Wall clock time and date at job start Mon Mar 30 2020 04:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46958 * 111.00353 * 2 1 4 4 C 1.53047 * 109.36680 * 183.18902 * 3 2 1 5 5 N 1.46957 * 109.36322 * 301.59679 * 4 3 2 6 6 C 1.46895 * 111.00321 * 183.18876 * 5 4 3 7 7 C 1.52994 * 109.47422 * 170.34978 * 6 5 4 8 8 C 1.54266 * 110.03547 * 293.84089 * 7 6 5 9 9 C 1.54891 * 104.19996 * 217.10533 * 8 7 6 10 10 C 1.54888 * 102.74642 * 37.93877 * 9 8 7 11 11 C 1.53872 * 110.03509 * 176.67530 * 7 6 5 12 12 C 1.46958 * 110.87824 * 59.31987 * 5 4 3 13 13 C 1.46957 * 110.99863 * 123.79830 * 2 1 3 14 14 H 1.09005 * 109.48890 * 296.78142 * 13 2 1 15 15 C 1.50700 * 109.48901 * 56.84473 * 13 2 1 16 16 H 1.08000 * 119.99867 * 34.99687 * 15 13 2 17 17 C 1.37876 * 120.00099 * 215.00540 * 15 13 2 18 18 N 1.31512 * 120.00254 * 174.90678 * 17 15 13 19 19 Si 1.86800 * 120.00023 * 354.90263 * 17 15 13 20 20 H 1.48497 * 109.47237 * 94.73549 * 19 17 15 21 21 H 1.48496 * 109.47233 * 214.74269 * 19 17 15 22 22 H 1.48510 * 109.46899 * 334.73634 * 19 17 15 23 23 H 1.09000 * 109.46575 * 65.36762 * 1 2 3 24 24 H 1.08993 * 109.46971 * 185.36494 * 1 2 3 25 25 H 1.08996 * 109.47023 * 305.37071 * 1 2 3 26 26 H 1.08997 * 109.48964 * 63.21800 * 3 2 1 27 27 H 1.09001 * 109.50121 * 303.16396 * 3 2 1 28 28 H 1.08995 * 109.49054 * 181.63522 * 4 3 2 29 29 H 1.08996 * 109.49301 * 61.56293 * 4 3 2 30 30 H 1.09000 * 109.47066 * 290.35317 * 6 5 4 31 31 H 1.09003 * 109.47198 * 50.35077 * 6 5 4 32 32 H 1.09004 * 110.01679 * 55.28416 * 7 6 5 33 33 H 1.08997 * 110.48398 * 335.78844 * 8 7 6 34 34 H 1.09000 * 110.48558 * 98.42315 * 8 7 6 35 35 H 1.08999 * 110.75123 * 279.62656 * 9 8 7 36 36 H 1.08999 * 110.91102 * 156.33193 * 9 8 7 37 37 H 1.09003 * 110.48651 * 203.37467 * 10 9 8 38 38 H 1.09008 * 110.59512 * 80.79479 * 10 9 8 39 39 H 1.08998 * 110.03630 * 238.57193 * 11 7 6 40 40 H 1.08999 * 110.03217 * 359.95306 * 11 7 6 41 41 H 1.08997 * 109.48964 * 60.64903 * 12 5 4 42 42 H 1.09006 * 109.48914 * 180.71347 * 12 5 4 43 43 H 0.96997 * 120.00409 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0501 0.5658 1.0598 6 6 5.5191 0.5658 1.0599 7 6 6.0290 -0.0244 2.3761 8 6 5.6529 0.9016 3.5513 9 6 6.8728 0.8229 4.5024 10 6 8.0693 0.7709 3.5202 11 6 7.5654 -0.1074 2.3564 12 6 3.5234 -0.8061 1.0598 13 6 1.9956 -0.7632 1.1401 14 1 1.6937 -0.2820 2.0704 15 6 1.4504 -2.1675 1.0999 16 1 1.2850 -2.6556 0.1508 17 6 1.1627 -2.8292 2.2748 18 7 0.5940 -4.0145 2.2397 19 14 1.5806 -2.0421 3.9165 20 1 0.3906 -1.3230 4.4380 21 1 1.9848 -3.0956 4.8819 22 1 2.6989 -1.0820 3.7347 23 1 -0.3632 0.4283 -0.9342 24 1 -0.3633 -1.0231 0.0961 25 1 -0.3633 0.5949 0.8380 26 1 1.6939 1.8774 0.9173 27 1 1.6015 1.9131 -0.8601 28 1 3.9179 2.3447 -0.0512 29 1 3.8255 0.8479 -1.0105 30 1 5.8824 -0.0361 0.2269 31 1 5.8825 1.5881 0.9551 32 1 5.6034 -1.0160 2.5301 33 1 5.5079 1.9233 3.2005 34 1 4.7552 0.5379 4.0513 35 1 6.8317 -0.0816 5.1093 36 1 6.9306 1.7086 5.1351 37 1 8.9351 0.3119 3.9975 38 1 8.3167 1.7710 3.1640 39 1 7.8855 -1.1392 2.5016 40 1 7.9477 0.2719 1.4087 41 1 3.8253 -1.3115 0.1425 42 1 3.9177 -1.3470 1.9201 43 1 0.3919 -4.4802 3.0662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259902902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:23 Heat of formation + Delta-G solvation = -22.860131 kcal Electronic energy + Delta-G solvation = -20038.135618 eV Core-core repulsion = 17309.530024 eV Total energy + Delta-G solvation = -2728.605594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48521 -38.92392 -36.15130 -34.78010 -32.15299 -31.32033 -29.52093 -28.55533 -27.16117 -25.27161 -23.92520 -22.83085 -21.48598 -20.49588 -20.25582 -19.08155 -17.46218 -16.58330 -16.17744 -16.13917 -15.83937 -15.59447 -15.41537 -14.84592 -14.71646 -14.52090 -14.14353 -14.04078 -13.30835 -13.08899 -12.91797 -12.69848 -12.51057 -12.34168 -12.00985 -11.96174 -11.92671 -11.80187 -11.75127 -11.70345 -11.51031 -11.42571 -11.18258 -11.00276 -10.72057 -9.21859 -8.98134 -8.33887 -6.36771 1.26647 1.31695 1.45594 2.29268 2.89243 3.10509 3.35948 3.77472 3.81194 3.84681 4.13593 4.25949 4.35652 4.44493 4.47304 4.53872 4.60160 4.63320 4.64760 4.68030 4.75711 4.80450 4.85773 4.89528 4.92692 4.94598 5.00120 5.12339 5.14171 5.15796 5.21757 5.27854 5.35663 5.42998 5.50903 5.53707 5.57179 6.04938 6.16875 6.21066 6.44196 6.67108 6.75584 7.30358 8.82405 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018870 B = 0.008233 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.477078 B = 3400.033262 C = 4358.299947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.553 5.553 3 C 0.054 3.946 4 C 0.063 3.937 5 N -0.551 5.551 6 C 0.068 3.932 7 C -0.097 4.097 8 C -0.104 4.104 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.082 3.918 13 C 0.196 3.804 14 H -0.003 1.003 15 C -0.501 4.501 16 H 0.036 0.964 17 C 0.024 3.976 18 N -0.940 5.940 19 Si 0.927 3.073 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.242 1.242 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.012 0.988 26 H 0.026 0.974 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.014 0.986 42 H 0.055 0.945 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.856 14.033 0.912 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.278 5.278 3 C -0.074 4.074 4 C -0.065 4.065 5 N -0.275 5.275 6 C -0.059 4.059 7 C -0.115 4.115 8 C -0.141 4.141 9 C -0.165 4.165 10 C -0.152 4.152 11 C -0.154 4.154 12 C -0.046 4.046 13 C 0.088 3.912 14 H 0.015 0.985 15 C -0.540 4.540 16 H 0.054 0.946 17 C -0.175 4.175 18 N -0.580 5.580 19 Si 0.751 3.249 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.165 1.165 23 H 0.096 0.904 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.799 13.897 1.000 18.920 hybrid contribution -0.518 -0.676 0.721 1.116 sum 12.281 13.221 1.721 18.127 Atomic orbital electron populations 1.22111 0.87576 1.01225 0.99609 1.62150 1.08180 1.13030 1.44428 1.22248 0.95107 0.89459 1.00627 1.22150 0.94243 0.98773 0.91293 1.62266 1.08241 1.13976 1.43065 1.22246 0.86442 1.01238 0.96012 1.21829 0.96166 0.98435 0.95116 1.22209 0.97091 0.99525 0.95320 1.22547 0.94736 1.01676 0.97520 1.22313 0.97379 1.00263 0.95266 1.22156 0.93073 1.00335 0.99842 1.22182 0.95697 0.88336 0.98397 1.19504 0.91581 0.92041 0.88108 0.98488 1.20974 1.41808 0.98271 0.92956 0.94582 1.25724 0.94102 0.95286 1.02377 1.70028 1.43239 1.15785 1.28900 0.86036 0.80074 0.78946 0.79802 1.20179 1.20902 1.16503 0.90450 0.93022 0.96912 0.95559 0.88760 0.87964 0.95039 0.95615 0.88926 0.93852 0.90946 0.94663 0.92507 0.90517 0.90808 0.90496 0.92195 0.90643 0.96777 0.92628 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.75 9.46 127.69 1.21 2.96 16 2 N -0.55 -23.63 4.78 -900.98 -4.30 -27.93 16 3 C 0.05 1.79 5.61 86.31 0.48 2.28 16 4 C 0.06 1.93 5.61 86.31 0.48 2.41 16 5 N -0.55 -19.20 4.49 -895.75 -4.02 -23.22 16 6 C 0.07 1.92 4.01 86.30 0.35 2.26 16 7 C -0.10 -2.72 2.85 -10.07 -0.03 -2.74 16 8 C -0.10 -2.81 6.15 31.67 0.19 -2.62 16 9 C -0.13 -2.72 6.91 31.89 0.22 -2.50 16 10 C -0.11 -2.07 6.83 31.67 0.22 -1.85 16 11 C -0.12 -2.49 6.46 31.32 0.20 -2.29 16 12 C 0.08 3.61 4.46 86.31 0.39 3.99 16 13 C 0.20 9.50 1.49 44.17 0.07 9.56 16 14 H 0.00 -0.13 5.60 -2.38 -0.01 -0.14 16 15 C -0.50 -28.90 7.36 25.60 0.19 -28.71 16 16 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 17 C 0.02 1.39 5.47 84.65 0.46 1.85 16 18 N -0.94 -58.63 13.96 21.45 0.30 -58.33 16 19 Si 0.93 45.23 26.59 68.60 1.82 47.05 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.24 -11.28 6.05 99.48 0.60 -10.68 16 23 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 24 H 0.05 2.46 6.68 -2.39 -0.02 2.44 16 25 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.10 2.40 8.07 -2.39 -0.02 2.39 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 31 H 0.09 2.14 7.94 -2.39 -0.02 2.12 16 32 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 33 H 0.07 1.84 7.79 -2.39 -0.02 1.82 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 41 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 2.57 5.20 -2.38 -0.01 2.55 16 43 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -65.49 320.18 -0.94 -66.43 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.84 Total: 11.40 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.43 Total: -15.40 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -8.03 Total: -109.48 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.82 Total: 47.05 kcal Total: -65.49 -0.94 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.571 kcal (2) G-P(sol) polarization free energy of solvation -65.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds