Wall clock time and date at job start Mon Mar 30 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46961 * 110.99646 * 2 1 4 4 C 1.53048 * 109.36457 * 176.81349 * 3 2 1 5 5 N 1.46960 * 109.36283 * 58.39938 * 4 3 2 6 6 C 1.46903 * 110.99674 * 176.81256 * 5 4 3 7 7 C 1.52997 * 109.47426 * 307.71596 * 6 5 4 8 8 C 1.54271 * 110.03167 * 295.25738 * 7 6 5 9 9 C 1.54968 * 104.15762 * 217.13376 * 8 7 6 10 10 C 1.54888 * 102.77781 * 37.88712 * 9 8 7 11 11 C 1.53868 * 110.03680 * 178.03588 * 7 6 5 12 12 C 1.46951 * 110.88253 * 300.68015 * 5 4 3 13 13 C 1.46956 * 111.00064 * 236.20422 * 2 1 3 14 14 H 1.09006 * 109.49137 * 63.19282 * 13 2 1 15 15 C 1.50704 * 109.48713 * 303.15339 * 13 2 1 16 16 H 1.08001 * 120.00059 * 334.59683 * 15 13 2 17 17 C 1.37878 * 120.00242 * 154.59761 * 15 13 2 18 18 N 1.31513 * 119.99492 * 5.02393 * 17 15 13 19 19 Si 1.86794 * 120.00042 * 185.02209 * 17 15 13 20 20 H 1.48495 * 109.47514 * 90.00179 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00309 * 19 17 15 22 22 H 1.48500 * 109.47324 * 329.99752 * 19 17 15 23 23 H 1.09000 * 109.47211 * 179.21050 * 1 2 3 24 24 H 1.08998 * 109.47634 * 59.20779 * 1 2 3 25 25 H 1.08997 * 109.47211 * 299.20310 * 1 2 3 26 26 H 1.09006 * 109.48607 * 296.77875 * 3 2 1 27 27 H 1.08998 * 109.48843 * 56.84199 * 3 2 1 28 28 H 1.08998 * 109.48965 * 298.43384 * 4 3 2 29 29 H 1.08998 * 109.49079 * 178.36663 * 4 3 2 30 30 H 1.08998 * 109.46960 * 67.72085 * 6 5 4 31 31 H 1.08999 * 109.46905 * 187.71679 * 6 5 4 32 32 H 1.09006 * 110.01383 * 56.64263 * 7 6 5 33 33 H 1.09002 * 110.48744 * 335.77686 * 8 7 6 34 34 H 1.09002 * 110.48844 * 98.42378 * 8 7 6 35 35 H 1.08998 * 110.71914 * 279.57354 * 9 8 7 36 36 H 1.09002 * 110.92037 * 156.29177 * 9 8 7 37 37 H 1.08995 * 110.48847 * 203.40347 * 10 9 8 38 38 H 1.09003 * 110.60249 * 80.81626 * 10 9 8 39 39 H 1.09000 * 110.03733 * 238.57159 * 11 7 6 40 40 H 1.09004 * 110.02768 * 359.95367 * 11 7 6 41 41 H 1.09000 * 109.49275 * 299.35537 * 12 5 4 42 42 H 1.09006 * 109.49243 * 179.28806 * 12 5 4 43 43 H 0.97000 * 119.99633 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 0.0803 5 7 4.0500 0.5660 -1.0599 6 6 5.5190 0.5661 -1.0599 7 6 6.0290 2.0052 -0.9614 8 6 5.6221 2.7975 -2.2210 9 6 6.8357 3.7208 -2.4966 10 6 8.0419 2.8160 -2.1422 11 6 7.5668 2.0173 -0.9109 12 6 3.5234 -0.8059 -1.0599 13 6 1.9957 -0.7631 -1.1401 14 1 1.6934 -0.2822 -2.0705 15 6 1.4505 -2.1675 -1.1000 16 1 1.1394 -2.5994 -0.1602 17 6 1.3488 -2.9012 -2.2629 18 7 1.8182 -2.4140 -3.3907 19 14 0.5446 -4.5869 -2.2365 20 1 -0.9113 -4.4449 -2.4924 21 1 1.1511 -5.4412 -3.2889 22 1 0.7546 -5.2148 -0.9073 23 1 -0.3633 -1.0276 -0.0142 24 1 -0.3634 0.5261 -0.8827 25 1 -0.3633 0.5014 0.8970 26 1 1.6936 1.8774 -0.9174 27 1 1.6012 1.9129 0.8602 28 1 3.8253 0.8481 1.0105 29 1 3.9176 2.3450 0.0512 30 1 5.8823 -0.0073 -0.2071 31 1 5.8823 0.1143 -1.9829 32 1 5.6224 2.4850 -0.0710 33 1 5.4587 2.1216 -3.0605 34 1 4.7276 3.3895 -2.0270 35 1 6.8077 4.5979 -1.8501 36 1 6.8696 4.0165 -3.5452 37 1 8.9125 3.4218 -1.8912 38 1 8.2721 2.1428 -2.9680 39 1 7.9066 2.5036 0.0035 40 1 7.9498 0.9977 -0.9557 41 1 3.8253 -1.3114 -0.1425 42 1 3.9178 -1.3469 -1.9202 43 1 1.7464 -2.9300 -4.2090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259902900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:20 Heat of formation + Delta-G solvation = -4.470788 kcal Electronic energy + Delta-G solvation = -19761.986468 eV Core-core repulsion = 17034.178296 eV Total energy + Delta-G solvation = -2727.808172 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.99458 -37.51195 -34.50701 -32.75308 -29.96983 -29.77250 -28.50609 -27.03592 -24.98758 -23.79403 -22.28985 -21.36782 -20.51659 -19.14614 -18.58738 -16.50181 -15.94107 -15.00717 -14.95092 -14.56882 -14.03363 -13.86121 -13.73280 -13.39757 -13.20461 -13.04015 -12.66642 -12.05605 -11.51840 -11.22511 -11.17760 -11.05498 -10.96513 -10.89511 -10.83633 -10.68551 -10.62887 -10.52423 -10.40159 -10.22907 -9.98461 -9.82599 -9.56424 -8.97514 -8.45651 -7.50339 -7.08691 -6.04311 -4.08833 3.29651 3.36743 3.40352 4.39144 4.54882 4.78654 4.83838 4.94699 5.10505 5.31307 5.40581 5.56709 5.64925 5.72007 5.74443 5.77762 5.84638 5.93611 5.97659 6.00132 6.03213 6.16468 6.18740 6.26586 6.29795 6.35749 6.42606 6.46073 6.55481 6.62543 6.70357 6.77995 6.83305 6.94242 7.31490 7.60896 7.80092 7.84397 7.97197 8.13333 8.29290 8.66044 9.05650 9.57432 11.03707 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.005683 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.864116 B = 4926.004251 C = 5531.337495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.060 3.940 5 N -0.540 5.540 6 C 0.064 3.936 7 C -0.094 4.094 8 C -0.104 4.104 9 C -0.128 4.128 10 C -0.123 4.123 11 C -0.120 4.120 12 C 0.079 3.921 13 C 0.215 3.785 14 H 0.028 0.972 15 C -0.508 4.508 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.077 0.923 24 H 0.009 0.991 25 H 0.039 0.961 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.077 0.923 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 9.834 3.555 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.068 4.068 5 N -0.264 5.264 6 C -0.064 4.064 7 C -0.112 4.112 8 C -0.142 4.142 9 C -0.166 4.166 10 C -0.161 4.161 11 C -0.158 4.158 12 C -0.049 4.049 13 C 0.109 3.891 14 H 0.046 0.954 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.524 5.524 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.096 0.904 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.101 9.769 3.353 13.127 hybrid contribution -0.384 -0.972 -0.074 1.047 sum 7.717 8.798 3.280 12.153 Atomic orbital electron populations 1.22086 0.88636 1.02314 0.97450 1.62278 1.07092 1.10771 1.47061 1.22039 0.94268 0.91776 0.99059 1.22103 0.94922 0.97606 0.92193 1.62344 1.05667 1.16876 1.41543 1.22185 0.89035 0.94976 1.00189 1.21893 0.94273 0.96171 0.98892 1.22274 0.96732 0.97446 0.97732 1.22555 0.95472 0.97936 1.00624 1.22334 0.97572 0.98160 0.97993 1.22182 0.95514 1.00245 0.97881 1.22388 0.97868 0.85293 0.99335 1.19331 0.89428 0.93002 0.87346 0.95430 1.21037 1.42082 0.97947 0.93691 0.91979 1.25004 0.95225 0.98210 0.95493 1.69988 1.45104 1.38043 0.99277 0.86572 0.79562 0.83958 0.77790 1.20648 1.21299 1.19793 0.90390 0.97204 0.94199 0.95355 0.92341 0.95324 0.91459 0.95940 0.91142 0.91160 0.90958 0.91912 0.92106 0.92017 0.92341 0.91766 0.92295 0.91854 0.96374 0.90510 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 9.36 60.06 0.56 1.47 16 2 N -0.55 -12.30 4.78 -236.12 -1.13 -13.43 16 3 C 0.06 1.11 5.62 -3.77 -0.02 1.09 16 4 C 0.06 1.09 5.14 -3.77 -0.02 1.07 16 5 N -0.54 -10.73 4.56 -234.47 -1.07 -11.80 16 6 C 0.06 1.08 4.18 -3.82 -0.02 1.06 16 7 C -0.09 -1.28 2.45 -89.50 -0.22 -1.50 16 8 C -0.10 -1.42 6.13 -25.03 -0.15 -1.57 16 9 C -0.13 -1.43 6.91 -24.70 -0.17 -1.60 16 10 C -0.12 -1.31 6.83 -25.07 -0.17 -1.48 16 11 C -0.12 -1.39 6.46 -25.61 -0.17 -1.56 16 12 C 0.08 1.87 4.88 -3.77 -0.02 1.85 16 13 C 0.22 5.50 1.87 -68.81 -0.13 5.37 16 14 H 0.03 0.81 7.68 -51.93 -0.40 0.41 16 15 C -0.51 -13.89 7.01 -34.44 -0.24 -14.14 16 16 H 0.06 1.72 7.57 -52.49 -0.40 1.32 16 17 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 18 N -0.89 -25.42 13.01 55.43 0.72 -24.70 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H 0.08 1.72 6.68 -51.93 -0.35 1.37 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.06 5.94 -51.93 -0.31 0.75 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 32 H 0.07 0.96 6.08 -51.93 -0.32 0.64 16 33 H 0.07 1.11 7.81 -51.93 -0.41 0.70 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.74 7.67 -51.93 -0.40 0.34 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -28.16 325.30 -10.50 -38.66 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.04 Total: -1.49 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.86 Total: -8.28 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -1.48 Total: -49.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.16 -10.50 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.188 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds