Wall clock time and date at job start Mon Mar 30 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46852 * 110.99694 * 2 1 4 4 C 1.53040 * 109.52145 * 185.83737 * 3 2 1 5 5 C 1.53122 * 109.27926 * 300.81954 * 4 3 2 6 6 C 1.53121 * 109.15839 * 57.65231 * 5 4 3 7 7 C 1.46848 * 110.99861 * 124.20733 * 2 1 3 8 8 H 1.09013 * 109.46053 * 294.16937 * 7 2 1 9 9 C 1.52995 * 109.46199 * 54.14362 * 7 2 1 10 10 N 1.46908 * 109.46996 * 183.36985 * 9 7 2 11 11 C 1.48556 * 110.99740 * 75.61993 * 10 9 7 12 12 C 1.54377 * 104.69635 * 159.09811 * 11 10 9 13 13 C 1.54259 * 105.06312 * 336.08433 * 12 11 10 14 14 H 1.09002 * 110.32233 * 118.89502 * 13 12 11 15 15 C 1.50693 * 110.32693 * 241.00044 * 13 12 11 16 16 H 1.08004 * 119.99801 * 118.53951 * 15 13 12 17 17 C 1.37876 * 120.00148 * 298.54890 * 15 13 12 18 18 N 1.31513 * 119.99946 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00243 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.47111 * 59.99677 * 19 17 15 21 21 H 1.48494 * 109.47414 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47014 * 300.00111 * 19 17 15 23 23 C 1.48860 * 111.12997 * 190.93799 * 10 9 7 24 24 H 1.09003 * 109.47186 * 289.19807 * 1 2 3 25 25 H 1.09001 * 109.46931 * 49.19983 * 1 2 3 26 26 H 1.08994 * 109.46508 * 169.19598 * 1 2 3 27 27 H 1.08992 * 109.46163 * 305.85218 * 3 2 1 28 28 H 1.08999 * 109.46431 * 65.82079 * 3 2 1 29 29 H 1.09003 * 109.50286 * 60.75826 * 4 3 2 30 30 H 1.08998 * 109.50223 * 180.88169 * 4 3 2 31 31 H 1.08990 * 109.52703 * 177.56087 * 5 4 3 32 32 H 1.08996 * 109.52088 * 297.69251 * 5 4 3 33 33 H 1.09002 * 109.50470 * 182.40737 * 6 5 4 34 34 H 1.09005 * 109.50483 * 62.29123 * 6 5 4 35 35 H 1.08998 * 109.47039 * 63.37707 * 9 7 2 36 36 H 1.09000 * 109.47742 * 303.37250 * 9 7 2 37 37 H 1.08993 * 110.41453 * 40.25667 * 11 10 9 38 38 H 1.09006 * 110.40906 * 277.93532 * 11 10 9 39 39 H 1.09009 * 110.32442 * 94.98600 * 12 11 10 40 40 H 1.08997 * 110.32245 * 217.08244 * 12 11 10 41 41 H 0.97002 * 119.99954 * 180.02562 * 18 17 15 42 42 H 1.09001 * 110.39042 * 82.21807 * 23 10 9 43 43 H 1.09000 * 110.49238 * 319.84628 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5182 1.3343 -0.1467 5 6 4.1189 0.5371 1.0145 6 6 3.5182 -0.8713 1.0210 7 6 1.9953 -0.7707 1.1338 8 1 1.7326 -0.2706 2.0661 9 6 1.3891 -2.1754 1.1205 10 7 1.8526 -2.9199 2.2991 11 6 1.1478 -2.4669 3.5259 12 6 1.3090 -3.6339 4.5236 13 6 1.5433 -4.8814 3.6470 14 1 2.5165 -5.3207 3.8661 15 6 0.4501 -5.8935 3.8740 16 1 -0.1903 -6.1891 3.0561 17 6 0.2673 -6.4418 5.1257 18 7 1.0474 -6.0820 6.1215 19 14 -1.0882 -7.6959 5.4073 20 1 -0.8642 -8.8725 4.5293 21 1 -1.0747 -8.1290 6.8276 22 1 -2.4030 -7.0835 5.0884 23 6 1.5040 -4.3633 2.1933 24 1 -0.3634 0.3379 0.9705 25 1 -0.3633 0.6715 -0.7779 26 1 -0.3632 -1.0094 -0.1926 27 1 1.5635 1.9257 -0.8329 28 1 1.7324 1.8609 0.9375 29 1 3.7814 0.8568 -1.0905 30 1 3.9099 2.3513 -0.1309 31 1 5.1997 0.4716 0.8907 32 1 3.8896 1.0362 1.9560 33 1 3.9098 -1.4301 1.8709 34 1 3.7814 -1.3836 0.0955 35 1 1.7008 -2.6971 0.2156 36 1 0.3018 -2.1022 1.1414 37 1 0.0932 -2.2899 3.3151 38 1 1.6129 -1.5631 3.9196 39 1 2.1672 -3.4609 5.1731 40 1 0.4030 -3.7516 5.1180 41 1 0.9191 -6.4681 7.0021 42 1 2.2390 -4.8877 1.5828 43 1 0.5055 -4.4849 1.7732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:19 Heat of formation + Delta-G solvation = -21.315665 kcal Electronic energy + Delta-G solvation = -19553.149682 eV Core-core repulsion = 16824.611061 eV Total energy + Delta-G solvation = -2728.538621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59780 -39.12178 -35.31745 -34.45761 -33.31464 -30.88075 -29.93498 -27.80131 -26.93004 -25.61124 -23.78101 -22.65849 -21.46548 -21.32145 -20.35217 -18.31508 -17.13197 -16.79898 -16.42053 -16.31589 -15.64607 -15.43317 -15.05705 -14.87819 -14.65987 -14.12483 -13.89208 -13.72094 -13.47924 -13.21423 -12.96864 -12.79202 -12.59620 -12.54495 -12.48414 -12.29811 -12.05233 -11.75681 -11.70415 -11.55682 -11.28532 -11.11805 -11.04698 -10.79775 -10.48312 -9.38140 -9.23445 -8.13442 -6.24638 1.41284 1.42458 1.50197 2.41902 2.78424 3.17407 3.37999 3.79895 3.91499 4.02287 4.10083 4.17509 4.29383 4.33541 4.39037 4.51018 4.53261 4.56407 4.63433 4.65160 4.74593 4.81630 4.86900 4.90273 4.94096 5.02023 5.05032 5.11399 5.16038 5.25701 5.28200 5.33091 5.42434 5.54092 5.60415 5.74132 5.87073 5.95681 6.06994 6.20013 6.29326 6.40450 6.85945 7.43124 8.95369 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.043167 B = 0.004544 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.486864 B = 6160.318833 C = 6446.878903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.099 4.099 7 C 0.103 3.897 8 H 0.026 0.974 9 C 0.054 3.946 10 N -0.510 5.510 11 C 0.046 3.954 12 C -0.082 4.082 13 C 0.040 3.960 14 H -0.001 1.001 15 C -0.535 4.535 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.054 3.946 24 H 0.019 0.981 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.038 0.962 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 15.132 -11.767 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.137 4.137 7 C -0.006 4.006 8 H 0.044 0.956 9 C -0.075 4.075 10 N -0.234 5.234 11 C -0.082 4.082 12 C -0.121 4.121 13 C 0.021 3.979 14 H 0.017 0.983 15 C -0.573 4.573 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.074 4.074 24 H 0.037 0.963 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.426 14.975 -11.993 19.338 hybrid contribution -1.852 -0.718 1.335 2.394 sum 0.573 14.257 -10.657 17.810 Atomic orbital electron populations 1.22436 0.87135 1.02672 1.00393 1.61933 1.07950 1.14316 1.42955 1.22180 0.96326 0.88135 1.00623 1.21583 0.93808 1.00766 0.98810 1.21609 1.00456 0.95213 0.98600 1.21449 0.92923 0.97330 1.02024 1.21396 0.96000 0.92295 0.90886 0.95578 1.22306 0.96919 0.94501 0.93738 1.65339 1.52891 1.02854 1.02296 1.23043 0.95559 0.98042 0.91598 1.21961 0.98975 0.94579 0.96568 1.19318 0.95149 0.92948 0.90455 0.98254 1.21496 1.16339 1.24154 0.95328 0.92833 1.25744 0.98354 0.98444 0.95955 1.70106 1.39681 1.44353 1.01457 0.85670 0.79741 0.79556 0.77050 1.19547 1.20958 1.19632 1.23082 0.97883 0.88084 0.98333 0.96279 0.89720 0.91695 0.89303 0.95510 0.91283 0.89853 0.90897 0.92806 0.91912 0.91972 0.90603 0.94919 0.95022 0.90575 0.95114 0.94318 0.93007 0.91345 0.95018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.88 127.69 1.13 1.59 16 2 N -0.55 -12.70 4.75 -897.15 -4.26 -16.96 16 3 C 0.05 1.03 5.46 86.33 0.47 1.51 16 4 C -0.11 -1.93 6.09 30.65 0.19 -1.74 16 5 C -0.12 -2.48 6.00 30.68 0.18 -2.29 16 6 C -0.10 -2.57 5.23 30.65 0.16 -2.41 16 7 C 0.10 2.79 1.95 44.93 0.09 2.88 16 8 H 0.03 0.78 7.39 -2.38 -0.02 0.76 16 9 C 0.05 1.69 3.95 86.30 0.34 2.03 16 10 N -0.51 -19.15 4.74 -880.67 -4.17 -23.32 16 11 C 0.05 1.79 5.93 86.45 0.51 2.31 16 12 C -0.08 -4.00 5.75 31.49 0.18 -3.82 16 13 C 0.04 2.09 2.99 -10.65 -0.03 2.06 16 14 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 15 C -0.53 -29.83 8.38 25.60 0.21 -29.62 16 16 H 0.05 2.92 7.58 -2.91 -0.02 2.89 16 17 C 0.01 0.80 5.09 84.65 0.43 1.23 16 18 N -0.92 -53.90 12.35 21.45 0.26 -53.63 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 C 0.05 2.31 6.00 86.39 0.52 2.82 16 24 H 0.02 0.42 8.12 -2.39 -0.02 0.40 16 25 H 0.08 1.42 7.97 -2.39 -0.02 1.40 16 26 H 0.06 1.46 6.55 -2.39 -0.02 1.44 16 27 H 0.09 1.37 8.01 -2.39 -0.02 1.35 16 28 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.86 7.73 -2.39 -0.02 1.85 16 34 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.03 1.03 5.88 -2.39 -0.01 1.02 16 37 H 0.03 1.23 7.74 -2.39 -0.02 1.21 16 38 H 0.08 2.73 7.79 -2.38 -0.02 2.71 16 39 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.04 2.06 7.25 -2.39 -0.02 2.04 16 41 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.03 1.36 7.57 -2.39 -0.02 1.35 16 Total: -1.00 -59.87 323.63 -0.81 -60.68 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.94 Total: 10.88 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 4.39 Total: -23.46 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -8.16 Total: -93.91 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -59.87 -0.81 -60.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.363 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds