 -0.7697 -0.9400 32 1 3.6912 0.1552 -2.4023 33 1 0.9939 -2.4823 -0.9979 34 1 2.6389 -2.4297 -0.3204 35 1 0.6951 -3.1292 -3.3006 36 1 1.3012 -1.4813 -3.5919 37 1 3.1028 -2.3899 -5.0241 38 1 1.5056 -2.8962 -5.6267 39 1 3.1341 -4.7904 -5.5913 40 1 1.7530 -5.0794 -4.5053 41 1 3.8622 -5.6607 -3.3657 42 1 4.5001 -4.0289 -3.6836 43 1 4.3430 -7.3984 -1.1140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:02 Heat of formation + Delta-G solvation = -16.854883 kcal Electronic energy + Delta-G solvation = -20115.214074 eV Core-core repulsion = 17386.868888 eV Total energy + Delta-G solvation = -2728.345187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46864 -39.10618 -34.91471 -34.47745 -32.99329 -31.37106 -30.28907 -27.25927 -26.61790 -25.77764 -23.65463 -22.82291 -21.76081 -20.74198 -20.28270 -18.39822 -17.27735 -16.70714 -16.39187 -16.05473 -15.49539 -15.07707 -14.96756 -14.82669 -14.60958 -14.31532 -13.97310 -13.72574 -13.51294 -13.13674 -12.86166 -12.65236 -12.55826 -12.35621 -12.20401 -12.10104 -11.98274 -11.93269 -11.80090 -11.64475 -11.33283 -11.32503 -10.85899 -10.67713 -10.38635 -9.39965 -8.87416 -8.09095 -6.19658 1.39640 1.41733 1.53721 2.42773 2.91580 3.18756 3.58101 3.80687 3.89455 4.07452 4.18991 4.19335 4.27115 4.37957 4.40750 4.55663 4.57621 4.61655 4.67676 4.79422 4.83973 4.86458 4.89506 4.98573 5.03918 5.07597 5.12059 5.15982 5.23192 5.27502 5.32508 5.37290 5.46445 5.49765 5.67237 5.79001 5.84483 6.00317 6.15827 6.32360 6.46427 6.81378 6.96106 7.48621 8.96392 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016880 B = 0.008248 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.344898 B = 3394.050520 C = 4443.041776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.037 3.963 4 C -0.122 4.122 5 C -0.103 4.103 6 C 0.081 3.919 7 H 0.051 0.949 8 C 0.085 3.915 9 N -0.530 5.530 10 C 0.054 3.946 11 C -0.103 4.103 12 C -0.118 4.118 13 C -0.098 4.098 14 C 0.228 3.772 15 H -0.048 1.048 16 C -0.513 4.513 17 H 0.058 0.942 18 C 0.012 3.988 19 N -0.920 5.920 20 Si 0.954 3.046 21 H -0.268 1.268 22 H -0.283 1.283 23 H -0.279 1.279 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.001 0.999 34 H 0.064 0.936 35 H 0.006 0.994 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 14.261 -2.206 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.141 4.141 6 C -0.028 4.028 7 H 0.069 0.931 8 C -0.044 4.044 9 N -0.255 5.255 10 C -0.074 4.074 11 C -0.140 4.140 12 C -0.155 4.155 13 C -0.137 4.137 14 C 0.121 3.879 15 H -0.030 1.030 16 C -0.552 4.552 17 H 0.076 0.924 18 C -0.187 4.187 19 N -0.560 5.560 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.205 1.205 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.025 0.975 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.230 14.034 -1.849 14.774 hybrid contribution -0.536 -0.938 0.384 1.147 sum -4.767 13.096 -1.466 14.013 Atomic orbital electron populations 1.22489 0.87384 1.01728 1.01473 1.65170 1.08943 1.16386 1.35544 1.23145 0.95226 0.88926 1.01732 1.22339 0.96561 0.97388 0.99709 1.22080 0.95259 0.96552 1.00228 1.22493 0.96243 0.93569 0.90496 0.93129 1.21752 0.95959 0.93420 0.93261 1.61890 1.39966 1.19047 1.04552 1.22146 0.92715 1.00066 0.92468 1.21512 1.00902 0.95515 0.96113 1.21611 0.98660 0.96951 0.98321 1.21435 0.97101 1.01257 0.93866 1.18946 0.92210 0.82815 0.93959 1.03046 1.21479 1.26919 0.92964 1.13813 0.92393 1.25666 0.98177 0.95611 0.99217 1.70028 1.45830 0.98777 1.41347 0.85562 0.78867 0.78096 0.79478 1.19266 1.20921 1.20485 0.92747 0.89852 0.94689 0.89293 0.92781 0.91440 0.89533 0.93339 0.91165 0.98060 0.91713 0.97545 0.90151 0.91408 0.89820 0.91638 0.94357 0.92091 0.94747 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.42 127.69 1.20 1.64 16 2 N -0.54 -15.65 5.34 -882.36 -4.71 -20.37 16 3 C 0.04 0.85 6.50 86.43 0.56 1.41 16 4 C -0.12 -2.90 7.00 31.49 0.22 -2.68 16 5 C -0.10 -3.20 6.32 31.49 0.20 -3.00 16 6 C 0.08 2.61 2.28 45.06 0.10 2.72 16 7 H 0.05 1.56 6.38 -2.39 -0.02 1.54 16 8 C 0.08 3.50 4.31 86.30 0.37 3.87 16 9 N -0.53 -22.88 4.20 -875.50 -3.67 -26.56 16 10 C 0.05 1.96 5.30 86.33 0.46 2.42 16 11 C -0.10 -3.38 6.10 30.65 0.19 -3.19 16 12 C -0.12 -4.59 6.00 30.67 0.18 -4.41 16 13 C -0.10 -4.81 5.14 30.65 0.16 -4.65 16 14 C 0.23 11.86 1.83 44.19 0.08 11.94 16 15 H -0.05 -2.86 8.14 -2.39 -0.02 -2.88 16 16 C -0.51 -28.89 7.72 25.60 0.20 -28.69 16 17 H 0.06 3.29 6.39 -2.91 -0.02 3.27 16 18 C 0.01 0.66 5.30 84.66 0.45 1.11 16 19 N -0.92 -54.05 11.33 21.45 0.24 -53.80 16 20 Si 0.95 44.97 29.54 68.60 2.03 46.99 16 21 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H 0.05 1.48 7.52 -2.39 -0.02 1.47 16 25 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.03 0.77 7.97 -2.39 -0.02 0.75 16 27 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.05 1.07 7.98 -2.39 -0.02 1.05 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.82 7.82 -2.39 -0.02 1.80 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.00 0.05 7.43 -2.39 -0.02 0.03 16 34 H 0.06 3.12 5.65 -2.39 -0.01 3.10 16 35 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.08 2.49 6.47 -2.39 -0.02 2.48 16 37 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 3.37 6.09 -2.39 -0.01 3.36 16 42 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -62.20 320.65 -0.80 -63.00 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.95 Total: 12.25 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.37 Total: -21.52 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -8.15 Total: -100.73 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.20 -0.80 -63.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.149 kcal (2) G-P(sol) polarization free energy of solvation -62.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds