Wall clock time and date at job start Mon Mar 30 2020 03:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46847 * 111.00108 * 2 1 4 4 C 1.53046 * 109.52305 * 174.16161 * 3 2 1 5 5 C 1.53123 * 109.27665 * 59.18005 * 4 3 2 6 6 C 1.53124 * 109.15943 * 302.34465 * 5 4 3 7 7 C 1.46852 * 110.99978 * 235.78949 * 2 1 3 8 8 H 1.08998 * 109.45275 * 65.82719 * 7 2 1 9 9 C 1.52999 * 109.46100 * 305.85757 * 7 2 1 10 10 N 1.46901 * 109.47033 * 175.80078 * 9 7 2 11 11 C 1.48530 * 110.99656 * 302.30283 * 10 9 7 12 12 C 1.54942 * 103.22560 * 200.28002 * 11 10 9 13 13 C 1.54595 * 102.92079 * 37.41267 * 12 11 10 14 14 H 1.09006 * 110.39240 * 96.99942 * 13 12 11 15 15 C 1.50695 * 110.31240 * 219.12608 * 13 12 11 16 16 H 1.07993 * 120.00012 * 118.00081 * 15 13 12 17 17 C 1.37884 * 119.99709 * 298.00772 * 15 13 12 18 18 N 1.31512 * 120.00417 * 4.00827 * 17 15 13 19 19 Si 1.86802 * 119.99710 * 184.29559 * 17 15 13 20 20 H 1.48502 * 109.46613 * 264.72414 * 19 17 15 21 21 H 1.48500 * 109.47188 * 24.72024 * 19 17 15 22 22 H 1.48499 * 109.47366 * 144.72630 * 19 17 15 23 23 C 1.47904 * 110.99826 * 184.90590 * 10 9 7 24 24 H 1.08996 * 109.47344 * 190.67639 * 1 2 3 25 25 H 1.09006 * 109.47020 * 310.67387 * 1 2 3 26 26 H 1.09001 * 109.47148 * 70.67095 * 1 2 3 27 27 H 1.08999 * 109.46652 * 54.14798 * 3 2 1 28 28 H 1.09000 * 109.46405 * 294.17480 * 3 2 1 29 29 H 1.08999 * 109.50207 * 299.23728 * 4 3 2 30 30 H 1.08997 * 109.50166 * 179.11975 * 4 3 2 31 31 H 1.09000 * 109.51922 * 182.44469 * 5 4 3 32 32 H 1.08994 * 109.57682 * 62.28097 * 5 4 3 33 33 H 1.08999 * 109.50284 * 297.71608 * 6 5 4 34 34 H 1.09000 * 109.49935 * 177.60429 * 6 5 4 35 35 H 1.08993 * 109.47303 * 55.79572 * 9 7 2 36 36 H 1.09001 * 109.46729 * 295.79839 * 9 7 2 37 37 H 1.09001 * 110.66995 * 318.71025 * 11 10 9 38 38 H 1.09004 * 110.66914 * 81.67775 * 11 10 9 39 39 H 1.08999 * 110.72348 * 279.05620 * 12 11 10 40 40 H 1.08999 * 110.72188 * 155.77105 * 12 11 10 41 41 H 0.96997 * 120.00116 * 180.27795 * 18 17 15 42 42 H 1.09002 * 109.91570 * 26.49157 * 23 10 9 43 43 H 1.08996 * 109.91653 * 265.19182 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1467 5 6 4.1188 0.5369 -1.0145 6 6 3.5180 -0.8716 -1.0209 7 6 1.9952 -0.7708 -1.1338 8 1 1.7324 -0.2707 -2.0659 9 6 1.3889 -2.1755 -1.1204 10 7 1.8366 -2.9133 -2.3092 11 6 1.4609 -2.1953 -3.5540 12 6 1.5156 -3.3052 -4.6337 13 6 0.9673 -4.5422 -3.8859 14 1 -0.0934 -4.6754 -4.0988 15 6 1.7379 -5.7758 -4.2801 16 1 2.2978 -6.3233 -3.5365 17 6 1.7282 -6.2054 -5.5903 18 7 1.1122 -5.4959 -6.5104 19 14 2.5833 -7.7993 -6.0569 20 1 3.9547 -7.5014 -6.5425 21 1 2.6608 -8.6859 -4.8682 22 1 1.8143 -8.4775 -7.1311 23 6 1.1781 -4.2351 -2.3917 24 1 -0.3634 -1.0098 0.1904 25 1 -0.3633 0.6698 0.7795 26 1 -0.3633 0.3402 -0.9697 27 1 1.5634 1.9258 0.8330 28 1 1.7324 1.8608 -0.9376 29 1 3.7813 0.8567 1.0906 30 1 3.9099 2.3511 0.1310 31 1 5.1997 0.4713 -0.8906 32 1 3.8896 1.0349 -1.9565 33 1 3.7812 -1.3837 -0.0954 34 1 3.9099 -1.4304 -1.8708 35 1 0.3015 -2.1020 -1.1265 36 1 1.7125 -2.7023 -0.2226 37 1 0.4537 -1.7865 -3.4733 38 1 2.1789 -1.4052 -3.7740 39 1 2.5415 -3.4753 -4.9603 40 1 0.8772 -3.0518 -5.4800 41 1 1.1019 -5.8001 -7.4314 42 1 0.2163 -4.2034 -1.8798 43 1 1.8159 -4.9964 -1.9426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:22 Heat of formation + Delta-G solvation = -2.486966 kcal Electronic energy + Delta-G solvation = -19624.648334 eV Core-core repulsion = 16896.926187 eV Total energy + Delta-G solvation = -2727.722147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50884 -37.58471 -33.68439 -33.32531 -31.70607 -29.38932 -28.19540 -26.78042 -25.36601 -23.89371 -22.77979 -21.46183 -20.14385 -19.44754 -18.99798 -16.49043 -15.79774 -15.67544 -14.87955 -14.59059 -14.38312 -14.20191 -13.76252 -13.61074 -13.20091 -12.93021 -12.53197 -12.26749 -12.17289 -11.73410 -11.64045 -11.40567 -11.22529 -10.91103 -10.79949 -10.62302 -10.55598 -10.49080 -10.25477 -10.17037 -9.99415 -9.64826 -9.23398 -8.75866 -8.37630 -8.27367 -7.64739 -5.98129 -3.99654 3.33492 3.40390 3.44393 3.84746 4.47574 4.71106 4.86052 4.89426 5.00148 5.10609 5.31283 5.35567 5.38757 5.43247 5.52385 5.57603 5.70243 5.76155 5.82570 5.90099 5.93425 5.96181 6.04711 6.10772 6.17816 6.20916 6.30226 6.35365 6.39047 6.55407 6.64734 6.91462 7.07456 7.15748 7.18423 7.25463 7.50683 7.71318 7.85194 7.94311 8.06820 8.47880 9.01561 9.63524 11.11645 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.039962 B = 0.004652 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.502106 B = 6017.588712 C = 6238.061129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.103 4.103 7 C 0.090 3.910 8 H 0.041 0.959 9 C 0.052 3.948 10 N -0.511 5.511 11 C 0.028 3.972 12 C -0.087 4.087 13 C 0.040 3.960 14 H 0.026 0.974 15 C -0.506 4.506 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.287 1.287 23 C 0.046 3.954 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.259 0.741 42 H 0.018 0.982 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 13.117 11.198 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.161 4.161 6 C -0.140 4.140 7 C -0.018 4.018 8 H 0.059 0.941 9 C -0.077 4.077 10 N -0.236 5.236 11 C -0.100 4.100 12 C -0.126 4.126 13 C 0.021 3.979 14 H 0.044 0.956 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.213 1.213 23 C -0.081 4.081 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.005 12.828 11.495 17.341 hybrid contribution -0.846 -0.291 -1.133 1.444 sum 1.159 12.537 10.362 16.306 Atomic orbital electron populations 1.22401 0.87764 1.02531 0.99898 1.61900 1.07279 1.13194 1.44138 1.22063 0.95770 0.89222 0.99982 1.21589 0.94373 0.99799 0.99624 1.21629 0.99867 0.96625 0.98020 1.21522 0.93239 0.95994 1.03280 1.21661 0.95759 0.93543 0.90846 0.94088 1.22330 0.96552 0.93321 0.95452 1.64719 1.54889 1.03203 1.00743 1.23365 0.96782 0.97793 0.92024 1.22359 1.01623 0.93289 0.95286 1.19493 0.96457 0.94203 0.87775 0.95619 1.21192 1.29926 1.09491 0.93852 0.92449 1.24977 0.95540 0.96959 0.96603 1.69981 1.43604 1.37955 1.01467 0.86606 0.79456 0.83942 0.78158 1.20818 1.19879 1.21343 1.23075 0.94910 0.89741 1.00358 0.90958 0.91815 0.95817 0.91119 0.95277 0.91199 0.91993 0.91927 0.92561 0.91511 0.89932 0.95329 0.90695 0.95785 0.92050 0.91921 0.92367 0.93175 0.96363 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.89 60.06 0.53 0.79 16 2 N -0.54 -6.87 4.75 -234.93 -1.11 -7.98 16 3 C 0.06 0.63 5.46 -3.83 -0.02 0.61 16 4 C -0.12 -1.18 6.09 -26.64 -0.16 -1.34 16 5 C -0.12 -1.41 6.00 -26.60 -0.16 -1.57 16 6 C -0.10 -1.41 5.24 -26.65 -0.14 -1.55 16 7 C 0.09 1.29 1.69 -67.72 -0.11 1.17 16 8 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 9 C 0.05 0.85 3.97 -3.82 -0.02 0.83 16 10 N -0.51 -9.85 4.79 -230.45 -1.10 -10.95 16 11 C 0.03 0.55 5.31 -1.90 -0.01 0.54 16 12 C -0.09 -2.06 5.52 -24.87 -0.14 -2.20 16 13 C 0.04 1.00 2.95 -90.42 -0.27 0.73 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.51 -13.98 8.40 -34.44 -0.29 -14.27 16 16 H 0.06 1.57 7.35 -52.49 -0.39 1.19 16 17 C 0.06 1.68 5.36 -17.82 -0.10 1.59 16 18 N -0.89 -25.66 12.32 55.43 0.68 -24.98 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.05 1.00 6.35 -2.75 -0.02 0.98 16 24 H 0.07 0.86 6.52 -51.93 -0.34 0.52 16 25 H 0.06 0.62 7.97 -51.93 -0.41 0.20 16 26 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 27 H 0.07 0.67 8.01 -51.93 -0.42 0.26 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.28 7.75 -51.93 -0.40 0.87 16 35 H 0.03 0.47 6.04 -51.93 -0.31 0.15 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.46 8.02 -51.93 -0.42 0.04 16 38 H 0.06 1.12 7.55 -51.93 -0.39 0.73 16 39 H 0.06 1.61 7.86 -51.93 -0.41 1.20 16 40 H 0.06 1.44 8.01 -51.93 -0.42 1.03 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.37 7.66 -51.93 -0.40 -0.03 16 43 H 0.07 1.58 7.39 -51.93 -0.38 1.19 16 LS Contribution 322.30 15.07 4.86 4.86 Total: -1.00 -28.06 322.30 -10.56 -38.62 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.97 Total: -2.31 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.89 Total: -13.68 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.54 Total: -43.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.06 -10.56 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.132 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds