Wall clock time and date at job start Mon Mar 30 2020 03:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46852 * 110.99694 * 2 1 4 4 C 1.53040 * 109.52145 * 185.83737 * 3 2 1 5 5 C 1.53122 * 109.27926 * 300.81954 * 4 3 2 6 6 C 1.53121 * 109.15839 * 57.65231 * 5 4 3 7 7 C 1.46848 * 110.99861 * 124.20733 * 2 1 3 8 8 H 1.09013 * 109.46053 * 294.16937 * 7 2 1 9 9 C 1.52995 * 109.46199 * 54.14362 * 7 2 1 10 10 N 1.46908 * 109.46996 * 183.36985 * 9 7 2 11 11 C 1.48556 * 110.99740 * 75.61993 * 10 9 7 12 12 C 1.54377 * 104.69635 * 159.09811 * 11 10 9 13 13 C 1.54259 * 105.06312 * 336.08433 * 12 11 10 14 14 H 1.09002 * 110.32233 * 118.89502 * 13 12 11 15 15 C 1.50693 * 110.32693 * 241.00044 * 13 12 11 16 16 H 1.08004 * 119.99801 * 118.53951 * 15 13 12 17 17 C 1.37876 * 120.00148 * 298.54890 * 15 13 12 18 18 N 1.31513 * 119.99946 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00243 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47111 * 59.99677 * 19 17 15 21 21 H 1.48494 * 109.47414 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47014 * 300.00111 * 19 17 15 23 23 C 1.48860 * 111.12997 * 190.93799 * 10 9 7 24 24 H 1.09003 * 109.47186 * 289.19807 * 1 2 3 25 25 H 1.09001 * 109.46931 * 49.19983 * 1 2 3 26 26 H 1.08994 * 109.46508 * 169.19598 * 1 2 3 27 27 H 1.08992 * 109.46163 * 305.85218 * 3 2 1 28 28 H 1.08999 * 109.46431 * 65.82079 * 3 2 1 29 29 H 1.09003 * 109.50286 * 60.75826 * 4 3 2 30 30 H 1.08998 * 109.50223 * 180.88169 * 4 3 2 31 31 H 1.08990 * 109.52703 * 177.56087 * 5 4 3 32 32 H 1.08996 * 109.52088 * 297.69251 * 5 4 3 33 33 H 1.09002 * 109.50470 * 182.40737 * 6 5 4 34 34 H 1.09005 * 109.50483 * 62.29123 * 6 5 4 35 35 H 1.08998 * 109.47039 * 63.37707 * 9 7 2 36 36 H 1.09000 * 109.47742 * 303.37250 * 9 7 2 37 37 H 1.08993 * 110.41453 * 40.25667 * 11 10 9 38 38 H 1.09006 * 110.40906 * 277.93532 * 11 10 9 39 39 H 1.09009 * 110.32442 * 94.98600 * 12 11 10 40 40 H 1.08997 * 110.32245 * 217.08244 * 12 11 10 41 41 H 0.97002 * 119.99954 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.39042 * 82.21807 * 23 10 9 43 43 H 1.09000 * 110.49238 * 319.84628 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3343 -0.1467 5 6 4.1189 0.5371 1.0145 6 6 3.5182 -0.8713 1.0210 7 6 1.9953 -0.7707 1.1338 8 1 1.7326 -0.2706 2.0661 9 6 1.3891 -2.1754 1.1205 10 7 1.8526 -2.9199 2.2991 11 6 1.1478 -2.4669 3.5259 12 6 1.3090 -3.6339 4.5236 13 6 1.5433 -4.8814 3.6470 14 1 2.5165 -5.3207 3.8661 15 6 0.4501 -5.8935 3.8740 16 1 -0.1903 -6.1891 3.0561 17 6 0.2673 -6.4418 5.1257 18 7 1.0474 -6.0820 6.1215 19 14 -1.0882 -7.6959 5.4073 20 1 -0.8642 -8.8725 4.5293 21 1 -1.0747 -8.1290 6.8276 22 1 -2.4030 -7.0835 5.0884 23 6 1.5040 -4.3633 2.1933 24 1 -0.3634 0.3379 0.9705 25 1 -0.3633 0.6715 -0.7779 26 1 -0.3632 -1.0094 -0.1926 27 1 1.5635 1.9257 -0.8329 28 1 1.7324 1.8609 0.9375 29 1 3.7814 0.8568 -1.0905 30 1 3.9099 2.3513 -0.1309 31 1 5.1997 0.4716 0.8907 32 1 3.8896 1.0362 1.9560 33 1 3.9098 -1.4301 1.8709 34 1 3.7814 -1.3836 0.0955 35 1 1.7008 -2.6971 0.2156 36 1 0.3018 -2.1022 1.1414 37 1 0.0932 -2.2899 3.3151 38 1 1.6129 -1.5631 3.9196 39 1 2.1672 -3.4609 5.1731 40 1 0.4030 -3.7516 5.1180 41 1 0.9191 -6.4681 7.0021 42 1 2.2390 -4.8877 1.5828 43 1 0.5055 -4.4849 1.7732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:20 Heat of formation + Delta-G solvation = -4.166651 kcal Electronic energy + Delta-G solvation = -19552.406045 eV Core-core repulsion = 16824.611061 eV Total energy + Delta-G solvation = -2727.794984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42685 -37.58177 -33.68938 -33.32479 -31.74784 -29.39080 -28.10965 -26.77758 -25.43341 -23.87143 -22.79545 -21.34418 -20.09394 -19.65158 -18.99969 -16.28001 -15.88783 -15.46223 -14.90665 -14.69371 -14.40788 -14.26740 -13.89529 -13.50959 -13.22676 -12.92897 -12.48913 -12.24797 -12.15340 -11.85421 -11.68161 -11.26384 -11.20943 -11.02477 -10.75109 -10.63192 -10.57686 -10.41902 -10.25799 -10.17918 -10.00627 -9.71707 -9.23289 -8.72027 -8.36950 -8.29534 -7.74898 -6.00385 -4.04303 3.31693 3.36668 3.38945 3.85250 4.43248 4.71718 4.86336 4.91613 5.00685 5.11135 5.31407 5.33768 5.41235 5.45422 5.54015 5.58179 5.70759 5.77178 5.83261 5.91546 5.92643 5.95421 6.05355 6.12267 6.18655 6.24373 6.30951 6.39537 6.44470 6.55579 6.61009 6.90415 7.07798 7.15813 7.17535 7.21594 7.57798 7.70445 7.77771 7.91455 8.02134 8.48124 8.98570 9.59603 11.08752 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.004544 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.486864 B = 6160.318833 C = 6446.878903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.101 4.101 7 C 0.095 3.905 8 H 0.038 0.962 9 C 0.050 3.950 10 N -0.512 5.512 11 C 0.032 3.968 12 C -0.090 4.090 13 C 0.049 3.951 14 H 0.033 0.967 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C 0.042 3.958 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 13.853 -10.324 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.139 4.139 7 C -0.013 4.013 8 H 0.056 0.944 9 C -0.079 4.079 10 N -0.236 5.236 11 C -0.096 4.096 12 C -0.129 4.129 13 C 0.030 3.970 14 H 0.051 0.949 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.085 4.085 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.954 13.682 -10.531 17.516 hybrid contribution -2.046 -0.332 0.904 2.261 sum 0.908 13.350 -9.627 16.484 Atomic orbital electron populations 1.22401 0.87747 1.02547 0.99898 1.61917 1.07301 1.13173 1.44167 1.22060 0.95751 0.89255 0.99967 1.21590 0.94397 0.99784 0.99627 1.21627 0.99815 0.96672 0.98008 1.21506 0.93332 0.95931 1.03146 1.21557 0.95640 0.93517 0.90624 0.94361 1.22281 0.96790 0.93602 0.95232 1.65353 1.52897 1.03954 1.01421 1.23205 0.94996 0.99133 0.92278 1.22180 1.01050 0.93319 0.96337 1.19346 0.97463 0.92644 0.87556 0.94887 1.21167 1.15808 1.23456 0.95086 0.92826 1.24957 0.96134 0.96576 0.96221 1.69979 1.38150 1.43255 1.01135 0.86709 0.82528 0.81958 0.77091 1.20259 1.21305 1.20387 1.23313 0.97721 0.86546 1.00918 0.95786 0.91846 0.90954 0.91142 0.95289 0.91216 0.92016 0.91978 0.92576 0.89903 0.91660 0.90850 0.94956 0.95375 0.92449 0.93694 0.91641 0.92996 0.92138 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.88 60.07 0.53 0.79 16 2 N -0.54 -6.88 4.75 -234.92 -1.12 -8.00 16 3 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 4 C -0.12 -1.17 6.09 -26.65 -0.16 -1.34 16 5 C -0.12 -1.39 6.00 -26.61 -0.16 -1.55 16 6 C -0.10 -1.37 5.23 -26.65 -0.14 -1.51 16 7 C 0.09 1.35 1.95 -67.73 -0.13 1.22 16 8 H 0.04 0.60 7.39 -51.92 -0.38 0.21 16 9 C 0.05 0.81 3.95 -3.82 -0.02 0.80 16 10 N -0.51 -9.73 4.74 -229.71 -1.09 -10.82 16 11 C 0.03 0.63 5.93 -2.19 -0.01 0.62 16 12 C -0.09 -2.14 5.75 -25.35 -0.15 -2.29 16 13 C 0.05 1.23 2.99 -90.39 -0.27 0.96 16 14 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.52 -14.17 8.38 -34.44 -0.29 -14.46 16 16 H 0.05 1.45 7.58 -52.48 -0.40 1.05 16 17 C 0.06 1.75 5.09 -17.82 -0.09 1.65 16 18 N -0.89 -25.49 12.35 55.43 0.68 -24.81 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.04 0.90 6.00 -2.01 -0.01 0.89 16 24 H 0.02 0.29 8.12 -51.93 -0.42 -0.14 16 25 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 26 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 27 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.03 0.53 5.88 -51.93 -0.31 0.23 16 37 H 0.03 0.56 7.74 -51.93 -0.40 0.15 16 38 H 0.06 1.06 7.79 -51.93 -0.40 0.65 16 39 H 0.04 1.09 8.14 -51.92 -0.42 0.66 16 40 H 0.06 1.70 7.25 -51.93 -0.38 1.32 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -27.83 323.63 -10.59 -38.42 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.01 Total: -2.31 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -0.92 Total: -13.60 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -1.52 Total: -43.62 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.83 -10.59 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.254 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds