Wall clock time and date at job start Mon Mar 30 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46958 * 111.00353 * 2 1 4 4 C 1.53047 * 109.36680 * 183.18902 * 3 2 1 5 5 N 1.46957 * 109.36322 * 301.59679 * 4 3 2 6 6 C 1.46895 * 111.00321 * 183.18876 * 5 4 3 7 7 C 1.52994 * 109.47422 * 170.34978 * 6 5 4 8 8 C 1.54266 * 110.03547 * 293.84089 * 7 6 5 9 9 C 1.54891 * 104.19996 * 217.10533 * 8 7 6 10 10 C 1.54888 * 102.74642 * 37.93877 * 9 8 7 11 11 C 1.53872 * 110.03509 * 176.67530 * 7 6 5 12 12 C 1.46958 * 110.87824 * 59.31987 * 5 4 3 13 13 C 1.46957 * 110.99863 * 123.79830 * 2 1 3 14 14 H 1.09005 * 109.48890 * 296.78142 * 13 2 1 15 15 C 1.50700 * 109.48901 * 56.84473 * 13 2 1 16 16 H 1.08000 * 119.99867 * 34.99687 * 15 13 2 17 17 C 1.37876 * 120.00099 * 215.00540 * 15 13 2 18 18 N 1.31512 * 120.00254 * 174.90678 * 17 15 13 19 19 Si 1.86800 * 120.00023 * 354.90263 * 17 15 13 20 20 H 1.48497 * 109.47237 * 94.73549 * 19 17 15 21 21 H 1.48496 * 109.47233 * 214.74269 * 19 17 15 22 22 H 1.48510 * 109.46899 * 334.73634 * 19 17 15 23 23 H 1.09000 * 109.46575 * 65.36762 * 1 2 3 24 24 H 1.08993 * 109.46971 * 185.36494 * 1 2 3 25 25 H 1.08996 * 109.47023 * 305.37071 * 1 2 3 26 26 H 1.08997 * 109.48964 * 63.21800 * 3 2 1 27 27 H 1.09001 * 109.50121 * 303.16396 * 3 2 1 28 28 H 1.08995 * 109.49054 * 181.63522 * 4 3 2 29 29 H 1.08996 * 109.49301 * 61.56293 * 4 3 2 30 30 H 1.09000 * 109.47066 * 290.35317 * 6 5 4 31 31 H 1.09003 * 109.47198 * 50.35077 * 6 5 4 32 32 H 1.09004 * 110.01679 * 55.28416 * 7 6 5 33 33 H 1.08997 * 110.48398 * 335.78844 * 8 7 6 34 34 H 1.09000 * 110.48558 * 98.42315 * 8 7 6 35 35 H 1.08999 * 110.75123 * 279.62656 * 9 8 7 36 36 H 1.08999 * 110.91102 * 156.33193 * 9 8 7 37 37 H 1.09003 * 110.48651 * 203.37467 * 10 9 8 38 38 H 1.09008 * 110.59512 * 80.79479 * 10 9 8 39 39 H 1.08998 * 110.03630 * 238.57193 * 11 7 6 40 40 H 1.08999 * 110.03217 * 359.95306 * 11 7 6 41 41 H 1.08997 * 109.48964 * 60.64903 * 12 5 4 42 42 H 1.09006 * 109.48914 * 180.71347 * 12 5 4 43 43 H 0.96997 * 120.00409 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5658 1.0599 7 6 6.0290 -0.0244 2.3761 8 6 5.6529 0.9016 3.5513 9 6 6.8728 0.8229 4.5024 10 6 8.0693 0.7709 3.5202 11 6 7.5654 -0.1074 2.3564 12 6 3.5234 -0.8061 1.0598 13 6 1.9956 -0.7632 1.1401 14 1 1.6937 -0.2820 2.0704 15 6 1.4504 -2.1675 1.0999 16 1 1.2850 -2.6556 0.1508 17 6 1.1627 -2.8292 2.2748 18 7 0.5940 -4.0145 2.2397 19 14 1.5806 -2.0421 3.9165 20 1 0.3906 -1.3230 4.4380 21 1 1.9848 -3.0956 4.8819 22 1 2.6989 -1.0820 3.7347 23 1 -0.3632 0.4283 -0.9342 24 1 -0.3633 -1.0231 0.0961 25 1 -0.3633 0.5949 0.8380 26 1 1.6939 1.8774 0.9173 27 1 1.6015 1.9131 -0.8601 28 1 3.9179 2.3447 -0.0512 29 1 3.8255 0.8479 -1.0105 30 1 5.8824 -0.0361 0.2269 31 1 5.8825 1.5881 0.9551 32 1 5.6034 -1.0160 2.5301 33 1 5.5079 1.9233 3.2005 34 1 4.7552 0.5379 4.0513 35 1 6.8317 -0.0816 5.1093 36 1 6.9306 1.7086 5.1351 37 1 8.9351 0.3119 3.9975 38 1 8.3167 1.7710 3.1640 39 1 7.8855 -1.1392 2.5016 40 1 7.9477 0.2719 1.4087 41 1 3.8253 -1.3115 0.1425 42 1 3.9177 -1.3470 1.9201 43 1 0.3919 -4.4802 3.0662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259902902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:23 Heat of formation + Delta-G solvation = -3.221219 kcal Electronic energy + Delta-G solvation = -20037.284010 eV Core-core repulsion = 17309.530024 eV Total energy + Delta-G solvation = -2727.753987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.05924 -37.65910 -34.65699 -32.71071 -30.45836 -29.95558 -28.52130 -27.12900 -25.23055 -23.84667 -22.39297 -21.21047 -20.51143 -19.23158 -18.72238 -16.95221 -16.07309 -15.14884 -15.00358 -14.49036 -14.29657 -14.00532 -13.90065 -13.41973 -13.16440 -13.04984 -12.73073 -12.40788 -11.80860 -11.54811 -11.25812 -11.12017 -11.05166 -10.94717 -10.86110 -10.65435 -10.64890 -10.47449 -10.42342 -10.25375 -10.05081 -9.81908 -9.58511 -9.16705 -8.56912 -7.73688 -7.26299 -6.12058 -4.11640 3.26694 3.36694 3.44308 4.36894 4.40099 4.78300 4.82018 4.87817 4.91358 5.24682 5.34798 5.55268 5.58336 5.62819 5.74220 5.75540 5.79785 5.81322 5.84955 5.96226 5.98334 5.99450 6.12625 6.22498 6.23992 6.24330 6.32271 6.39959 6.43902 6.47332 6.53235 6.58725 6.68760 6.79542 7.03009 7.20436 7.45291 7.66301 7.76862 8.03526 8.15789 8.65630 8.99205 9.52203 11.00158 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.008233 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.477078 B = 3400.033262 C = 4358.299947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.537 5.537 3 C 0.055 3.945 4 C 0.064 3.936 5 N -0.546 5.546 6 C 0.066 3.934 7 C -0.092 4.092 8 C -0.104 4.104 9 C -0.129 4.129 10 C -0.122 4.122 11 C -0.120 4.120 12 C 0.067 3.933 13 C 0.190 3.810 14 H 0.010 0.990 15 C -0.505 4.505 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.894 5.894 19 Si 0.864 3.136 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.252 1.252 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.007 0.993 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 10.977 0.620 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.262 5.262 3 C -0.074 4.074 4 C -0.065 4.065 5 N -0.270 5.270 6 C -0.062 4.062 7 C -0.111 4.111 8 C -0.142 4.142 9 C -0.167 4.167 10 C -0.159 4.159 11 C -0.158 4.158 12 C -0.060 4.060 13 C 0.083 3.917 14 H 0.028 0.972 15 C -0.544 4.544 16 H 0.098 0.902 17 C -0.128 4.128 18 N -0.531 5.531 19 Si 0.691 3.309 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.176 1.176 23 H 0.063 0.937 24 H 0.107 0.893 25 H 0.026 0.974 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.774 10.817 0.723 15.285 hybrid contribution 0.147 0.262 0.934 0.981 sum 10.921 11.079 1.657 15.645 Atomic orbital electron populations 1.22174 0.87953 1.03192 0.97669 1.62211 1.07600 1.10563 1.45834 1.22086 0.94115 0.91760 0.99420 1.22024 0.95109 0.97173 0.92162 1.62307 1.06181 1.16521 1.42034 1.22150 0.88600 0.99625 0.95862 1.21813 0.94146 1.00106 0.95059 1.22240 0.97205 0.99641 0.95065 1.22554 0.95390 1.01201 0.97556 1.22327 0.97646 0.99653 0.96317 1.22180 0.95382 0.99814 0.98393 1.22613 0.97290 0.86179 0.99968 1.19705 0.90185 0.94152 0.87669 0.97229 1.20866 1.42281 0.96446 0.94798 0.90177 1.24997 0.94086 0.94866 0.98827 1.69900 1.41314 1.14075 1.27861 0.87034 0.80041 0.79627 0.84190 1.20600 1.21379 1.17602 0.93741 0.89316 0.97406 0.95338 0.91774 0.91738 0.94736 0.95475 0.91715 0.90633 0.91622 0.91657 0.91854 0.92081 0.92248 0.91980 0.92010 0.92009 0.94907 0.91201 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.46 60.07 0.57 1.35 16 2 N -0.54 -11.63 4.78 -236.13 -1.13 -12.75 16 3 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 4 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 5 N -0.55 -10.00 4.49 -234.48 -1.05 -11.05 16 6 C 0.07 1.01 4.01 -3.83 -0.02 0.99 16 7 C -0.09 -1.37 2.85 -89.51 -0.25 -1.62 16 8 C -0.10 -1.50 6.15 -25.07 -0.15 -1.66 16 9 C -0.13 -1.55 6.91 -24.74 -0.17 -1.72 16 10 C -0.12 -1.32 6.83 -25.07 -0.17 -1.49 16 11 C -0.12 -1.44 6.46 -25.62 -0.17 -1.61 16 12 C 0.07 1.46 4.46 -3.77 -0.02 1.44 16 13 C 0.19 4.56 1.49 -68.81 -0.10 4.45 16 14 H 0.01 0.25 5.60 -51.93 -0.29 -0.04 16 15 C -0.51 -13.94 7.36 -34.44 -0.25 -14.19 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 19 Si 0.86 21.30 26.59 -169.99 -4.52 16.78 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.25 -5.99 6.05 56.52 0.34 -5.65 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.09 2.04 6.68 -51.93 -0.35 1.70 16 25 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 32 H 0.08 1.29 6.32 -51.93 -0.33 0.96 16 33 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.58 5.20 -51.93 -0.27 1.31 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 320.18 15.07 4.83 4.83 Total: -1.00 -29.03 320.18 -9.96 -38.98 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.98 Total: -0.78 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.88 Total: -9.99 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -1.41 Total: -49.81 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.52 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.03 -9.96 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds