Wall clock time and date at job start Mon Mar 30 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46961 * 110.99646 * 2 1 4 4 C 1.53048 * 109.36457 * 176.81349 * 3 2 1 5 5 N 1.46960 * 109.36283 * 58.39938 * 4 3 2 6 6 C 1.46903 * 110.99674 * 176.81256 * 5 4 3 7 7 C 1.52997 * 109.47426 * 307.71596 * 6 5 4 8 8 C 1.54271 * 110.03167 * 295.25738 * 7 6 5 9 9 C 1.54968 * 104.15762 * 217.13376 * 8 7 6 10 10 C 1.54888 * 102.77781 * 37.88712 * 9 8 7 11 11 C 1.53868 * 110.03680 * 178.03588 * 7 6 5 12 12 C 1.46951 * 110.88253 * 300.68015 * 5 4 3 13 13 C 1.46956 * 111.00064 * 236.20422 * 2 1 3 14 14 H 1.09006 * 109.49137 * 63.19282 * 13 2 1 15 15 C 1.50704 * 109.48713 * 303.15339 * 13 2 1 16 16 H 1.08001 * 120.00059 * 334.59683 * 15 13 2 17 17 C 1.37878 * 120.00242 * 154.59761 * 15 13 2 18 18 N 1.31513 * 119.99492 * 5.02393 * 17 15 13 19 19 Si 1.86794 * 120.00042 * 185.02209 * 17 15 13 20 20 H 1.48495 * 109.47514 * 90.00179 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00309 * 19 17 15 22 22 H 1.48500 * 109.47324 * 329.99752 * 19 17 15 23 23 H 1.09000 * 109.47211 * 179.21050 * 1 2 3 24 24 H 1.08998 * 109.47634 * 59.20779 * 1 2 3 25 25 H 1.08997 * 109.47211 * 299.20310 * 1 2 3 26 26 H 1.09006 * 109.48607 * 296.77875 * 3 2 1 27 27 H 1.08998 * 109.48843 * 56.84199 * 3 2 1 28 28 H 1.08998 * 109.48965 * 298.43384 * 4 3 2 29 29 H 1.08998 * 109.49079 * 178.36663 * 4 3 2 30 30 H 1.08998 * 109.46960 * 67.72085 * 6 5 4 31 31 H 1.08999 * 109.46905 * 187.71679 * 6 5 4 32 32 H 1.09006 * 110.01383 * 56.64263 * 7 6 5 33 33 H 1.09002 * 110.48744 * 335.77686 * 8 7 6 34 34 H 1.09002 * 110.48844 * 98.42378 * 8 7 6 35 35 H 1.08998 * 110.71914 * 279.57354 * 9 8 7 36 36 H 1.09002 * 110.92037 * 156.29177 * 9 8 7 37 37 H 1.08995 * 110.48847 * 203.40347 * 10 9 8 38 38 H 1.09003 * 110.60249 * 80.81626 * 10 9 8 39 39 H 1.09000 * 110.03733 * 238.57159 * 11 7 6 40 40 H 1.09004 * 110.02768 * 359.95367 * 11 7 6 41 41 H 1.09000 * 109.49275 * 299.35537 * 12 5 4 42 42 H 1.09006 * 109.49243 * 179.28806 * 12 5 4 43 43 H 0.97000 * 119.99633 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5233 1.3292 0.0803 5 7 4.0500 0.5660 -1.0599 6 6 5.5190 0.5661 -1.0599 7 6 6.0290 2.0052 -0.9614 8 6 5.6221 2.7975 -2.2210 9 6 6.8357 3.7208 -2.4966 10 6 8.0419 2.8160 -2.1422 11 6 7.5668 2.0173 -0.9109 12 6 3.5234 -0.8059 -1.0599 13 6 1.9957 -0.7631 -1.1401 14 1 1.6934 -0.2822 -2.0705 15 6 1.4505 -2.1675 -1.1000 16 1 1.1394 -2.5994 -0.1602 17 6 1.3488 -2.9012 -2.2629 18 7 1.8182 -2.4140 -3.3907 19 14 0.5446 -4.5869 -2.2365 20 1 -0.9113 -4.4449 -2.4924 21 1 1.1511 -5.4412 -3.2889 22 1 0.7546 -5.2148 -0.9073 23 1 -0.3633 -1.0276 -0.0142 24 1 -0.3634 0.5261 -0.8827 25 1 -0.3633 0.5014 0.8970 26 1 1.6936 1.8774 -0.9174 27 1 1.6012 1.9129 0.8602 28 1 3.8253 0.8481 1.0105 29 1 3.9176 2.3450 0.0512 30 1 5.8823 -0.0073 -0.2071 31 1 5.8823 0.1143 -1.9829 32 1 5.6224 2.4850 -0.0710 33 1 5.4587 2.1216 -3.0605 34 1 4.7276 3.3895 -2.0270 35 1 6.8077 4.5979 -1.8501 36 1 6.8696 4.0165 -3.5452 37 1 8.9125 3.4218 -1.8912 38 1 8.2721 2.1428 -2.9680 39 1 7.9066 2.5036 0.0035 40 1 7.9498 0.9977 -0.9557 41 1 3.8253 -1.3114 -0.1425 42 1 3.9178 -1.3469 -1.9202 43 1 1.7464 -2.9300 -4.2090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259902900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:20 Heat of formation + Delta-G solvation = -22.345248 kcal Electronic energy + Delta-G solvation = -19762.761562 eV Core-core repulsion = 17034.178296 eV Total energy + Delta-G solvation = -2728.583267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.45706 -38.86102 -36.07730 -34.79044 -31.66551 -31.20524 -29.48543 -28.62652 -26.93108 -25.25066 -24.04209 -22.97495 -21.47263 -20.55004 -20.11814 -18.51637 -17.34275 -16.68259 -16.27758 -16.05115 -15.61878 -15.41316 -15.30766 -15.13081 -14.71973 -14.15438 -14.03970 -13.89245 -13.21387 -12.92087 -12.76586 -12.67753 -12.54443 -12.36454 -12.08413 -11.98920 -11.90414 -11.85111 -11.77239 -11.58153 -11.42846 -11.32906 -11.22647 -10.88045 -10.52530 -9.14239 -8.93278 -8.16047 -6.27953 1.40882 1.41307 1.52448 2.40189 3.00700 3.22441 3.43621 3.78997 3.79877 3.86861 4.19598 4.31500 4.37261 4.43296 4.52893 4.59983 4.65688 4.67450 4.69985 4.72013 4.80614 4.84875 4.91557 4.95003 4.96929 5.01412 5.04982 5.12940 5.18033 5.19968 5.30028 5.39658 5.45979 5.53395 5.56217 5.59216 5.69930 6.04024 6.24610 6.29273 6.45851 6.75503 6.92937 7.42564 8.91939 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.026946 B = 0.005683 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.864116 B = 4926.004251 C = 5531.337495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.555 5.555 3 C 0.055 3.945 4 C 0.064 3.936 5 N -0.550 5.550 6 C 0.066 3.934 7 C -0.087 4.087 8 C -0.107 4.107 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.096 3.904 13 C 0.223 3.777 14 H -0.019 1.019 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.267 1.267 23 H 0.059 0.941 24 H 0.001 0.999 25 H 0.077 0.923 26 H 0.016 0.984 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.099 0.901 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.007 0.993 42 H 0.043 0.957 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 11.103 5.035 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.280 5.280 3 C -0.073 4.073 4 C -0.064 4.064 5 N -0.274 5.274 6 C -0.061 4.061 7 C -0.105 4.105 8 C -0.144 4.144 9 C -0.159 4.159 10 C -0.159 4.159 11 C -0.156 4.156 12 C -0.032 4.032 13 C 0.116 3.884 14 H -0.001 1.001 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.184 4.184 18 N -0.559 5.559 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.077 0.923 24 H 0.019 0.981 25 H 0.096 0.904 26 H 0.034 0.966 27 H 0.111 0.889 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.789 11.056 4.851 14.934 hybrid contribution -0.606 -1.309 -0.518 1.533 sum 8.182 9.748 4.333 13.444 Atomic orbital electron populations 1.22093 0.87708 1.01547 0.98841 1.62261 1.08117 1.12625 1.45004 1.22201 0.95146 0.90020 0.99941 1.22181 0.94192 0.98846 0.91192 1.62253 1.07726 1.14498 1.42958 1.22233 0.86978 0.97487 0.99436 1.21864 0.95984 0.93552 0.99138 1.22242 0.97937 0.97483 0.96767 1.22527 0.94090 0.97871 1.01411 1.22340 0.98095 0.98089 0.97327 1.22175 0.93535 1.00565 0.99276 1.21935 0.96877 0.87299 0.97134 1.19063 0.90486 0.92393 0.86473 1.00087 1.21259 1.42214 0.98978 0.93550 0.92593 1.25783 0.95661 1.01949 0.95041 1.70120 1.46275 1.39598 0.99868 0.85536 0.78684 0.79384 0.77942 1.19918 1.20935 1.19122 0.92251 0.98067 0.90423 0.96568 0.88869 0.95318 0.88258 0.95934 0.92587 0.90323 0.93612 0.92413 0.90570 0.91488 0.90213 0.92333 0.90449 0.92252 0.97450 0.93847 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.91 9.36 127.69 1.20 3.10 16 2 N -0.55 -24.92 4.78 -900.96 -4.30 -29.22 16 3 C 0.06 2.06 5.62 86.31 0.49 2.54 16 4 C 0.06 2.21 5.14 86.31 0.44 2.65 16 5 N -0.55 -22.15 4.56 -895.73 -4.09 -26.24 16 6 C 0.07 2.23 4.18 86.30 0.36 2.59 16 7 C -0.09 -2.23 2.45 -10.07 -0.02 -2.25 16 8 C -0.11 -2.79 6.13 31.70 0.19 -2.60 16 9 C -0.12 -2.41 6.91 31.91 0.22 -2.19 16 10 C -0.12 -2.27 6.83 31.67 0.22 -2.05 16 11 C -0.12 -2.44 6.46 31.32 0.20 -2.24 16 12 C 0.10 4.75 4.88 86.31 0.42 5.17 16 13 C 0.22 11.82 1.87 44.18 0.08 11.90 16 14 H -0.02 -1.15 7.68 -2.38 -0.02 -1.17 16 15 C -0.52 -29.31 7.01 25.60 0.18 -29.13 16 16 H 0.06 3.15 7.57 -2.91 -0.02 3.13 16 17 C 0.02 0.87 5.45 84.66 0.46 1.33 16 18 N -0.92 -54.72 13.01 21.45 0.28 -54.44 16 19 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H 0.06 2.63 6.68 -2.39 -0.02 2.61 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 2.83 5.94 -2.39 -0.01 2.82 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.08 1.91 6.08 -2.38 -0.01 1.90 16 33 H 0.05 1.43 7.81 -2.39 -0.02 1.41 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.04 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -62.86 325.30 -0.71 -63.56 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.94 Total: 11.35 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.44 Total: -11.18 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -8.11 Total: -109.90 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -62.86 -0.71 -63.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.219 kcal (2) G-P(sol) polarization free energy of solvation -62.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds